data_4EXA # _model_server_result.job_id G-X2fQ7ZY5I--7ygKRJRvg _model_server_result.datetime_utc '2024-11-24 03:43:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4exa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 4EXA # _exptl.entry_id 4EXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EXA _cell.length_a 94.17 _cell.length_b 120.277 _cell.length_c 151.113 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,O,P 1 1 C,F,J,K,N,Q,T 2 1 D,E,L,M,R,S 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 270 n n PA O2A NAP sing 271 n n PA O5B NAP sing 272 n n PA O3 NAP sing 273 n n O2A HOA2 NAP sing 274 n n O5B C5B NAP sing 275 n n C5B C4B NAP sing 276 n n C5B H51A NAP sing 277 n n C5B H52A NAP sing 278 n n C4B O4B NAP sing 279 n n C4B C3B NAP sing 280 n n C4B H4B NAP sing 281 n n O4B C1B NAP sing 282 n n C3B O3B NAP sing 283 n n C3B C2B NAP sing 284 n n C3B H3B NAP sing 285 n n O3B HO3A NAP sing 286 n n C2B O2B NAP sing 287 n n C2B C1B NAP sing 288 n n C2B H2B NAP sing 289 n n O2B P2B NAP sing 290 n n C1B N9A NAP sing 291 n n C1B H1B NAP sing 292 n n N9A C8A NAP sing 293 n y N9A C4A NAP sing 294 n y C8A N7A NAP doub 295 n y C8A H8A NAP sing 296 n n N7A C5A NAP sing 297 n y C5A C6A NAP sing 298 n y C5A C4A NAP doub 299 n y C6A N6A NAP sing 300 n n C6A N1A NAP doub 301 n y N6A H61A NAP sing 302 n n N6A H62A NAP sing 303 n n N1A C2A NAP sing 304 n y C2A N3A NAP doub 305 n y C2A H2A NAP sing 306 n n N3A C4A NAP sing 307 n y O3 PN NAP sing 308 n n PN O1N NAP doub 309 n n PN O2N NAP sing 310 n n PN O5D NAP sing 311 n n O5D C5D NAP sing 312 n n C5D C4D NAP sing 313 n n C5D H51N NAP sing 314 n n C5D H52N NAP sing 315 n n C4D O4D NAP sing 316 n n C4D C3D NAP sing 317 n n C4D H4D NAP sing 318 n n O4D C1D NAP sing 319 n n C3D O3D NAP sing 320 n n C3D C2D NAP sing 321 n n C3D H3D NAP sing 322 n n O3D HO3N NAP sing 323 n n C2D O2D NAP sing 324 n n C2D C1D NAP sing 325 n n C2D H2D NAP sing 326 n n O2D HO2N NAP sing 327 n n C1D N1N NAP sing 328 n n C1D H1D NAP sing 329 n n N1N C2N NAP sing 330 n y N1N C6N NAP doub 331 n y C2N C3N NAP doub 332 n y C2N H2N NAP sing 333 n n C3N C7N NAP sing 334 n n C3N C4N NAP sing 335 n y C7N O7N NAP doub 336 n n C7N N7N NAP sing 337 n n N7N H71N NAP sing 338 n n N7N H72N NAP sing 339 n n C4N C5N NAP doub 340 n y C4N H4N NAP sing 341 n n C5N C6N NAP sing 342 n y C5N H5N NAP sing 343 n n C6N H6N NAP sing 344 n n P2B O1X NAP doub 345 n n P2B O2X NAP sing 346 n n P2B O3X NAP sing 347 n n O2X HOP2 NAP sing 348 n n O3X HOP3 NAP sing 349 n n # _atom_sites.entry_id 4EXA _atom_sites.fract_transf_matrix[1][1] 0.010619 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAP A 1 301 301 NAP NAP . H 2 NAP B 1 301 301 NAP NAP . I 3 EPE B 1 302 311 EPE EPE . J 2 NAP C 1 301 301 NAP NAP . K 3 EPE C 1 302 311 EPE EPE . L 2 NAP D 1 301 301 NAP NAP . M 2 NAP E 1 301 301 NAP NAP . N 2 NAP F 1 301 301 NAP NAP . O 4 HOH A 1 401 28 HOH HOH . O 4 HOH A 2 402 36 HOH HOH . O 4 HOH A 3 403 39 HOH HOH . O 4 HOH A 4 404 40 HOH HOH . O 4 HOH A 5 405 55 HOH HOH . O 4 HOH A 6 406 69 HOH HOH . O 4 HOH A 7 407 81 HOH HOH . O 4 HOH A 8 408 83 HOH HOH . O 4 HOH A 9 409 85 HOH HOH . O 4 HOH A 10 410 87 HOH HOH . O 4 HOH A 11 411 97 HOH HOH . O 4 HOH A 12 412 99 HOH HOH . O 4 HOH A 13 413 103 HOH HOH . O 4 HOH A 14 414 113 HOH HOH . O 4 HOH A 15 415 118 HOH HOH . P 4 HOH B 1 401 4 HOH HOH . P 4 HOH B 2 402 10 HOH HOH . P 4 HOH B 3 403 19 HOH HOH . P 4 HOH B 4 404 23 HOH HOH . P 4 HOH B 5 405 34 HOH HOH . P 4 HOH B 6 406 38 HOH HOH . P 4 HOH B 7 407 44 HOH HOH . P 4 HOH B 8 408 50 HOH HOH . P 4 HOH B 9 409 51 HOH HOH . P 4 HOH B 10 410 52 HOH HOH . P 4 HOH B 11 411 58 HOH HOH . P 4 HOH B 12 412 82 HOH HOH . P 4 HOH B 13 413 84 HOH HOH . P 4 HOH B 14 414 110 HOH HOH . P 4 HOH B 15 415 111 HOH HOH . P 4 HOH B 16 416 132 HOH HOH . P 4 HOH B 17 417 133 HOH HOH . P 4 HOH B 18 418 135 HOH HOH . Q 4 HOH C 1 401 5 HOH HOH . Q 4 HOH C 2 402 6 HOH HOH . Q 4 HOH C 3 403 8 HOH HOH . Q 4 HOH C 4 404 9 HOH HOH . Q 4 HOH C 5 405 22 HOH HOH . Q 4 HOH C 6 406 24 HOH HOH . Q 4 HOH C 7 407 30 HOH HOH . Q 4 HOH C 8 408 35 HOH HOH . Q 4 HOH C 9 409 46 HOH HOH . Q 4 HOH C 10 410 53 HOH HOH . Q 4 HOH C 11 411 54 HOH HOH . Q 4 HOH C 12 412 68 HOH HOH . Q 4 HOH C 13 413 76 HOH HOH . Q 4 HOH C 14 414 91 HOH HOH . Q 4 HOH C 15 415 101 HOH HOH . Q 4 HOH C 16 416 102 HOH HOH . Q 4 HOH C 17 417 116 HOH HOH . Q 4 HOH C 18 418 128 HOH HOH . Q 4 HOH C 19 419 129 HOH HOH . Q 4 HOH C 20 420 138 HOH HOH . Q 4 HOH C 21 421 140 HOH HOH . R 4 HOH D 1 401 1 HOH HOH . R 4 HOH D 2 402 7 HOH HOH . R 4 HOH D 3 403 16 HOH HOH . R 4 HOH D 4 404 17 HOH HOH . R 4 HOH D 5 405 25 HOH HOH . R 4 HOH D 6 406 26 HOH HOH . R 4 HOH D 7 407 37 HOH HOH . R 4 HOH D 8 408 41 HOH HOH . R 4 HOH D 9 409 57 HOH HOH . R 4 HOH D 10 410 59 HOH HOH . R 4 HOH D 11 411 64 HOH HOH . R 4 HOH D 12 412 66 HOH HOH . R 4 HOH D 13 413 67 HOH HOH . R 4 HOH D 14 414 79 HOH HOH . R 4 HOH D 15 415 80 HOH HOH . R 4 HOH D 16 416 88 HOH HOH . R 4 HOH D 17 417 92 HOH HOH . R 4 HOH D 18 418 93 HOH HOH . R 4 HOH D 19 419 104 HOH HOH . R 4 HOH D 20 420 120 HOH HOH . R 4 HOH D 21 421 121 HOH HOH . R 4 HOH D 22 422 125 HOH HOH . R 4 HOH D 23 423 130 HOH HOH . R 4 HOH D 24 424 142 HOH HOH . R 4 HOH D 25 425 63 HOH HOH . S 4 HOH E 1 401 2 HOH HOH . S 4 HOH E 2 402 11 HOH HOH . S 4 HOH E 3 403 12 HOH HOH . S 4 HOH E 4 404 27 HOH HOH . S 4 HOH E 5 405 32 HOH HOH . S 4 HOH E 6 406 42 HOH HOH . S 4 HOH E 7 407 49 HOH HOH . S 4 HOH E 8 408 60 HOH HOH . S 4 HOH E 9 409 70 HOH HOH . S 4 HOH E 10 410 72 HOH HOH . S 4 HOH E 11 411 78 HOH HOH . S 4 HOH E 12 412 94 HOH HOH . S 4 HOH E 13 413 95 HOH HOH . S 4 HOH E 14 414 109 HOH HOH . S 4 HOH E 15 415 112 HOH HOH . S 4 HOH E 16 416 115 HOH HOH . S 4 HOH E 17 417 123 HOH HOH . S 4 HOH E 18 418 124 HOH HOH . S 4 HOH E 19 419 126 HOH HOH . S 4 HOH E 20 420 134 HOH HOH . S 4 HOH E 21 421 136 HOH HOH . S 