data_4EXO # _model_server_result.job_id Jh6OniIHVQcOfBfvkwdU5Q _model_server_result.datetime_utc '2025-01-20 05:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4exo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4EXO # _exptl.entry_id 4EXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.062 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRUVIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EXO _cell.length_a 112.268 _cell.length_b 112.268 _cell.length_c 62.731 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 56.134 56.134 31.3655 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 21 A TYR 28 1_555 A N MSE 22 A MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale2 A C MSE 22 A MSE 29 1_555 A N MSE 23 A MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 23 A MSE 30 1_555 A N MSE 24 A MSE 31 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 23 A MSE 30 1_555 A N MSE 24 A MSE 31 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C MSE 24 A MSE 31 1_555 A N GLY 25 A GLY 32 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 24 A MSE 31 1_555 A N GLY 25 A GLY 32 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C ALA 51 A ALA 58 1_555 A N MSE 52 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale8 A C MSE 52 A MSE 59 1_555 A N ARG 53 A ARG 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C3 H4 O3' _chem_comp.formula_weight 88.062 _chem_comp.id PYR _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O PYR doub 264 n n C OXT PYR sing 265 n n C CA PYR sing 266 n n OXT HXT PYR sing 267 n n CA O3 PYR doub 268 n n CA CB PYR sing 269 n n CB HB1 PYR sing 270 n n CB HB2 PYR sing 271 n n CB HB3 PYR sing 272 n n # _atom_sites.entry_id 4EXO _atom_sites.fract_transf_matrix[1][1] 0.008907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PYR A 1 201 1 PYR PYR . C 3 HOH A 1 301 176 HOH HOH . C 3 HOH A 2 302 177 HOH HOH . C 3 HOH A 3 303 178 HOH HOH . C 3 HOH A 4 304 179 HOH HOH . C 3 HOH A 5 305 180 HOH HOH . C 3 HOH A 6 306 181 HOH HOH . C 3 HOH A 7 307 182 HOH HOH . C 3 HOH A 8 308 183 HOH HOH . C 3 HOH A 9 309 184 HOH HOH . C 3 HOH A 10 310 185 HOH HOH . C 3 HOH A 11 311 186 HOH HOH . C 3 HOH A 12 312 187 HOH HOH . C 3 HOH A 13 313 188 HOH HOH . C 3 HOH A 14 314 189 HOH HOH . C 3 HOH A 15 315 190 HOH HOH . C 3 HOH A 16 316 191 HOH HOH . C 3 HOH A 17 317 192 HOH HOH . C 3 HOH A 18 318 193 HOH HOH . C 3 HOH A 19 319 194 HOH HOH . C 3 HOH A 20 320 195 HOH HOH . C 3 HOH A 21 321 196 HOH HOH . C 3 HOH A 22 322 197 HOH HOH . C 3 HOH A 23 323 198 HOH HOH . C 3 HOH A 24 324 199 HOH HOH . C 3 HOH A 25 325 200 HOH HOH . C 3 HOH A 26 326 201 HOH HOH . C 3 HOH A 27 327 202 HOH HOH . C 3 HOH A 28 328 203 HOH HOH . C 3 HOH A 29 329 204 HOH HOH . C 3 HOH A 30 330 205 HOH HOH . C 3 HOH A 31 331 206 HOH HOH . C 3 HOH A 32 332 207 HOH HOH . C 3 HOH A 33 333 208 HOH HOH . C 3 HOH A 34 334 209 HOH HOH . C 3 HOH A 35 335 210 HOH HOH . C 3 HOH A 36 336 211 HOH HOH . C 3 HOH A 37 337 212 HOH HOH . C 3 HOH A 38 338 213 HOH HOH . C 3 HOH A 39 339 214 HOH HOH . C 3 HOH A 40 340 215 HOH HOH . C 3 HOH A 41 341 216 HOH HOH . C 3 HOH A 42 342 217 HOH HOH . C 3 HOH A 43 343 218 HOH HOH . C 3 HOH A 44 344 219 HOH HOH . C 3 HOH A 45 345 220 HOH HOH . C 3 HOH A 46 346 221 HOH HOH . C 3 HOH A 47 347 222 HOH HOH . C 3 HOH A 48 348 223 HOH HOH . C 3 HOH A 49 349 224 HOH HOH . C 3 HOH A 50 350 225 HOH HOH . C 3 HOH A 51 351 226 HOH HOH . C 3 HOH A 52 352 227 HOH HOH . C 3 HOH A 53 353 228 HOH HOH . C 3 HOH A 54 354 229 HOH HOH . C 3 HOH A 55 355 230 HOH HOH . C 3 HOH A 56 356 231 HOH HOH . C 3 HOH A 57 357 232 HOH HOH . C 3 HOH A 58 358 233 HOH HOH . C 3 HOH A 59 359 234 HOH HOH . C 3 HOH A 60 360 235 HOH HOH . C 3 HOH A 61 361 236 HOH HOH . C 3 HOH A 62 362 237 HOH HOH . C 3 HOH A 63 363 238 HOH HOH . C 3 HOH A 64 364 239 HOH HOH . C 3 HOH A 65 365 240 HOH HOH . C 3 HOH A 66 366 241 HOH HOH . C 3 HOH A 67 367 242 HOH HOH . C 3 HOH A 68 368 243 HOH HOH . C 3 HOH A 69 369 244 HOH HOH . C 3 HOH A 70 370 245 HOH HOH . C 3 HOH A 71 371 246 HOH HOH . C 3 HOH A 72 372 247 HOH HOH . C 3 HOH A 73 373 248 HOH HOH . C 3 HOH A 74 374 249 HOH HOH . C 3 HOH A 75 375 250 HOH HOH . C 3 HOH A 76 376 251 HOH HOH . C 3 HOH A 77 377 252 HOH HOH . C 3 HOH A 78 378 253 HOH HOH . C 3 HOH A 79 379 255 HOH HOH . C 3 HOH A 80 380 256 HOH HOH . C 3 HOH A 81 381 257 HOH HOH . C 3 HOH A 82 382 258 HOH HOH . C 3 HOH A 83 383 259 HOH HOH . C 3 HOH A 84 384 260 HOH HOH . C 3 HOH A 85 385 261 HOH HOH . C 3 HOH A 86 386 262 HOH HOH . C 3 HOH A 87 387 263 HOH HOH . C 3 HOH A 88 388 264 HOH HOH . C 3 HOH A 89 389 265 HOH HOH . C 3 HOH A 90 390 266 HOH HOH . C 3 HOH A 91 391 267 HOH HOH . C 3 HOH A 92 392 268 HOH HOH . C 3 HOH A 93 393 269 HOH HOH . C 3 HOH A 94 394 270 HOH HOH . C 3 HOH A 95 395 271 HOH HOH . C 3 HOH A 96 396 272 HOH HOH . C 3 HOH A 97 397 273 HOH HOH . C 3 HOH A 98 398 274 HOH HOH . C 3 HOH A 99 399 275 HOH HOH . C 3 HOH A 100 400 276 HOH HOH . C 3 HOH A 101 401 277 HOH HOH . C 3 HOH A 102 402 278 HOH HOH . C 3 HOH A 103 403 279 HOH HOH . C 3 HOH A 104 404 280 HOH HOH . C 3 HOH A 105 405 281 HOH HOH . C 3 HOH A 106 406 282 HOH HOH . C 3 HOH A 107 407 283 HOH HOH . C 3 HOH A 108 408 284 HOH HOH . C 3 HOH A 109 409 285 HOH HOH . C 3 HOH A 110 410 286 HOH HOH . C 3 HOH A 111 411 287 HOH HOH . C 3 HOH A 112 412 288 HOH HOH . C 3 HOH A 113 413 289 HOH HOH . C 3 HOH A 114 414 291 HOH HOH . C 3 HOH A 115 415 292 HOH HOH . C 3 HOH A 116 416 293 HOH HOH . C 3 HOH A 117 417 294 HOH HOH . C 3 HOH A 118 418 295 HOH HOH . C 3 HOH A 119 419 296 HOH HOH . C 3 HOH A 120 420 297 HOH HOH . C 3 HOH A 121 421 298 HOH HOH . C 3 HOH A 122 422 299 HOH HOH . C 3 HOH A 123 423 300 HOH HOH . C 3 HOH A 124 424 301 HOH HOH . C 3 HOH A 125 425 302 HOH HOH . C 3 HOH A 126 426 303 HOH HOH . C 3 HOH A 127 427 304 HOH HOH . C 3 HOH A 128 428 306 HOH HOH . C 3 HOH A 129 429 307 HOH HOH . C 3 HOH A 130 430 308 HOH HOH . C 3 HOH A 131 431 309 HOH HOH . C 3 HOH A 132 432 310 HOH HOH . C 3 HOH A 133 433 311 HOH HOH . C 3 HOH A 134 434 314 HOH HOH . C 3 HOH A 135 435 315 HOH HOH . C 3 HOH A 136 436 316 HOH HOH . C 3 HOH A 137 437 317 HOH HOH . C 3 HOH A 138 438 318 HOH HOH . C 3 HOH A 139 439 319 HOH HOH . C 3 HOH A 140 440 320 HOH HOH . C 3 HOH A 141 441 321 HOH HOH . C 3 HOH A 142 442 322 HOH HOH . C 3 HOH A 143 443 323 HOH HOH . C 3 HOH A 144 444 326 HOH HOH . C 3 HOH A 145 445 327 HOH HOH . C 3 HOH A 146 446 328 HOH HOH . C 3 HOH A 147 447 331 HOH HOH . C 3 HOH A 148 448 332 HOH HOH . C 3 HOH A 149 449 333 HOH HOH . C 3 HOH A 150 450 334 HOH HOH . C 3 HOH A 151 451 335 HOH HOH . C 3 HOH A 152 452 339 HOH HOH . C 3 HOH A 153 453 341 HOH HOH . C 3 HOH A 154 454 342 HOH HOH . C 3 HOH A 155 455 343 HOH HOH . C 3 HOH A 156 456 344 HOH HOH . C 3 HOH A 157 457 345 HOH HOH . C 3 HOH A 158 458 346 HOH HOH . C 3 HOH A 159 459 354 HOH HOH . C 3 HOH A 160 460 355 HOH HOH . C 3 HOH A 161 461 360 HOH HOH . C 3 HOH A 162 462 361 HOH HOH . C 3 HOH A 163 463 362 HOH HOH . C 3 HOH A 164 464 363 HOH HOH . C 3 HOH A 165 465 364 HOH HOH . C 3 HOH A 166 466 368 HOH HOH . C 3 HOH A 167 467 369 HOH HOH . C 3 HOH A 168 468 372 HOH HOH . C 3 HOH A 169 469 376 HOH HOH . C 3 HOH A 170 470 377 HOH HOH . C 3 HOH A 171 471 391 HOH HOH . C 3 HOH A 172 472 393 HOH HOH . C 3 HOH A 173 473 400 HOH HOH . C 3 HOH A 174 474 402 HOH HOH . C 3 HOH A 175 475 405 HOH HOH . C 3 HOH A 176 476 408 HOH HOH . C 3 HOH A 177 477 413 HOH HOH . C 3 HOH A 178 478 415 HOH HOH . C 3 HOH A 179 479 420 HOH HOH . C 3 HOH A 180 480 423 HOH HOH . C 3 HOH A 181 481 1 HOH HOH . C 3 HOH A 182 482 2 HOH HOH . C 3 HOH A 183 483 3 HOH HOH . C 3 HOH A 184 484 1 HOH HOH . C 3 HOH A 185 485 2 HOH HOH . C 3 HOH A 186 486 3 HOH HOH . C 3 HOH A 187 487 4 HOH HOH . C 3 HOH A 188 488 5 HOH HOH . C 3 HOH A 189 489 6 HOH HOH . C 3 HOH A 190 490 7 HOH HOH . C 3 HOH A 191 491 8 HOH HOH . C 3 HOH A 192 492 9 HOH HOH . C 3 HOH A 193 493 10 HOH HOH . C 3 HOH A 194 494 11 HOH HOH . C 3 HOH A 195 495 12 HOH HOH . C 3 HOH A 196 496 13 HOH HOH . C 3 HOH A 197 497 14 HOH HOH . C 3 HOH A 198 498 15 HOH HOH . C 3 HOH A 199 499 18 HOH HOH . C 3 HOH A 200 500 19 HOH HOH . C 3 HOH A 201 501 20 HOH HOH . C 3 HOH A 202 502 21 HOH HOH . C 3 HOH A 203 503 22 HOH HOH . C 3 HOH A 204 504 23 HOH HOH . C 3 HOH A 205 505 24 HOH HOH . C 3 HOH A 206 506 25 HOH HOH . C 3 HOH A 207 507 26 HOH HOH . C 3 HOH A 208 508 27 HOH HOH . C 3 HOH A 209 509 28 HOH HOH . C 3 HOH A 210 510 29 HOH HOH . C 3 HOH A 211 511 30 HOH HOH . C 3 HOH A 212 512 31 HOH HOH . C 3 HOH A 213 513 32 HOH HOH . C 3 HOH A 214 514 33 HOH HOH . C 3 HOH A 215 515 34 HOH HOH . C 3 HOH A 216 516 36 HOH HOH . C 3 HOH A 217 517 37 HOH HOH . C 3 HOH A 218 518 38 HOH HOH . C 3 HOH A 219 519 39 HOH HOH . C 3 HOH A 220 520 40 HOH HOH . C 3 HOH A 221 521 41 HOH HOH . C 3 HOH A 222 522 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C PYR . . . B 2 40.83 39.119 19.528 1 20.67 ? C PYR 201 A 1 HETATM 2 O O PYR . . . B 2 41.576 38.048 19.359 1 20.01 ? O PYR 201 A 1 HETATM 3 O OXT PYR . . . B 2 39.93 39.121 20.492 1 19.95 ? OXT PYR 201 A 1 HETATM 4 C CA PYR . . . B 2 40.989 40.258 18.705 1 21.76 ? CA PYR 201 A 1 HETATM 5 O O3 PYR . . . B 2 40.219 41.254 18.942 1 19.66 ? O3 PYR 201 A 1 HETATM 6 C CB PYR . . . B 2 42.026 40.38 17.595 1 20.45 ? CB PYR 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 1176 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #