data_4EXA
#
_model_server_result.job_id            TdA4OYnWRD3qIlLHLPFkaQ 
_model_server_result.datetime_utc      '2024-11-01 07:18:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4exa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    4EXA 
#
_exptl.entry_id    4EXA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4EXA 
_cell.length_a            94.17 
_cell.length_b            120.277 
_cell.length_c            151.113 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EXA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,O,P 1 1 
C,F,J,K,N,Q,T 2 1 
D,E,L,M,R,S 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 270 n n 
PA O2A NAP sing 271 n n 
PA O5B NAP sing 272 n n 
PA O3 NAP sing 273 n n 
O2A HOA2 NAP sing 274 n n 
O5B C5B NAP sing 275 n n 
C5B C4B NAP sing 276 n n 
C5B H51A NAP sing 277 n n 
C5B H52A NAP sing 278 n n 
C4B O4B NAP sing 279 n n 
C4B C3B NAP sing 280 n n 
C4B H4B NAP sing 281 n n 
O4B C1B NAP sing 282 n n 
C3B O3B NAP sing 283 n n 
C3B C2B NAP sing 284 n n 
C3B H3B NAP sing 285 n n 
O3B HO3A NAP sing 286 n n 
C2B O2B NAP sing 287 n n 
C2B C1B NAP sing 288 n n 
C2B H2B NAP sing 289 n n 
O2B P2B NAP sing 290 n n 
C1B N9A NAP sing 291 n n 
C1B H1B NAP sing 292 n n 
N9A C8A NAP sing 293 n y 
N9A C4A NAP sing 294 n y 
C8A N7A NAP doub 295 n y 
C8A H8A NAP sing 296 n n 
N7A C5A NAP sing 297 n y 
C5A C6A NAP sing 298 n y 
C5A C4A NAP doub 299 n y 
C6A N6A NAP sing 300 n n 
C6A N1A NAP doub 301 n y 
N6A H61A NAP sing 302 n n 
N6A H62A NAP sing 303 n n 
N1A C2A NAP sing 304 n y 
C2A N3A NAP doub 305 n y 
C2A H2A NAP sing 306 n n 
N3A C4A NAP sing 307 n y 
O3 PN NAP sing 308 n n 
PN O1N NAP doub 309 n n 
PN O2N NAP sing 310 n n 
PN O5D NAP sing 311 n n 
O5D C5D NAP sing 312 n n 
C5D C4D NAP sing 313 n n 
C5D H51N NAP sing 314 n n 
C5D H52N NAP sing 315 n n 
C4D O4D NAP sing 316 n n 
C4D C3D NAP sing 317 n n 
C4D H4D NAP sing 318 n n 
O4D C1D NAP sing 319 n n 
C3D O3D NAP sing 320 n n 
C3D C2D NAP sing 321 n n 
C3D H3D NAP sing 322 n n 
O3D HO3N NAP sing 323 n n 
C2D O2D NAP sing 324 n n 
C2D C1D NAP sing 325 n n 
C2D H2D NAP sing 326 n n 
O2D HO2N NAP sing 327 n n 
C1D N1N NAP sing 328 n n 
C1D H1D NAP sing 329 n n 
N1N C2N NAP sing 330 n y 
N1N C6N NAP doub 331 n y 
C2N C3N NAP doub 332 n y 
C2N H2N NAP sing 333 n n 
C3N C7N NAP sing 334 n n 
C3N C4N NAP sing 335 n y 
C7N O7N NAP doub 336 n n 
C7N N7N NAP sing 337 n n 
N7N H71N NAP sing 338 n n 
N7N H72N NAP sing 339 n n 
C4N C5N NAP doub 340 n y 
C4N H4N NAP sing 341 n n 
C5N C6N NAP sing 342 n y 
C5N H5N NAP sing 343 n n 
C6N H6N NAP sing 344 n n 
P2B O1X NAP doub 345 n n 
P2B O2X NAP sing 346 n n 
P2B O3X NAP sing 347 n n 
O2X HOP2 NAP sing 348 n n 
O3X HOP3 NAP sing 349 n n 
#
_atom_sites.entry_id                     4EXA 
_atom_sites.fract_transf_matrix[1][1]    0.010619 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008314 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006618 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAP A 1 301 301 NAP NAP . 
H 2 NAP B 1 301 301 NAP NAP . 
I 3 EPE B 1 302 311 EPE EPE . 
J 2 NAP C 1 301 301 NAP NAP . 
K 3 EPE C 1 302 311 EPE EPE . 
L 2 NAP D 1 301 301 NAP NAP . 
M 2 NAP E 1 301 301 NAP NAP . 
N 2 NAP F 1 301 301 NAP NAP . 
O 4 HOH A 1 401 28 HOH HOH . 
O 4 HOH A 2 402 36 HOH HOH . 
O 4 HOH A 3 403 39 HOH HOH . 
O 4 HOH A 4 404 40 HOH HOH . 
O 4 HOH A 5 405 55 HOH HOH . 
O 4 HOH A 6 406 69 HOH HOH . 
O 4 HOH A 7 407 81 HOH HOH . 
O 4 HOH A 8 408 83 HOH HOH . 
O 4 HOH A 9 409 85 HOH HOH . 
O 4 HOH A 10 410 87 HOH HOH . 
O 4 HOH A 11 411 97 HOH HOH . 
O 4 HOH A 12 412 99 HOH HOH . 
O 4 HOH A 13 413 103 HOH HOH . 
O 4 HOH A 14 414 113 HOH HOH . 
O 4 HOH A 15 415 118 HOH HOH . 
P 4 HOH B 1 401 4 HOH HOH . 
P 4 HOH B 2 402 10 HOH HOH . 
P 4 HOH B 3 403 19 HOH HOH . 
P 4 HOH B 4 404 23 HOH HOH . 
P 4 HOH B 5 405 34 HOH HOH . 
P 4 HOH B 6 406 38 HOH HOH . 
P 4 HOH B 7 407 44 HOH HOH . 
P 4 HOH B 8 408 50 HOH HOH . 
P 4 HOH B 9 409 51 HOH HOH . 
P 4 HOH B 10 410 52 HOH HOH . 
P 4 HOH B 11 411 58 HOH HOH . 
P 4 HOH B 12 412 82 HOH HOH . 
P 4 HOH B 13 413 84 HOH HOH . 
P 4 HOH B 14 414 110 HOH HOH . 
P 4 HOH B 15 415 111 HOH HOH . 
P 4 HOH B 16 416 132 HOH HOH . 
P 4 HOH B 17 417 133 HOH HOH . 
P 4 HOH B 18 418 135 HOH HOH . 
Q 4 HOH C 1 401 5 HOH HOH . 
Q 4 HOH C 2 402 6 HOH HOH . 
Q 4 HOH C 3 403 8 HOH HOH . 
Q 4 HOH C 4 404 9 HOH HOH . 
Q 4 HOH C 5 405 22 HOH HOH . 
Q 4 HOH C 6 406 24 HOH HOH . 
Q 4 HOH C 7 407 30 HOH HOH . 
Q 4 HOH C 8 408 35 HOH HOH . 
Q 4 HOH C 9 409 46 HOH HOH . 
Q 4 HOH C 10 410 53 HOH HOH . 
Q 4 HOH C 11 411 54 HOH HOH . 
Q 4 HOH C 12 412 68 HOH HOH . 
Q 4 HOH C 13 413 76 HOH HOH . 
Q 4 HOH C 14 414 91 HOH HOH . 
Q 4 HOH C 15 415 101 HOH HOH . 
Q 4 HOH C 16 416 102 HOH HOH . 
Q 4 HOH C 17 417 116 HOH HOH . 
Q 4 HOH C 18 418 128 HOH HOH . 
Q 4 HOH C 19 419 129 HOH HOH . 
Q 4 HOH C 20 420 138 HOH HOH . 
Q 4 HOH C 21 421 140 HOH HOH . 
R 4 HOH D 1 401 1 HOH HOH . 
R 4 HOH D 2 402 7 HOH HOH . 
R 4 HOH D 3 403 16 HOH HOH . 
R 4 HOH D 4 404 17 HOH HOH . 
R 4 HOH D 5 405 25 HOH HOH . 
R 4 HOH D 6 406 26 HOH HOH . 
R 4 HOH D 7 407 37 HOH HOH . 
R 4 HOH D 8 408 41 HOH HOH . 
R 4 HOH D 9 409 57 HOH HOH . 
R 4 HOH D 10 410 59 HOH HOH . 
R 4 HOH D 11 411 64 HOH HOH . 
R 4 HOH D 12 412 66 HOH HOH . 
R 4 HOH D 13 413 67 HOH HOH . 
R 4 HOH D 14 414 79 HOH HOH . 
R 4 HOH D 15 415 80 HOH HOH . 
R 4 HOH D 16 416 88 HOH HOH . 
R 4 HOH D 17 417 92 HOH HOH . 
R 4 HOH D 18 418 93 HOH HOH . 
R 4 HOH D 19 419 104 HOH HOH . 
R 4 HOH D 20 420 120 HOH HOH . 
R 4 HOH D 21 421 121 HOH HOH . 
R 4 HOH D 22 422 125 HOH HOH . 
R 4 HOH D 23 423 130 HOH HOH . 
R 4 HOH D 24 424 142 HOH HOH . 
R 4 HOH D 25 425 63 HOH HOH . 
S 4 HOH E 1 401 2 HOH HOH . 
S 4 HOH E 2 402 11 HOH HOH . 
S 4 HOH E 3 403 12 HOH HOH . 
S 4 HOH E 4 404 27 HOH HOH . 
S 4 HOH E 5 405 32 HOH HOH . 
S 4 HOH E 6 406 42 HOH HOH . 
S 4 HOH E 7 407 49 HOH HOH . 
S 4 HOH E 8 408 60 HOH HOH . 
S 4 HOH E 9 409 70 HOH HOH . 
S 4 HOH E 10 410 72 HOH HOH . 
S 4 HOH E 11 411 78 HOH HOH . 
S 4 HOH E 12 412 94 HOH HOH . 
S 4 HOH E 13 413 95 HOH HOH . 
S 4 HOH E 14 414 109 HOH HOH . 
S 4 HOH E 15 415 112 HOH HOH . 
S 4 HOH E 16 416 115 HOH HOH . 
S 4 HOH E 17 417 123 HOH HOH . 
S 4 HOH E 18 418 124 HOH HOH . 
S 4 HOH E 19 419 126 HOH HOH . 
S 4 HOH E 20 420 134 HOH HOH . 
S 4 HOH E 21 421 136 HOH HOH . 
S 4 HOH E 22 422 137 HOH HOH . 
S 4 HOH E 23 423 139 HOH HOH . 
S 4 HOH E 24 424 145 HOH HOH . 
T 4 HOH F 1 401 13 HOH HOH . 
T 4 HOH F 2 402 15 HOH HOH . 
T 4 HOH F 3 403 21 HOH HOH . 
T 4 HOH F 4 404 56 HOH HOH . 
T 4 HOH F 5 405 61 HOH HOH . 
T 4 HOH F 6 406 62 HOH HOH . 
T 4 HOH F 7 407 65 HOH HOH . 
T 4 HOH F 8 408 71 HOH HOH . 
T 4 HOH F 9 409 96 HOH HOH . 
T 4 HOH F 10 410 114 HOH HOH . 
T 4 HOH F 11 411 131 HOH HOH . 
T 4 HOH F 12 412 143 HOH HOH . 
T 4 HOH F 13 413 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . H 2 -8.42 24.352 -15.85 1 57.64 ? PA NAP 301 B 1 
HETATM 2 O O1A NAP . . . H 2 -8.849 25.382 -16.805 1 58.12 ? O1A NAP 301 B 1 
HETATM 3 O O2A NAP . . . H 2 -8.459 23.029 -16.529 1 57.17 ? O2A NAP 301 B 1 
HETATM 4 O O5B NAP . . . H 2 -6.986 24.665 -15.184 1 54.57 ? O5B NAP 301 B 1 
HETATM 5 C C5B NAP . . . H 2 -6.376 23.592 -14.502 1 51.12 ? C5B NAP 301 B 1 
HETATM 6 C C4B NAP . . . H 2 -4.918 23.834 -14.175 1 48.86 ? C4B NAP 301 B 1 
HETATM 7 O O4B NAP . . . H 2 -4.164 24.4 -15.228 1 48.1 ? O4B NAP 301 B 1 
HETATM 8 C C3B NAP . . . H 2 -4.764 24.8 -13.018 1 46.68 ? C3B NAP 301 B 1 
HETATM 9 O O3B NAP . . . H 2 -4.594 24.099 -11.826 1 45.35 ? O3B NAP 301 B 1 
HETATM 10 C C2B NAP . . . H 2 -3.504 25.562 -13.321 1 45.5 ? C2B NAP 301 B 1 
HETATM 11 O O2B NAP . . . H 2 -2.601 25.361 -12.272 1 43.39 ? O2B NAP 301 B 1 
HETATM 12 C C1B NAP . . . H 2 -3.007 24.938 -14.609 1 46.4 ? C1B NAP 301 B 1 
HETATM 13 N N9A NAP . . . H 2 -2.333 25.909 -15.477 1 46.3 ? N9A NAP 301 B 1 
HETATM 14 C C8A NAP . . . H 2 -2.884 27.05 -15.989 1 45.96 ? C8A NAP 301 B 1 
HETATM 15 N N7A NAP . . . H 2 -1.95 27.666 -16.746 1 46.32 ? N7A NAP 301 B 1 
HETATM 16 C C5A NAP . . . H 2 -0.803 26.942 -16.727 1 46.45 ? C5A NAP 301 B 1 
HETATM 17 C C6A NAP . . . H 2 0.443 27.133 -17.332 1 45.51 ? C6A NAP 301 B 1 
HETATM 18 N N6A NAP . . . H 2 0.659 28.201 -18.103 1 44.86 ? N6A NAP 301 B 1 
HETATM 19 N N1A NAP . . . H 2 1.443 26.206 -17.126 1 44.99 ? N1A NAP 301 B 1 
HETATM 20 C C2A NAP . . . H 2 1.2 25.102 -16.333 1 45.54 ? C2A NAP 301 B 1 
HETATM 21 N N3A NAP . . . H 2 -0.036 24.919 -15.73 1 46.16 ? N3A NAP 301 B 1 
HETATM 22 C C4A NAP . . . H 2 -1.03 25.826 -15.924 1 46.57 ? C4A NAP 301 B 1 
HETATM 23 O O3 NAP . . . H 2 -9.335 24.367 -14.541 1 58.84 ? O3 NAP 301 B 1 
HETATM 24 P PN NAP . . . H 2 -9.886 23.13 -13.663 1 61.73 ? PN NAP 301 B 1 
HETATM 25 O O1N NAP . . . H 2 -11.227 22.651 -14.431 1 59.39 ? O1N NAP 301 B 1 
HETATM 26 O O2N NAP . . . H 2 -8.926 21.988 -13.733 1 59.64 ? O2N NAP 301 B 1 
HETATM 27 O O5D NAP . . . H 2 -10.265 23.757 -12.359 1 60.52 ? O5D NAP 301 B 1 
HETATM 28 P P2B NAP . . . H 2 -1.527 26.477 -11.852 1 40.45 ? P2B NAP 301 B 1 
HETATM 29 O O1X NAP . . . H 2 -0.325 25.608 -11.553 1 40.86 ? O1X NAP 301 B 1 
HETATM 30 O O2X NAP . . . H 2 -2.002 27.331 -10.696 1 38.26 ? O2X NAP 301 B 1 
HETATM 31 O O3X NAP . . . H 2 -1.227 27.376 -13.032 1 41.33 ? O3X NAP 301 B 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           31 
#