4 HOH E 22 422 137 HOH HOH . S 4 HOH E 23 423 139 HOH HOH . S 4 HOH E 24 424 145 HOH HOH . T 4 HOH F 1 401 13 HOH HOH . T 4 HOH F 2 402 15 HOH HOH . T 4 HOH F 3 403 21 HOH HOH . T 4 HOH F 4 404 56 HOH HOH . T 4 HOH F 5 405 61 HOH HOH . T 4 HOH F 6 406 62 HOH HOH . T 4 HOH F 7 407 65 HOH HOH . T 4 HOH F 8 408 71 HOH HOH . T 4 HOH F 9 409 96 HOH HOH . T 4 HOH F 10 410 114 HOH HOH . T 4 HOH F 11 411 131 HOH HOH . T 4 HOH F 12 412 143 HOH HOH . T 4 HOH F 13 413 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . H 2 -8.42 24.352 -15.85 1 57.64 ? PA NAP 301 B 1 HETATM 2 O O1A NAP . . . H 2 -8.849 25.382 -16.805 1 58.12 ? O1A NAP 301 B 1 HETATM 3 O O2A NAP . . . H 2 -8.459 23.029 -16.529 1 57.17 ? O2A NAP 301 B 1 HETATM 4 O O5B NAP . . . H 2 -6.986 24.665 -15.184 1 54.57 ? O5B NAP 301 B 1 HETATM 5 C C5B NAP . . . H 2 -6.376 23.592 -14.502 1 51.12 ? C5B NAP 301 B 1 HETATM 6 C C4B NAP . . . H 2 -4.918 23.834 -14.175 1 48.86 ? C4B NAP 301 B 1 HETATM 7 O O4B NAP . . . H 2 -4.164 24.4 -15.228 1 48.1 ? O4B NAP 301 B 1 HETATM 8 C C3B NAP . . . H 2 -4.764 24.8 -13.018 1 46.68 ? C3B NAP 301 B 1 HETATM 9 O O3B NAP . . . H 2 -4.594 24.099 -11.826 1 45.35 ? O3B NAP 301 B 1 HETATM 10 C C2B NAP . . . H 2 -3.504 25.562 -13.321 1 45.5 ? C2B NAP 301 B 1 HETATM 11 O O2B NAP . . . H 2 -2.601 25.361 -12.272 1 43.39 ? O2B NAP 301 B 1 HETATM 12 C C1B NAP . . . H 2 -3.007 24.938 -14.609 1 46.4 ? C1B NAP 301 B 1 HETATM 13 N N9A NAP . . . H 2 -2.333 25.909 -15.477 1 46.3 ? N9A NAP 301 B 1 HETATM 14 C C8A NAP . . . H 2 -2.884 27.05 -15.989 1 45.96 ? C8A NAP 301 B 1 HETATM 15 N N7A NAP . . . H 2 -1.95 27.666 -16.746 1 46.32 ? N7A NAP 301 B 1 HETATM 16 C C5A NAP . . . H 2 -0.803 26.942 -16.727 1 46.45 ? C5A NAP 301 B 1 HETATM 17 C C6A NAP . . . H 2 0.443 27.133 -17.332 1 45.51 ? C6A NAP 301 B 1 HETATM 18 N N6A NAP . . . H 2 0.659 28.201 -18.103 1 44.86 ? N6A NAP 301 B 1 HETATM 19 N N1A NAP . . . H 2 1.443 26.206 -17.126 1 44.99 ? N1A NAP 301 B 1 HETATM 20 C C2A NAP . . . H 2 1.2 25.102 -16.333 1 45.54 ? C2A NAP 301 B 1 HETATM 21 N N3A NAP . . . H 2 -0.036 24.919 -15.73 1 46.16 ? N3A NAP 301 B 1 HETATM 22 C C4A NAP . . . H 2 -1.03 25.826 -15.924 1 46.57 ? C4A NAP 301 B 1 HETATM 23 O O3 NAP . . . H 2 -9.335 24.367 -14.541 1 58.84 ? O3 NAP 301 B 1 HETATM 24 P PN NAP . . . H 2 -9.886 23.13 -13.663 1 61.73 ? PN NAP 301 B 1 HETATM 25 O O1N NAP . . . H 2 -11.227 22.651 -14.431 1 59.39 ? O1N NAP 301 B 1 HETATM 26 O O2N NAP . . . H 2 -8.926 21.988 -13.733 1 59.64 ? O2N NAP 301 B 1 HETATM 27 O O5D NAP . . . H 2 -10.265 23.757 -12.359 1 60.52 ? O5D NAP 301 B 1 HETATM 28 P P2B NAP . . . H 2 -1.527 26.477 -11.852 1 40.45 ? P2B NAP 301 B 1 HETATM 29 O O1X NAP . . . H 2 -0.325 25.608 -11.553 1 40.86 ? O1X NAP 301 B 1 HETATM 30 O O2X NAP . . . H 2 -2.002 27.331 -10.696 1 38.26 ? O2X NAP 301 B 1 HETATM 31 O O3X NAP . . . H 2 -1.227 27.376 -13.032 1 41.33 ? O3X NAP 301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #