data_4EX9 # _model_server_result.job_id '_XcvjsyGbBq3RIaHnP0vHg' _model_server_result.datetime_utc '2024-11-05 00:41:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ex9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4EX9 # _exptl.entry_id 4EX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EX9 _cell.length_a 168.79 _cell.length_b 168.79 _cell.length_c 168.79 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 145 A ASP 135 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc2 A OD1 ASP 148 A ASP 138 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 B CA CA . A CA 401 1_555 G O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 107 n n N1 C6 EPE sing 108 n n N1 C9 EPE sing 109 n n C2 C3 EPE sing 110 n n C2 H21 EPE sing 111 n n C2 H22 EPE sing 112 n n C3 N4 EPE sing 113 n n C3 H31 EPE sing 114 n n C3 H32 EPE sing 115 n n N4 C5 EPE sing 116 n n N4 C7 EPE sing 117 n n C5 C6 EPE sing 118 n n C5 H51 EPE sing 119 n n C5 H52 EPE sing 120 n n C6 H61 EPE sing 121 n n C6 H62 EPE sing 122 n n C7 C8 EPE sing 123 n n C7 H71 EPE sing 124 n n C7 H72 EPE sing 125 n n C8 O8 EPE sing 126 n n C8 H81 EPE sing 127 n n C8 H82 EPE sing 128 n n O8 HO8 EPE sing 129 n n C9 C10 EPE sing 130 n n C9 H91 EPE sing 131 n n C9 H92 EPE sing 132 n n C10 S EPE sing 133 n n C10 H101 EPE sing 134 n n C10 H102 EPE sing 135 n n S O1S EPE doub 136 n n S O2S EPE doub 137 n n S O3S EPE sing 138 n n O3S HOS3 EPE sing 139 n n # _atom_sites.entry_id 4EX9 _atom_sites.fract_transf_matrix[1][1] 0.005925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 1 CA CA . C 3 5RP A 1 402 1 5RP 5RP . D 2 CA A 1 403 1 CA CA . E 4 EPE A 1 404 1 EPE EPE . F 5 CL A 1 405 1 CL CL . G 6 HOH A 1 501 1 HOH HOH . G 6 HOH A 2 502 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . E 4 8.719 10.692 9.35 0.33 63.67 ? N1 EPE 404 A 1 HETATM 2 C C2 EPE . . . E 4 8.497 12.143 9.34 0.33 63.36 ? C2 EPE 404 A 1 HETATM 3 C C3 EPE . . . E 4 9.413 12.804 10.366 0.33 63.38 ? C3 EPE 404 A 1 HETATM 4 N N4 EPE . . . E 4 10.824 12.524 10.056 0.33 63.38 ? N4 EPE 404 A 1 HETATM 5 C C5 EPE . . . E 4 11.049 11.073 10.004 0.33 63.89 ? C5 EPE 404 A 1 HETATM 6 C C6 EPE . . . E 4 10.118 10.432 8.978 0.33 64.17 ? C6 EPE 404 A 1 HETATM 7 C C7 EPE . . . E 4 11.671 13.114 11.104 0.33 63.21 ? C7 EPE 404 A 1 HETATM 8 C C8 EPE . . . E 4 13.061 12.488 11.078 0.33 63.11 ? C8 EPE 404 A 1 HETATM 9 O O8 EPE . . . E 4 13.901 13.203 10.164 0.33 62.96 ? O8 EPE 404 A 1 HETATM 10 C C9 EPE . . . E 4 7.807 10.036 8.399 0.33 62.6 ? C9 EPE 404 A 1 HETATM 11 C C10 EPE . . . E 4 7.801 8.524 8.616 0.33 61.85 ? C10 EPE 404 A 1 HETATM 12 S S EPE . . . E 4 7.157 7.769 7.28 0.33 60.99 ? S EPE 404 A 1 HETATM 13 O O1S EPE . . . E 4 5.993 8.482 6.841 0.33 60.55 ? O1S EPE 404 A 1 HETATM 14 O O2S EPE . . . E 4 8.129 7.758 6.225 0.33 61.01 ? O2S EPE 404 A 1 HETATM 15 O O3S EPE . . . E 4 6.734 6.234 7.647 0.33 60.37 ? O3S EPE 404 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #