data_4EYI
#
_model_server_result.job_id            XFM5fYR2ogfS1VWv-IHuLA 
_model_server_result.datetime_utc      '2024-11-16 04:24:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4eyi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    4EYI 
#
_exptl.entry_id    4EYI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              491.182 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4EYI 
_cell.length_a            98.85 
_cell.length_b            98.85 
_cell.length_c            194.203 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EYI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 34 B ASP 34 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc2 A O LEU 35 B LEU 35 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? 
metalc ? metalc3 A OD1 ASP 126 B ASP 126 1_555 E MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
metalc ? metalc4 A OD1 ASP 126 B ASP 126 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc5 A OE2 GLU 127 B GLU 127 1_555 E MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? 
metalc ? metalc6 A O LYS 237 B LYS 237 1_555 G MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc7 A O ILE 242 B ILE 242 1_555 G MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? 
metalc ? metalc8 D O1A DTP . B DTP 501 1_555 E MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc9 D O1G DTP . B DTP 501 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc10 D O1B DTP . B DTP 501 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc11 D O3A DTP . B DTP 501 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? 
metalc ? metalc12 G MG MG . B MG 504 1_555 H O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc13 G MG MG . B MG 504 1_555 C OP1 DC 6 P DC 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? 
hydrog 'DG-DC PAIR' hydrog1 B O6 DG 2 T DG 841 1_555 C N4 DC 7 P DC 873 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N1 DG 3 T DG 842 1_555 C N3 DC 6 P DC 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B N2 DG 3 T DG 842 1_555 C O2 DC 6 P DC 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B O6 DG 3 T DG 842 1_555 C N4 DC 6 P DC 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B N1 DG 4 T DG 843 1_555 C N3 DC 5 P DC 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B N2 DG 4 T DG 843 1_555 C O2 DC 5 P DC 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B O6 DG 4 T DG 843 1_555 C N4 DC 5 P DC 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N3 DT 5 T DT 844 1_555 C N1 DA 4 P DA 870 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B O4 DT 5 T DT 844 1_555 C N6 DA 4 P DA 870 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N3 DC 6 T DC 845 1_555 C N1 DG 3 P DG 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B N4 DC 6 T DC 845 1_555 C O6 DG 3 P DG 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B O2 DC 6 T DC 845 1_555 C N2 DG 3 P DG 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B N3 DC 7 T DC 846 1_555 C N1 DG 2 P DG 868 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B N4 DC 7 T DC 846 1_555 C O6 DG 2 P DG 868 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B O2 DC 7 T DC 846 1_555 C N2 DG 2 P DG 868 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 B N3 DT 8 T DT 847 1_555 C N1 DA 1 P DA 867 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 B O4 DT 8 T DT 847 1_555 C N6 DA 1 P DA 867 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3' 
_chem_comp.formula_weight    491.182 
_chem_comp.id                DTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G DTP doub 301 n n 
PG O2G DTP sing 302 n n 
PG O3G DTP sing 303 n n 
PG O3B DTP sing 304 n n 
O2G HOG2 DTP sing 305 n n 
O3G HOG3 DTP sing 306 n n 
PB O1B DTP doub 307 n n 
PB O2B DTP sing 308 n n 
PB O3B DTP sing 309 n n 
PB O3A DTP sing 310 n n 
O2B HOB2 DTP sing 311 n n 
PA O1A DTP doub 312 n n 
PA O2A DTP sing 313 n n 
PA O3A DTP sing 314 n n 
PA O5' DTP sing 315 n n 
O2A HOA2 DTP sing 316 n n 
O5' C5' DTP sing 317 n n 
C5' C4' DTP sing 318 n n 
C5' "H5'1" DTP sing 319 n n 
C5' "H5'2" DTP sing 320 n n 
C4' O4' DTP sing 321 n n 
C4' C3' DTP sing 322 n n 
C4' H4' DTP sing 323 n n 
O4' C1' DTP sing 324 n n 
C3' O3' DTP sing 325 n n 
C3' C2' DTP sing 326 n n 
C3' H3' DTP sing 327 n n 
O3' HO3' DTP sing 328 n n 
C2' C1' DTP sing 329 n n 
C2' "H2'1" DTP sing 330 n n 
C2' "H2'2" DTP sing 331 n n 
C1' N9 DTP sing 332 n n 
C1' H1' DTP sing 333 n n 
N9 C8 DTP sing 334 n y 
N9 C4 DTP sing 335 n y 
C8 N7 DTP doub 336 n y 
C8 H8 DTP sing 337 n n 
N7 C5 DTP sing 338 n y 
C5 C6 DTP sing 339 n y 
C5 C4 DTP doub 340 n y 
C6 N6 DTP sing 341 n n 
C6 N1 DTP doub 342 n y 
N6 HN61 DTP sing 343 n n 
N6 HN62 DTP sing 344 n n 
N1 C2 DTP sing 345 n y 
C2 N3 DTP doub 346 n y 
C2 H2 DTP sing 347 n n 
N3 C4 DTP sing 348 n y 
#
_atom_sites.entry_id                     4EYI 
_atom_sites.fract_transf_matrix[1][1]    0.010116 
_atom_sites.fract_transf_matrix[1][2]    0.005841 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011681 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 DTP B 1 501 1 DTP ATP . 
E 5 MG B 1 502 2 MG MG . 
F 5 MG B 1 503 1 MG MG . 
G 5 MG B 1 504 1 MG MG . 
H 6 HOH B 1 601 1 HOH HOH . 
H 6 HOH B 2 602 2 HOH HOH . 
H 6 HOH B 3 603 5 HOH HOH . 
H 6 HOH B 4 604 6 HOH HOH . 
H 6 HOH B 5 605 10 HOH HOH . 
H 6 HOH B 6 606 14 HOH HOH . 
H 6 HOH B 7 607 16 HOH HOH . 
H 6 HOH B 8 608 17 HOH HOH . 
H 6 HOH B 9 609 18 HOH HOH . 
H 6 HOH B 10 610 19 HOH HOH . 
H 6 HOH B 11 611 20 HOH HOH . 
H 6 HOH B 12 612 21 HOH HOH . 
H 6 HOH B 13 613 22 HOH HOH . 
H 6 HOH B 14 614 23 HOH HOH . 
H 6 HOH B 15 615 24 HOH HOH . 
H 6 HOH B 16 616 25 HOH HOH . 
H 6 HOH B 17 617 26 HOH HOH . 
H 6 HOH B 18 618 27 HOH HOH . 
H 6 HOH B 19 619 28 HOH HOH . 
H 6 HOH B 20 620 29 HOH HOH . 
H 6 HOH B 21 621 31 HOH HOH . 
H 6 HOH B 22 622 32 HOH HOH . 
H 6 HOH B 23 623 33 HOH HOH . 
H 6 HOH B 24 624 34 HOH HOH . 
I 6 HOH P 1 901 4 HOH HOH . 
I 6 HOH P 2 902 11 HOH HOH . 
I 6 HOH P 3 903 12 HOH HOH . 
I 6 HOH P 4 904 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG DTP . . . D 4 1.099 18.544 13.614 1 95.53 ? PG DTP 501 B 1 
HETATM 2 O O1G DTP . . . D 4 2.061 19.471 12.905 1 95.1 ? O1G DTP 501 B 1 
HETATM 3 O O2G DTP . . . D 4 1.528 17.093 13.552 1 96.41 ? O2G DTP 501 B 1 
HETATM 4 O O3G DTP . . . D 4 -0.352 18.819 13.272 1 94.63 ? O3G DTP 501 B 1 
HETATM 5 P PB DTP . . . D 4 1.247 20.375 15.809 1 118.83 ? PB DTP 501 B 1 
HETATM 6 O O1B DTP . . . D 4 2.631 20.521 16.411 1 117 ? O1B DTP 501 B 1 
HETATM 7 O O2B DTP . . . D 4 0.03 20.562 16.691 1 119.5 ? O2B DTP 501 B 1 
HETATM 8 O O3B DTP . . . D 4 1.201 18.885 15.188 1 92.42 ? O3B DTP 501 B 1 
HETATM 9 P PA DTP . . . D 4 0.933 22.975 14.658 1 120.67 ? PA DTP 501 B 1 
HETATM 10 O O1A DTP . . . D 4 1.977 23.623 13.796 1 120.4 ? O1A DTP 501 B 1 
HETATM 11 O O2A DTP . . . D 4 -0.509 23.346 14.393 1 121.86 ? O2A DTP 501 B 1 
HETATM 12 O O3A DTP . . . D 4 1.097 21.364 14.527 1 141.45 ? O3A DTP 501 B 1 
HETATM 13 O O5' DTP . . . D 4 1.294 23.227 16.215 1 102.8 ? O5' DTP 501 B 1 
HETATM 14 C C5' DTP . . . D 4 2.624 23.413 16.711 1 102.98 ? C5' DTP 501 B 1 
HETATM 15 C C4' DTP . . . D 4 2.609 23.517 18.245 1 102.77 ? C4' DTP 501 B 1 
HETATM 16 O O4' DTP . . . D 4 1.96 24.733 18.63 1 102.96 ? O4' DTP 501 B 1 
HETATM 17 C C3' DTP . . . D 4 1.854 22.372 18.929 1 102.05 ? C3' DTP 501 B 1 
HETATM 18 O O3' DTP . . . D 4 2.712 21.535 19.716 1 99.25 ? O3' DTP 501 B 1 
HETATM 19 C C2' DTP . . . D 4 0.811 23.01 19.831 1 102.58 ? C2' DTP 501 B 1 
HETATM 20 C C1' DTP . . . D 4 0.908 24.507 19.573 1 103.1 ? C1' DTP 501 B 1 
HETATM 21 N N9 DTP . . . D 4 -0.355 25.017 18.979 1 104.18 ? N9 DTP 501 B 1 
HETATM 22 C C8 DTP . . . D 4 -0.705 24.907 17.68 1 103.99 ? C8 DTP 501 B 1 
HETATM 23 N N7 DTP . . . D 4 -1.917 25.479 17.442 1 103.69 ? N7 DTP 501 B 1 
HETATM 24 C C5 DTP . . . D 4 -2.361 25.975 18.613 1 103.58 ? C5 DTP 501 B 1 
HETATM 25 C C6 DTP . . . D 4 -3.571 26.708 19.066 1 101.7 ? C6 DTP 501 B 1 
HETATM 26 N N6 DTP . . . D 4 -4.565 27.028 18.199 1 99.23 ? N6 DTP 501 B 1 
HETATM 27 N N1 DTP . . . D 4 -3.643 27.043 20.38 1 102.89 ? N1 DTP 501 B 1 
HETATM 28 C C2 DTP . . . D 4 -2.661 26.722 21.255 1 104.09 ? C2 DTP 501 B 1 
HETATM 29 N N3 DTP . . . D 4 -1.534 26.064 20.912 1 105.11 ? N3 DTP 501 B 1 
HETATM 30 C C4 DTP . . . D 4 -1.329 25.669 19.627 1 104.96 ? C4 DTP 501 B 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           30 
#