data_4EXP # _model_server_result.job_id K7QTFrdph5p184fSdeTTcQ _model_server_result.datetime_utc '2025-02-27 01:58:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4exp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2000}' # _entry.id 4EXP # _exptl.entry_id 4EXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EXP _cell.length_a 44.713 _cell.length_b 135.34 _cell.length_c 203.488 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_754 -x+2,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 89.426 0 -101.744 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 35 1_555 A SG CYS 160 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 157 A CYS 177 1_555 A SG CYS 171 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 26 X CYS 42 1_555 B SG CYS 68 X CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 B SG CYS 111 X CYS 127 1_555 B SG CYS 161 X CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 B SG CYS 208 X CYS 224 1_555 B SG CYS 262 X CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 56 A ASN 76 1_555 C C1 NAG . A NAG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 80 A ASN 100 1_555 D C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 B ND2 ASN 29 X ASN 45 1_555 E C1 NAG . X NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 B ND2 ASN 57 X ASN 73 1_555 F C1 NAG . X NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4EXP _atom_sites.fract_transf_matrix[1][1] 0.022365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 2000 2000 NAG NAG . D 3 NAG A 1 2001 2001 NAG NAG . E 3 NAG X 1 1000 1000 NAG NAG . F 3 NAG X 1 1001 1001 NAG NAG . G 4 HOH A 1 2101 1 HOH WAT . G 4 HOH A 2 2102 2 HOH WAT . G 4 HOH A 3 2103 3 HOH WAT . G 4 HOH A 4 2104 4 HOH WAT . G 4 HOH A 5 2105 5 HOH WAT . G 4 HOH A 6 2106 6 HOH WAT . G 4 HOH A 7 2107 7 HOH WAT . G 4 HOH A 8 2108 8 HOH WAT . G 4 HOH A 9 2109 13 HOH WAT . G 4 HOH A 10 2110 16 HOH WAT . G 4 HOH A 11 2111 17 HOH WAT . G 4 HOH A 12 2112 18 HOH WAT . G 4 HOH A 13 2113 20 HOH WAT . G 4 HOH A 14 2114 22 HOH WAT . G 4 HOH A 15 2115 23 HOH WAT . G 4 HOH A 16 2116 24 HOH WAT . G 4 HOH A 17 2117 28 HOH WAT . G 4 HOH A 18 2118 29 HOH WAT . G 4 HOH A 19 2119 30 HOH WAT . G 4 HOH A 20 2120 32 HOH WAT . G 4 HOH A 21 2121 34 HOH WAT . G 4 HOH A 22 2122 36 HOH WAT . G 4 HOH A 23 2123 39 HOH WAT . G 4 HOH A 24 2124 41 HOH WAT . G 4 HOH A 25 2125 42 HOH WAT . G 4 HOH A 26 2126 43 HOH WAT . G 4 HOH A 27 2127 44 HOH WAT . G 4 HOH A 28 2128 45 HOH WAT . G 4 HOH A 29 2129 47 HOH WAT . G 4 HOH A 30 2130 49 HOH WAT . G 4 HOH A 31 2131 50 HOH WAT . G 4 HOH A 32 2132 52 HOH WAT . G 4 HOH A 33 2133 53 HOH WAT . G 4 HOH A 34 2134 54 HOH WAT . G 4 HOH A 35 2135 55 HOH WAT . G 4 HOH A 36 2136 58 HOH WAT . G 4 HOH A 37 2137 61 HOH WAT . G 4 HOH A 38 2138 62 HOH WAT . G 4 HOH A 39 2139 64 HOH WAT . G 4 HOH A 40 2140 65 HOH WAT . G 4 HOH A 41 2141 68 HOH WAT . G 4 HOH A 42 2142 69 HOH WAT . G 4 HOH A 43 2143 73 HOH WAT . G 4 HOH A 44 2144 76 HOH WAT . G 4 HOH A 45 2145 78 HOH WAT . G 4 HOH A 46 2146 81 HOH WAT . G 4 HOH A 47 2147 84 HOH WAT . G 4 HOH A 48 2148 86 HOH WAT . G 4 HOH A 49 2149 88 HOH WAT . G 4 HOH A 50 2150 89 HOH WAT . G 4 HOH A 51 2151 90 HOH WAT . G 4 HOH A 52 2152 93 HOH WAT . G 4 HOH A 53 2153 96 HOH WAT . G 4 HOH A 54 2154 98 HOH WAT . G 4 HOH A 55 2155 99 HOH WAT . G 4 HOH A 56 2156 100 HOH WAT . G 4 HOH A 57 2157 101 HOH WAT . G 4 HOH A 58 2158 102 HOH WAT . G 4 HOH A 59 2159 104 HOH WAT . G 4 HOH A 60 2160 105 HOH WAT . G 4 HOH A 61 2161 108 HOH WAT . G 4 HOH A 62 2162 111 HOH WAT . G 4 HOH A 63 2163 112 HOH WAT . G 4 HOH A 64 2164 113 HOH WAT . G 4 HOH A 65 2165 114 HOH WAT . G 4 HOH A 66 2166 121 HOH WAT . G 4 HOH A 67 2167 123 HOH WAT . G 4 HOH A 68 2168 124 HOH WAT . G 4 HOH A 69 2169 127 HOH WAT . G 4 HOH A 70 2170 129 HOH WAT . G 4 HOH A 71 2171 130 HOH WAT . G 4 HOH A 72 2172 132 HOH WAT . G 4 HOH A 73 2173 133 HOH WAT . G 4 HOH A 74 2174 134 HOH WAT . G 4 HOH A 75 2175 138 HOH WAT . G 4 HOH A 76 2176 140 HOH WAT . G 4 HOH A 77 2177 143 HOH WAT . G 4 HOH A 78 2178 145 HOH WAT . G 4 HOH A 79 2179 146 HOH WAT . G 4 HOH A 80 2180 148 HOH WAT . G 4 HOH A 81 2181 149 HOH WAT . G 4 HOH A 82 2182 150 HOH WAT . G 4 HOH A 83 2183 151 HOH WAT . G 4 HOH A 84 2184 152 HOH WAT . G 4 HOH A 85 2185 153 HOH WAT . G 4 HOH A 86 2186 155 HOH WAT . G 4 HOH A 87 2187 156 HOH WAT . G 4 HOH A 88 2188 157 HOH WAT . G 4 HOH A 89 2189 160 HOH WAT . G 4 HOH A 90 2190 162 HOH WAT . G 4 HOH A 91 2191 163 HOH WAT . G 4 HOH A 92 2192 165 HOH WAT . G 4 HOH A 93 2193 172 HOH WAT . G 4 HOH A 94 2194 176 HOH WAT . G 4 HOH A 95 2195 177 HOH WAT . G 4 HOH A 96 2196 178 HOH WAT . G 4 HOH A 97 2197 179 HOH WAT . G 4 HOH A 98 2198 182 HOH WAT . G 4 HOH A 99 2199 184 HOH WAT . G 4 HOH A 100 2200 189 HOH WAT . G 4 HOH A 101 2201 190 HOH WAT . G 4 HOH A 102 2202 192 HOH WAT . G 4 HOH A 103 2203 198 HOH WAT . H 4 HOH X 1 1101 9 HOH WAT . H 4 HOH X 2 1102 10 HOH WAT . H 4 HOH X 3 1103 11 HOH WAT . H 4 HOH X 4 1104 12 HOH WAT . H 4 HOH X 5 1105 14 HOH WAT . H 4 HOH X 6 1106 15 HOH WAT . H 4 HOH X 7 1107 19 HOH WAT . H 4 HOH X 8 1108 21 HOH WAT . H 4 HOH X 9 1109 25 HOH WAT . H 4 HOH X 10 1110 26 HOH WAT . H 4 HOH X 11 1111 27 HOH WAT . H 4 HOH X 12 1112 31 HOH WAT . H 4 HOH X 13 1113 33 HOH WAT . H 4 HOH X 14 1114 35 HOH WAT . H 4 HOH X 15 1115 37 HOH WAT . H 4 HOH X 16 1116 38 HOH WAT . H 4 HOH X 17 1117 40 HOH WAT . H 4 HOH X 18 1118 46 HOH WAT . H 4 HOH X 19 1119 48 HOH WAT . H 4 HOH X 20 1120 51 HOH WAT . H 4 HOH X 21 1121 56 HOH WAT . H 4 HOH X 22 1122 57 HOH WAT . H 4 HOH X 23 1123 59 HOH WAT . H 4 HOH X 24 1124 60 HOH WAT . H 4 HOH X 25 1125 63 HOH WAT . H 4 HOH X 26 1126 66 HOH WAT . H 4 HOH X 27 1127 67 HOH WAT . H 4 HOH X 28 1128 70 HOH WAT . H 4 HOH X 29 1129 71 HOH WAT . H 4 HOH X 30 1130 72 HOH WAT . H 4 HOH X 31 1131 74 HOH WAT . H 4 HOH X 32 1132 75 HOH WAT . H 4 HOH X 33 1133 77 HOH WAT . H 4 HOH X 34 1134 79 HOH WAT . H 4 HOH X 35 1135 80 HOH WAT . H 4 HOH X 36 1136 82 HOH WAT . H 4 HOH X 37 1137 83 HOH WAT . H 4 HOH X 38 1138 85 HOH WAT . H 4 HOH X 39 1139 87 HOH WAT . H 4 HOH X 40 1140 91 HOH WAT . H 4 HOH X 41 1141 92 HOH WAT . H 4 HOH X 42 1142 94 HOH WAT . H 4 HOH X 43 1143 95 HOH WAT . H 4 HOH X 44 1144 97 HOH WAT . H 4 HOH X 45 1145 103 HOH WAT . H 4 HOH X 46 1146 106 HOH WAT . H 4 HOH X 47 1147 107 HOH WAT . H 4 HOH X 48 1148 109 HOH WAT . H 4 HOH X 49 1149 110 HOH WAT . H 4 HOH X 50 1150 115 HOH WAT . H 4 HOH X 51 1151 116 HOH WAT . H 4 HOH X 52 1152 117 HOH WAT . H 4 HOH X 53 1153 118 HOH WAT . H 4 HOH X 54 1154 119 HOH WAT . H 4 HOH X 55 1155 120 HOH WAT . H 4 HOH X 56 1156 122 HOH WAT . H 4 HOH X 57 1157 125 HOH WAT . H 4 HOH X 58 1158 126 HOH WAT . H 4 HOH X 59 1159 128 HOH WAT . H 4 HOH X 60 1160 131 HOH WAT . H 4 HOH X 61 1161 135 HOH WAT . H 4 HOH X 62 1162 136 HOH WAT . H 4 HOH X 63 1163 137 HOH WAT . H 4 HOH X 64 1164 139 HOH WAT . H 4 HOH X 65 1165 141 HOH WAT . H 4 HOH X 66 1166 142 HOH WAT . H 4 HOH X 67 1167 144 HOH WAT . H 4 HOH X 68 1168 147 HOH WAT . H 4 HOH X 69 1169 154 HOH WAT . H 4 HOH X 70 1170 158 HOH WAT . H 4 HOH X 71 1171 159 HOH WAT . H 4 HOH X 72 1172 161 HOH WAT . H 4 HOH X 73 1173 164 HOH WAT . H 4 HOH X 74 1174 166 HOH WAT . H 4 HOH X 75 1175 167 HOH WAT . H 4 HOH X 76 1176 168 HOH WAT . H 4 HOH X 77 1177 169 HOH WAT . H 4 HOH X 78 1178 170 HOH WAT . H 4 HOH X 79 1179 171 HOH WAT . H 4 HOH X 80 1180 173 HOH WAT . H 4 HOH X 81 1181 174 HOH WAT . H 4 HOH X 82 1182 175 HOH WAT . H 4 HOH X 83 1183 180 HOH WAT . H 4 HOH X 84 1184 181 HOH WAT . H 4 HOH X 85 1185 183 HOH WAT . H 4 HOH X 86 1186 185 HOH WAT . H 4 HOH X 87 1187 186 HOH WAT . H 4 HOH X 88 1188 187 HOH WAT . H 4 HOH X 89 1189 188 HOH WAT . H 4 HOH X 90 1190 191 HOH WAT . H 4 HOH X 91 1191 193 HOH WAT . H 4 HOH X 92 1192 194 HOH WAT . H 4 HOH X 93 1193 195 HOH WAT . H 4 HOH X 94 1194 196 HOH WAT . H 4 HOH X 95 1195 197 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 24.328 -26.287 -35.712 1 112.86 ? C1 NAG 2000 A 1 HETATM 2 C C2 NAG . . . C 3 25.044 -27.226 -36.663 1 112.86 ? C2 NAG 2000 A 1 HETATM 3 C C3 NAG . . . C 3 26.152 -27.964 -35.94 1 112.86 ? C3 NAG 2000 A 1 HETATM 4 C C4 NAG . . . C 3 26.962 -27.087 -34.97 1 112.86 ? C4 NAG 2000 A 1 HETATM 5 C C5 NAG . . . C 3 26.076 -26.094 -34.197 1 112.86 ? C5 NAG 2000 A 1 HETATM 6 C C6 NAG . . . C 3 26.806 -25.074 -33.352 1 112.86 ? C6 NAG 2000 A 1 HETATM 7 C C7 NAG . . . C 3 24.504 -29.2 -37.928 1 112.86 ? C7 NAG 2000 A 1 HETATM 8 C C8 NAG . . . C 3 24.842 -30.544 -37.267 1 112.86 ? C8 NAG 2000 A 1 HETATM 9 N N2 NAG . . . C 3 24.095 -28.204 -37.151 1 112.86 ? N2 NAG 2000 A 1 HETATM 10 O O3 NAG . . . C 3 27.021 -28.525 -36.907 1 112.86 ? O3 NAG 2000 A 1 HETATM 11 O O4 NAG . . . C 3 27.59 -27.952 -34.035 1 112.86 ? O4 NAG 2000 A 1 HETATM 12 O O5 NAG . . . C 3 25.238 -25.386 -35.108 1 112.86 ? O5 NAG 2000 A 1 HETATM 13 O O6 NAG . . . C 3 27.845 -24.455 -34.081 1 112.86 ? O6 NAG 2000 A 1 HETATM 14 O O7 NAG . . . C 3 24.617 -29.068 -39.145 1 112.86 ? O7 NAG 2000 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #