data_4EYI # _model_server_result.job_id llMTpZafWdBDTeNwPgKB-g _model_server_result.datetime_utc '2024-11-16 04:51:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 4EYI # _exptl.entry_id 4EYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4EYI _cell.length_a 98.85 _cell.length_b 98.85 _cell.length_c 194.203 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 34 B ASP 34 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc2 A O LEU 35 B LEU 35 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc3 A OD1 ASP 126 B ASP 126 1_555 E MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc4 A OD1 ASP 126 B ASP 126 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc5 A OE2 GLU 127 B GLU 127 1_555 E MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc6 A O LYS 237 B LYS 237 1_555 G MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc7 A O ILE 242 B ILE 242 1_555 G MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc8 D O1A DTP . B DTP 501 1_555 E MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc9 D O1G DTP . B DTP 501 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc10 D O1B DTP . B DTP 501 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc11 D O3A DTP . B DTP 501 1_555 F MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc12 G MG MG . B MG 504 1_555 H O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc13 G MG MG . B MG 504 1_555 C OP1 DC 6 P DC 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? hydrog 'DG-DC PAIR' hydrog1 B O6 DG 2 T DG 841 1_555 C N4 DC 7 P DC 873 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N1 DG 3 T DG 842 1_555 C N3 DC 6 P DC 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N2 DG 3 T DG 842 1_555 C O2 DC 6 P DC 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B O6 DG 3 T DG 842 1_555 C N4 DC 6 P DC 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N1 DG 4 T DG 843 1_555 C N3 DC 5 P DC 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N2 DG 4 T DG 843 1_555 C O2 DC 5 P DC 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O6 DG 4 T DG 843 1_555 C N4 DC 5 P DC 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 DT 5 T DT 844 1_555 C N1 DA 4 P DA 870 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 DT 5 T DT 844 1_555 C N6 DA 4 P DA 870 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DC 6 T DC 845 1_555 C N1 DG 3 P DG 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N4 DC 6 T DC 845 1_555 C O6 DG 3 P DG 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O2 DC 6 T DC 845 1_555 C N2 DG 3 P DG 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 DC 7 T DC 846 1_555 C N1 DG 2 P DG 868 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N4 DC 7 T DC 846 1_555 C O6 DG 2 P DG 868 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O2 DC 7 T DC 846 1_555 C N2 DG 2 P DG 868 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DT 8 T DT 847 1_555 C N1 DA 1 P DA 867 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O4 DT 8 T DT 847 1_555 C N6 DA 1 P DA 867 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4EYI _atom_sites.fract_transf_matrix[1][1] 0.010116 _atom_sites.fract_transf_matrix[1][2] 0.005841 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DTP B 1 501 1 DTP ATP . E 5 MG B 1 502 2 MG MG . F 5 MG B 1 503 1 MG MG . G 5 MG B 1 504 1 MG MG . H 6 HOH B 1 601 1 HOH HOH . H 6 HOH B 2 602 2 HOH HOH . H 6 HOH B 3 603 5 HOH HOH . H 6 HOH B 4 604 6 HOH HOH . H 6 HOH B 5 605 10 HOH HOH . H 6 HOH B 6 606 14 HOH HOH . H 6 HOH B 7 607 16 HOH HOH . H 6 HOH B 8 608 17 HOH HOH . H 6 HOH B 9 609 18 HOH HOH . H 6 HOH B 10 610 19 HOH HOH . H 6 HOH B 11 611 20 HOH HOH . H 6 HOH B 12 612 21 HOH HOH . H 6 HOH B 13 613 22 HOH HOH . H 6 HOH B 14 614 23 HOH HOH . H 6 HOH B 15 615 24 HOH HOH . H 6 HOH B 16 616 25 HOH HOH . H 6 HOH B 17 617 26 HOH HOH . H 6 HOH B 18 618 27 HOH HOH . H 6 HOH B 19 619 28 HOH HOH . H 6 HOH B 20 620 29 HOH HOH . H 6 HOH B 21 621 31 HOH HOH . H 6 HOH B 22 622 32 HOH HOH . H 6 HOH B 23 623 33 HOH HOH . H 6 HOH B 24 624 34 HOH HOH . I 6 HOH P 1 901 4 HOH HOH . I 6 HOH P 2 902 11 HOH HOH . I 6 HOH P 3 903 12 HOH HOH . I 6 HOH P 4 904 13 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 3.875 _atom_site.Cartn_y 20.624 _atom_site.Cartn_z 13.993 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 92.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 503 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 953 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #