data_4EXZ
#
_model_server_result.job_id            1dU1mym9chBQqAMZbBWVJQ 
_model_server_result.datetime_utc      '2024-11-15 05:31:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4exz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    4EXZ 
#
_exptl.entry_id    4EXZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.83 
_cell.angle_beta          92.88 
_cell.angle_gamma         113.19 
_cell.entry_id            4EXZ 
_cell.length_a            29.814 
_cell.length_b            35.944 
_cell.length_c            63.975 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EXZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 108 A LYS 108 1_555 D C15 RET . A RET 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.258 ? 
covale ? covale2 B NZ LYS 108 B LYS 108 1_555 F C15 RET . B RET 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.258 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 266 n n 
C1 C6 RET sing 267 n n 
C1 C16 RET sing 268 n n 
C1 C17 RET sing 269 n n 
C2 C3 RET sing 270 n n 
C2 H21 RET sing 271 n n 
C2 H22 RET sing 272 n n 
C3 C4 RET sing 273 n n 
C3 H31 RET sing 274 n n 
C3 H32 RET sing 275 n n 
C4 C5 RET sing 276 n n 
C4 H41 RET sing 277 n n 
C4 H42 RET sing 278 n n 
C5 C6 RET doub 279 n n 
C5 C18 RET sing 280 n n 
C6 C7 RET sing 281 n n 
C7 C8 RET doub 282 e n 
C7 H7 RET sing 283 n n 
C8 C9 RET sing 284 n n 
C8 H8 RET sing 285 n n 
C9 C10 RET doub 286 e n 
C9 C19 RET sing 287 n n 
C10 C11 RET sing 288 n n 
C10 H10 RET sing 289 n n 
C11 C12 RET doub 290 e n 
C11 H11 RET sing 291 n n 
C12 C13 RET sing 292 n n 
C12 H12 RET sing 293 n n 
C13 C14 RET doub 294 e n 
C13 C20 RET sing 295 n n 
C14 C15 RET sing 296 n n 
C14 H14 RET sing 297 n n 
C15 O1 RET doub 298 n n 
C15 H15 RET sing 299 n n 
C16 H161 RET sing 300 n n 
C16 H162 RET sing 301 n n 
C16 H163 RET sing 302 n n 
C17 H171 RET sing 303 n n 
C17 H172 RET sing 304 n n 
C17 H173 RET sing 305 n n 
C18 H181 RET sing 306 n n 
C18 H182 RET sing 307 n n 
C18 H183 RET sing 308 n n 
C19 H191 RET sing 309 n n 
C19 H192 RET sing 310 n n 
C19 H193 RET sing 311 n n 
C20 H201 RET sing 312 n n 
C20 H202 RET sing 313 n n 
C20 H203 RET sing 314 n n 
#
_atom_sites.entry_id                     4EXZ 
_atom_sites.fract_transf_matrix[1][1]    0.033541 
_atom_sites.fract_transf_matrix[1][2]    0.014369 
_atom_sites.fract_transf_matrix[1][3]    0.002225 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030266 
_atom_sites.fract_transf_matrix[2][3]    0.001131 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015662 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACT A 1 201 1 ACT ACT . 
D 3 RET A 1 202 1 RET RET . 
E 2 ACT B 1 201 1 ACT ACT . 
F 3 RET B 1 202 1 RET RET . 
G 4 HOH A 1 301 1 HOH HOH . 
G 4 HOH A 2 302 2 HOH HOH . 
G 4 HOH A 3 303 10 HOH HOH . 
G 4 HOH A 4 304 11 HOH HOH . 
G 4 HOH A 5 305 14 HOH HOH . 
G 4 HOH A 6 306 15 HOH HOH . 
G 4 HOH A 7 307 18 HOH HOH . 
G 4 HOH A 8 308 22 HOH HOH . 
G 4 HOH A 9 309 23 HOH HOH . 
G 4 HOH A 10 310 25 HOH HOH . 
G 4 HOH A 11 311 27 HOH HOH . 
G 4 HOH A 12 312 32 HOH HOH . 
G 4 HOH A 13 313 33 HOH HOH . 
G 4 HOH A 14 314 34 HOH HOH . 
G 4 HOH A 15 315 36 HOH HOH . 
G 4 HOH A 16 316 38 HOH HOH . 
G 4 HOH A 17 317 39 HOH HOH . 
G 4 HOH A 18 318 40 HOH HOH . 
G 4 HOH A 19 319 41 HOH HOH . 
G 4 HOH A 20 320 42 HOH HOH . 
G 4 HOH A 21 321 46 HOH HOH . 
G 4 HOH A 22 322 1 HOH HOH . 
G 4 HOH A 23 323 2 HOH HOH . 
G 4 HOH A 24 324 4 HOH HOH . 
G 4 HOH A 25 325 5 HOH HOH . 
G 4 HOH A 26 326 7 HOH HOH . 
G 4 HOH A 27 327 10 HOH HOH . 
G 4 HOH A 28 328 12 HOH HOH . 
G 4 HOH A 29 329 13 HOH HOH . 
G 4 HOH A 30 330 14 HOH HOH . 
G 4 HOH A 31 331 15 HOH HOH . 
G 4 HOH A 32 332 16 HOH HOH . 
G 4 HOH A 33 333 23 HOH HOH . 
G 4 HOH A 34 334 26 HOH HOH . 
G 4 HOH A 35 335 29 HOH HOH . 
G 4 HOH A 36 336 30 HOH HOH . 
G 4 HOH A 37 337 33 HOH HOH . 
G 4 HOH A 38 338 35 HOH HOH . 
G 4 HOH A 39 339 36 HOH HOH . 
G 4 HOH A 40 340 37 HOH HOH . 
G 4 HOH A 41 341 40 HOH HOH . 
G 4 HOH A 42 342 41 HOH HOH . 
G 4 HOH A 43 343 42 HOH HOH . 
G 4 HOH A 44 344 48 HOH HOH . 
G 4 HOH A 45 345 51 HOH HOH . 
G 4 HOH A 46 346 52 HOH HOH . 
G 4 HOH A 47 347 53 HOH HOH . 
G 4 HOH A 48 348 54 HOH HOH . 
G 4 HOH A 49 349 57 HOH HOH . 
G 4 HOH A 50 350 60 HOH HOH . 
G 4 HOH A 51 351 61 HOH HOH . 
G 4 HOH A 52 352 62 HOH HOH . 
G 4 HOH A 53 353 64 HOH HOH . 
G 4 HOH A 54 354 66 HOH HOH . 
G 4 HOH A 55 355 67 HOH HOH . 
G 4 HOH A 56 356 68 HOH HOH . 
G 4 HOH A 57 357 2 HOH HOH . 
G 4 HOH A 58 358 3 HOH HOH . 
G 4 HOH A 59 359 4 HOH HOH . 
G 4 HOH A 60 360 9 HOH HOH . 
G 4 HOH A 61 361 11 HOH HOH . 
G 4 HOH A 62 362 12 HOH HOH . 
G 4 HOH A 63 363 17 HOH HOH . 
G 4 HOH A 64 364 19 HOH HOH . 
G 4 HOH A 65 365 26 HOH HOH . 
G 4 HOH A 66 366 30 HOH HOH . 
G 4 HOH A 67 367 35 HOH HOH . 
G 4 HOH A 68 368 37 HOH HOH . 
G 4 HOH A 69 369 38 HOH HOH . 
G 4 HOH A 70 370 40 HOH HOH . 
G 4 HOH A 71 371 42 HOH HOH . 
G 4 HOH A 72 372 43 HOH HOH . 
G 4 HOH A 73 373 46 HOH HOH . 
G 4 HOH A 74 374 47 HOH HOH . 
H 4 HOH B 1 301 45 HOH HOH . 
H 4 HOH B 2 302 3 HOH HOH . 
H 4 HOH B 3 303 4 HOH HOH . 
H 4 HOH B 4 304 5 HOH HOH . 
H 4 HOH B 5 305 6 HOH HOH . 
H 4 HOH B 6 306 7 HOH HOH . 
H 4 HOH B 7 307 8 HOH HOH . 
H 4 HOH B 8 308 9 HOH HOH . 
H 4 HOH B 9 309 12 HOH HOH . 
H 4 HOH B 10 310 13 HOH HOH . 
H 4 HOH B 11 311 16 HOH HOH . 
H 4 HOH B 12 312 17 HOH HOH . 
H 4 HOH B 13 313 19 HOH HOH . 
H 4 HOH B 14 314 20 HOH HOH . 
H 4 HOH B 15 315 21 HOH HOH . 
H 4 HOH B 16 316 24 HOH HOH . 
H 4 HOH B 17 317 26 HOH HOH . 
H 4 HOH B 18 318 28 HOH HOH . 
H 4 HOH B 19 319 29 HOH HOH . 
H 4 HOH B 20 320 30 HOH HOH . 
H 4 HOH B 21 321 31 HOH HOH . 
H 4 HOH B 22 322 35 HOH HOH . 
H 4 HOH B 23 323 37 HOH HOH . 
H 4 HOH B 24 324 43 HOH HOH . 
H 4 HOH B 25 325 44 HOH HOH . 
H 4 HOH B 26 326 47 HOH HOH . 
H 4 HOH B 27 327 3 HOH HOH . 
H 4 HOH B 28 328 6 HOH HOH . 
H 4 HOH B 29 329 8 HOH HOH . 
H 4 HOH B 30 330 9 HOH HOH . 
H 4 HOH B 31 331 11 HOH HOH . 
H 4 HOH B 32 332 17 HOH HOH . 
H 4 HOH B 33 333 18 HOH HOH . 
H 4 HOH B 34 334 19 HOH HOH . 
H 4 HOH B 35 335 20 HOH HOH . 
H 4 HOH B 36 336 21 HOH HOH . 
H 4 HOH B 37 337 22 HOH HOH . 
H 4 HOH B 38 338 24 HOH HOH . 
H 4 HOH B 39 339 25 HOH HOH . 
H 4 HOH B 40 340 27 HOH HOH . 
H 4 HOH B 41 341 28 HOH HOH . 
H 4 HOH B 42 342 31 HOH HOH . 
H 4 HOH B 43 343 32 HOH HOH . 
H 4 HOH B 44 344 34 HOH HOH . 
H 4 HOH B 45 345 38 HOH HOH . 
H 4 HOH B 46 346 39 HOH HOH . 
H 4 HOH B 47 347 43 HOH HOH . 
H 4 HOH B 48 348 44 HOH HOH . 
H 4 HOH B 49 349 45 HOH HOH . 
H 4 HOH B 50 350 46 HOH HOH . 
H 4 HOH B 51 351 47 HOH HOH . 
H 4 HOH B 52 352 49 HOH HOH . 
H 4 HOH B 53 353 50 HOH HOH . 
H 4 HOH B 54 354 55 HOH HOH . 
H 4 HOH B 55 355 56 HOH HOH . 
H 4 HOH B 56 356 58 HOH HOH . 
H 4 HOH B 57 357 59 HOH HOH . 
H 4 HOH B 58 358 63 HOH HOH . 
H 4 HOH B 59 359 65 HOH HOH . 
H 4 HOH B 60 360 1 HOH HOH . 
H 4 HOH B 61 361 5 HOH HOH . 
H 4 HOH B 62 362 6 HOH HOH . 
H 4 HOH B 63 363 7 HOH HOH . 
H 4 HOH B 64 364 8 HOH HOH . 
H 4 HOH B 65 365 10 HOH HOH . 
H 4 HOH B 66 366 13 HOH HOH . 
H 4 HOH B 67 367 14 HOH HOH . 
H 4 HOH B 68 368 15 HOH HOH . 
H 4 HOH B 69 369 16 HOH HOH . 
H 4 HOH B 70 370 18 HOH HOH . 
H 4 HOH B 71 371 20 HOH HOH . 
H 4 HOH B 72 372 21 HOH HOH . 
H 4 HOH B 73 373 22 HOH HOH . 
H 4 HOH B 74 374 23 HOH HOH . 
H 4 HOH B 75 375 24 HOH HOH . 
H 4 HOH B 76 376 25 HOH HOH . 
H 4 HOH B 77 377 27 HOH HOH . 
H 4 HOH B 78 378 28 HOH HOH . 
H 4 HOH B 79 379 29 HOH HOH . 
H 4 HOH B 80 380 31 HOH HOH . 
H 4 HOH B 81 381 32 HOH HOH . 
H 4 HOH B 82 382 33 HOH HOH . 
H 4 HOH B 83 383 34 HOH HOH . 
H 4 HOH B 84 384 36 HOH HOH . 
H 4 HOH B 85 385 39 HOH HOH . 
H 4 HOH B 86 386 41 HOH HOH . 
H 4 HOH B 87 387 44 HOH HOH . 
H 4 HOH B 88 388 45 HOH HOH . 
H 4 HOH B 89 389 48 HOH HOH . 
H 4 HOH B 90 390 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 RET . . . F 3 4.591 -3.598 30.224 1 56.19 ? C12 RET 202 B 1 
HETATM 2 C C13 RET . . . F 3 4.176 -4.481 31.336 1 54.38 ? C13 RET 202 B 1 
HETATM 3 C C14 RET . . . F 3 2.917 -4.913 31.416 1 53.59 ? C14 RET 202 B 1 
HETATM 4 C C15 RET . . . F 3 2.558 -5.793 32.518 1 52.75 ? C15 RET 202 B 1 
HETATM 5 C C20 RET . . . F 3 5.159 -4.927 32.38 1 55.05 ? C20 RET 202 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#