data_4EWN # _model_server_result.job_id lIZ2eohpf_Ab96b-lm-yvw _model_server_result.datetime_utc '2025-03-05 02:38:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ewn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 4EWN # _exptl.entry_id 4EWN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.246 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(O-carboxy-phenylamino)-1-deoxy-D-ribulose-5-phosphate _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EWN _cell.length_a 57.654 _cell.length_b 112.517 _cell.length_c 163.402 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EWN _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H18 N O9 P' _chem_comp.formula_weight 351.246 _chem_comp.id 0VR _chem_comp.mon_nstd_flag . _chem_comp.name 1-(O-carboxy-phenylamino)-1-deoxy-D-ribulose-5-phosphate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-[(2-carboxyphenyl)amino]-1-deoxy-5-O-phosphono-D-ribitol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O72 C7 0VR doub 1 n n C7 O71 0VR sing 2 n n C7 C1 0VR sing 3 n n C1 C6 0VR doub 4 n y C1 C2 0VR sing 5 n y C6 C5 0VR sing 6 n y NH C2 0VR sing 7 n n NH C1' 0VR sing 8 n n C2 C3 0VR doub 9 n y C1' C2' 0VR sing 10 n n C2' O2' 0VR sing 11 n n C2' C3' 0VR sing 12 n n C5 C4 0VR doub 13 n y O3' C3' 0VR sing 14 n n C3 C4 0VR sing 15 n y C3' C4' 0VR sing 16 n n C4' O4' 0VR sing 17 n n C4' C5' 0VR sing 18 n n C5' O5' 0VR sing 19 n n O5' P 0VR sing 20 n n O1P P 0VR doub 21 n n P O3P 0VR sing 22 n n P O2P 0VR sing 23 n n O2P H1 0VR sing 24 n n O3P H2 0VR sing 25 n n C5' H3 0VR sing 26 n n C5' H4 0VR sing 27 n n C4' H5 0VR sing 28 n n O4' H6 0VR sing 29 n n C3' H7 0VR sing 30 n n O3' H8 0VR sing 31 n n C2' H9 0VR sing 32 n n O2' H10 0VR sing 33 n n C1' H11 0VR sing 34 n n C1' H12 0VR sing 35 n n NH H13 0VR sing 36 n n C3 H14 0VR sing 37 n n C4 H15 0VR sing 38 n n C5 H16 0VR sing 39 n n C6 H17 0VR sing 40 n n O71 H18 0VR sing 41 n n # _atom_sites.entry_id 4EWN _atom_sites.fract_transf_matrix[1][1] 0.017345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008888 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0VR D 1 400 400 0VR 137 . C 3 HOH D 1 501 1 HOH HOH . C 3 HOH D 2 502 2 HOH HOH . C 3 HOH D 3 503 3 HOH HOH . C 3 HOH D 4 504 4 HOH HOH . C 3 HOH D 5 505 5 HOH HOH . C 3 HOH D 6 506 6 HOH HOH . C 3 HOH D 7 507 7 HOH HOH . C 3 HOH D 8 508 8 HOH HOH . C 3 HOH D 9 509 9 HOH HOH . C 3 HOH D 10 510 10 HOH HOH . C 3 HOH D 11 511 11 HOH HOH . C 3 HOH D 12 512 12 HOH HOH . C 3 HOH D 13 513 13 HOH HOH . C 3 HOH D 14 514 14 HOH HOH . C 3 HOH D 15 515 15 HOH HOH . C 3 HOH D 16 516 16 HOH HOH . C 3 HOH D 17 517 17 HOH HOH . C 3 HOH D 18 518 18 HOH HOH . C 3 HOH D 19 519 19 HOH HOH . C 3 HOH D 20 520 20 HOH HOH . C 3 HOH D 21 521 21 HOH HOH . C 3 HOH D 22 522 22 HOH HOH . C 3 HOH D 23 523 23 HOH HOH . C 3 HOH D 24 524 24 HOH HOH . C 3 HOH D 25 525 25 HOH HOH . C 3 HOH D 26 526 26 HOH HOH . C 3 HOH D 27 527 27 HOH HOH . C 3 HOH D 28 528 28 HOH HOH . C 3 HOH D 29 529 29 HOH HOH . C 3 HOH D 30 530 30 HOH HOH . C 3 HOH D 31 531 31 HOH HOH . C 3 HOH D 32 532 32 HOH HOH . C 3 HOH D 33 533 33 HOH HOH . C 3 HOH D 34 534 34 HOH HOH . C 3 HOH D 35 535 35 HOH HOH . C 3 HOH D 36 536 36 HOH HOH . C 3 HOH D 37 537 37 HOH HOH . C 3 HOH D 38 538 38 HOH HOH . C 3 HOH D 39 539 39 HOH HOH . C 3 HOH D 40 540 40 HOH HOH . C 3 HOH D 41 541 41 HOH HOH . C 3 HOH D 42 542 42 HOH HOH . C 3 HOH D 43 543 43 HOH HOH . C 3 HOH D 44 544 44 HOH HOH . C 3 HOH D 45 545 45 HOH HOH . C 3 HOH D 46 546 46 HOH HOH . C 3 HOH D 47 547 47 HOH HOH . C 3 HOH D 48 548 48 HOH HOH . C 3 HOH D 49 549 49 HOH HOH . C 3 HOH D 50 550 50 HOH HOH . C 3 HOH D 51 551 51 HOH HOH . C 3 HOH D 52 552 52 HOH HOH . C 3 HOH D 53 553 53 HOH HOH . C 3 HOH D 54 554 54 HOH HOH . C 3 HOH D 55 555 55 HOH HOH . C 3 HOH D 56 556 56 HOH HOH . C 3 HOH D 57 557 57 HOH HOH . C 3 HOH D 58 558 58 HOH HOH . C 3 HOH D 59 559 59 HOH HOH . C 3 HOH D 60 560 60 HOH HOH . C 3 HOH D 61 561 61 HOH HOH . C 3 HOH D 62 562 62 HOH HOH . C 3 HOH D 63 563 63 HOH HOH . C 3 HOH D 64 564 64 HOH HOH . C 3 HOH D 65 565 65 HOH HOH . C 3 HOH D 66 566 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 0VR . . . B 2 19.134 17.555 24.767 1 38.53 ? P 0VR 400 D 1 HETATM 2 O O1P 0VR . . . B 2 20.482 17.884 24.171 1 42.39 ? O1P 0VR 400 D 1 HETATM 3 O O2P 0VR . . . B 2 18.89 18.349 26.042 1 33.9 ? O2P 0VR 400 D 1 HETATM 4 O O3P 0VR . . . B 2 19.187 16.072 25.08 1 36.42 ? O3P 0VR 400 D 1 HETATM 5 O O5' 0VR . . . B 2 17.952 17.92 23.793 1 42.36 ? O5' 0VR 400 D 1 HETATM 6 C C5' 0VR . . . B 2 17.225 16.932 23.112 1 43.6 ? C5' 0VR 400 D 1 HETATM 7 C C4' 0VR . . . B 2 16.153 17.569 22.23 1 41.46 ? C4' 0VR 400 D 1 HETATM 8 O O4' 0VR . . . B 2 15.206 18.158 23.038 1 46.24 ? O4' 0VR 400 D 1 HETATM 9 C C3' 0VR . . . B 2 16.725 18.564 21.229 1 40.56 ? C3' 0VR 400 D 1 HETATM 10 O O3' 0VR . . . B 2 17.767 17.937 20.577 1 55.19 ? O3' 0VR 400 D 1 HETATM 11 C C2' 0VR . . . B 2 15.757 19.036 20.161 1 51.7 ? C2' 0VR 400 D 1 HETATM 12 O O2' 0VR . . . B 2 14.445 18.747 20.445 1 52.46 ? O2' 0VR 400 D 1 HETATM 13 C C1' 0VR . . . B 2 15.843 20.521 19.94 1 61.89 ? C1' 0VR 400 D 1 HETATM 14 N NH 0VR . . . B 2 14.648 20.957 19.205 1 64.96 ? NH 0VR 400 D 1 HETATM 15 C C1 0VR . . . B 2 12.887 22.391 18.956 1 95.33 ? C1 0VR 400 D 1 HETATM 16 C C2 0VR . . . B 2 13.864 22.105 19.64 1 78.34 ? C2 0VR 400 D 1 HETATM 17 C C3 0VR . . . B 2 14.373 22.668 20.771 1 76.47 ? C3 0VR 400 D 1 HETATM 18 C C4 0VR . . . B 2 13.466 23.915 21.193 1 54.23 ? C4 0VR 400 D 1 HETATM 19 C C5 0VR . . . B 2 12.263 24.134 20.199 1 103.63 ? C5 0VR 400 D 1 HETATM 20 C C6 0VR . . . B 2 12.134 23.293 19.162 1 99.98 ? C6 0VR 400 D 1 HETATM 21 C C7 0VR . . . B 2 12.55 21.584 17.742 1 98.97 ? C7 0VR 400 D 1 HETATM 22 O O71 0VR . . . B 2 12.521 20.345 17.962 1 102.56 ? O71 0VR 400 D 1 HETATM 23 O O72 0VR . . . B 2 12.34 22.307 16.735 1 96.24 ? O72 0VR 400 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #