data_4EY8 # _model_server_result.job_id G32cqD4huHBGEDxC7CeFsw _model_server_result.datetime_utc '2024-11-07 13:06:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ey8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 4EY8 # _exptl.entry_id 4EY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4EY8 _cell.length_a 151.705 _cell.length_b 151.705 _cell.length_c 247.862 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG D 2 NAG 3 n C NAG 2 C 2 NAG D 3 NAG 3 n C BMA 3 C 3 BMA D 4 BMA 3 n C FUC 4 C 4 FUC D 1 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 68 A CYS 69 1_555 A SG CYS 95 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 A SG CYS 256 A CYS 257 1_555 A SG CYS 271 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 A SG CYS 408 A CYS 409 1_555 A SG CYS 528 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf4 B SG CYS 3 B CYS 3 1_555 B SG CYS 22 B CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 17 B CYS 17 1_555 B SG CYS 39 B CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 B SG CYS 41 B CYS 41 1_555 B SG CYS 52 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 B SG CYS 53 B CYS 53 1_555 B SG CYS 59 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 349 A ASN 350 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? covale ? covale2 A ND2 ASN 463 A ASN 464 1_555 H C1 NAG . A NAG 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.554 ? covale ? covale4 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.213 ? covale ? covale5 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.547 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 367 n n S O2 SO4 doub 368 n n S O3 SO4 sing 369 n n S O4 SO4 sing 370 n n # _atom_sites.entry_id 4EY8 _atom_sites.fract_transf_matrix[1][1] 0.006592 _atom_sites.fract_transf_matrix[1][2] 0.003806 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 A 1 601 1 SO4 SO4 . E 4 SO4 A 1 602 2 SO4 SO4 . F 4 SO4 A 1 603 3 SO4 SO4 . G 4 SO4 A 1 604 4 SO4 SO4 . H 5 NAG A 1 609 5 NAG NAG . I 6 HOH A 1 701 1 HOH HOH . I 6 HOH A 2 702 2 HOH HOH . I 6 HOH A 3 703 3 HOH HOH . I 6 HOH A 4 704 4 HOH HOH . I 6 HOH A 5 705 5 HOH HOH . I 6 HOH A 6 706 6 HOH HOH . I 6 HOH A 7 707 7 HOH HOH . I 6 HOH A 8 708 8 HOH HOH . I 6 HOH A 9 709 9 HOH HOH . I 6 HOH A 10 710 10 HOH HOH . I 6 HOH A 11 711 11 HOH HOH . I 6 HOH A 12 712 12 HOH HOH . I 6 HOH A 13 713 13 HOH HOH . I 6 HOH A 14 714 14 HOH HOH . I 6 HOH A 15 715 15 HOH HOH . I 6 HOH A 16 716 16 HOH HOH . I 6 HOH A 17 717 17 HOH HOH . I 6 HOH A 18 718 19 HOH HOH . I 6 HOH A 19 719 20 HOH HOH . I 6 HOH A 20 720 21 HOH HOH . I 6 HOH A 21 721 23 HOH HOH . I 6 HOH A 22 722 24 HOH HOH . I 6 HOH A 23 723 25 HOH HOH . I 6 HOH A 24 724 26 HOH HOH . I 6 HOH A 25 725 27 HOH HOH . I 6 HOH A 26 726 28 HOH HOH . I 6 HOH A 27 727 29 HOH HOH . I 6 HOH A 28 728 30 HOH HOH . I 6 HOH A 29 729 31 HOH HOH . I 6 HOH A 30 730 32 HOH HOH . I 6 HOH A 31 731 33 HOH HOH . I 6 HOH A 32 732 34 HOH HOH . I 6 HOH A 33 733 35 HOH HOH . I 6 HOH A 34 734 36 HOH HOH . I 6 HOH A 35 735 37 HOH HOH . I 6 HOH A 36 736 38 HOH HOH . I 6 HOH A 37 737 39 HOH HOH . I 6 HOH A 38 738 40 HOH HOH . I 6 HOH A 39 739 41 HOH HOH . I 6 HOH A 40 740 42 HOH HOH . I 6 HOH A 41 741 43 HOH HOH . I 6 HOH A 42 742 44 HOH HOH . J 6 HOH B 1 101 18 HOH HOH . J 6 HOH B 2 102 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 4 -47.96 -4.11 46.784 0.69 65.03 ? S SO4 601 A 1 HETATM 2 O O1 SO4 . . . D 4 -46.602 -3.65 47.087 0.69 56.63 ? O1 SO4 601 A 1 HETATM 3 O O2 SO4 . . . D 4 -48.25 -3.961 45.345 0.69 69.87 ? O2 SO4 601 A 1 HETATM 4 O O3 SO4 . . . D 4 -48.077 -5.522 47.116 0.69 55.24 ? O3 SO4 601 A 1 HETATM 5 O O4 SO4 . . . D 4 -48.918 -3.348 47.578 0.69 50.37 ? O4 SO4 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #