data_4EYU # _model_server_result.job_id eB5FAdK4zQG19VvLAW38lA _model_server_result.datetime_utc '2024-11-04 23:49:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1701}' # _entry.id 4EYU # _exptl.entry_id 4EYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EYU _cell.length_a 82.977 _cell.length_b 102.284 _cell.length_c 145.302 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 233 A HIS 1390 1_555 D NI NI . A NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc2 A OE2 GLU 235 A GLU 1392 1_555 D NI NI . A NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc3 A NE2 HIS 313 A HIS 1470 1_555 D NI NI . A NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 A SG CYS 418 A CYS 1575 1_555 E ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc5 A SG CYS 421 A CYS 1578 1_555 E ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc6 A SG CYS 445 A CYS 1602 1_555 E ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc7 A SG CYS 448 A CYS 1605 1_555 E ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc8 C O2 OGA . A OGA 1700 1_555 D NI NI . A NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc9 C O2' OGA . A OGA 1700 1_555 D NI NI . A NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc10 D NI NI . A NI 1701 1_555 I O HOH . A HOH 1827 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc11 B NE2 HIS 233 B HIS 1390 1_555 G NI NI . B NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc12 B OE2 GLU 235 B GLU 1392 1_555 G NI NI . B NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc13 B NE2 HIS 313 B HIS 1470 1_555 G NI NI . B NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc14 B SG CYS 418 B CYS 1575 1_555 H ZN ZN . B ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc15 B SG CYS 421 B CYS 1578 1_555 H ZN ZN . B ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc16 B SG CYS 445 B CYS 1602 1_555 H ZN ZN . B ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc17 B SG CYS 448 B CYS 1605 1_555 H ZN ZN . B ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc18 F O2 OGA . B OGA 1700 1_555 G NI NI . B NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc19 F O2' OGA . B OGA 1700 1_555 G NI NI . B NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc20 G NI NI . B NI 1701 1_555 J O HOH . B HOH 1832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4EYU _atom_sites.fract_transf_matrix[1][1] 0.012052 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OGA A 1 1700 1700 OGA OGA . D 3 NI A 1 1701 1701 NI NI . E 4 ZN A 1 1702 1702 ZN ZN . F 2 OGA B 1 1700 1700 OGA OGA . G 3 NI B 1 1701 1701 NI NI . H 4 ZN B 1 1702 1702 ZN ZN . I 5 HOH A 1 1801 1801 HOH HOH . I 5 HOH A 2 1802 1802 HOH HOH . I 5 HOH A 3 1803 1803 HOH HOH . I 5 HOH A 4 1804 1804 HOH HOH . I 5 HOH A 5 1805 1805 HOH HOH . I 5 HOH A 6 1806 1806 HOH HOH . I 5 HOH A 7 1807 1807 HOH HOH . I 5 HOH A 8 1808 1808 HOH HOH . I 5 HOH A 9 1809 1809 HOH HOH . I 5 HOH A 10 1810 1810 HOH HOH . I 5 HOH A 11 1811 1811 HOH HOH . I 5 HOH A 12 1812 1812 HOH HOH . I 5 HOH A 13 1813 1813 HOH HOH . I 5 HOH A 14 1814 1814 HOH HOH . I 5 HOH A 15 1815 1815 HOH HOH . I 5 HOH A 16 1816 1816 HOH HOH . I 5 HOH A 17 1817 1817 HOH HOH . I 5 HOH A 18 1818 1818 HOH HOH . I 5 HOH A 19 1819 1820 HOH HOH . I 5 HOH A 20 1820 1821 HOH HOH . I 5 HOH A 21 1821 1822 HOH HOH . I 5 HOH A 22 1822 1823 HOH HOH . I 5 HOH A 23 1823 1825 HOH HOH . I 5 HOH A 24 1824 1826 HOH HOH . I 5 HOH A 25 1825 1827 HOH HOH . I 5 HOH A 26 1826 1828 HOH HOH . I 5 HOH A 27 1827 1829 HOH HOH . I 5 HOH A 28 1828 1830 HOH HOH . I 5 HOH A 29 1829 1831 HOH HOH . I 5 HOH A 30 1830 1832 HOH HOH . I 5 HOH A 31 1831 1833 HOH HOH . I 5 HOH A 32 1832 1834 HOH HOH . I 5 HOH A 33 1833 1835 HOH HOH . I 5 HOH A 34 1834 1836 HOH HOH . I 5 HOH A 35 1835 1837 HOH HOH . I 5 HOH A 36 1836 1838 HOH HOH . I 5 HOH A 37 1837 1839 HOH HOH . I 5 HOH A 38 1838 1840 HOH HOH . I 5 HOH A 39 1839 1842 HOH HOH . I 5 HOH A 40 1840 1843 HOH HOH . I 5 HOH A 41 1841 1844 HOH HOH . I 5 HOH A 42 1842 1845 HOH HOH . I 5 HOH A 43 1843 1846 HOH HOH . I 5 HOH A 44 1844 1847 HOH HOH . I 5 HOH A 45 1845 1848 HOH HOH . I 5 HOH A 46 1846 1849 HOH HOH . I 5 HOH A 47 1847 1850 HOH HOH . I 5 HOH A 48 1848 1851 HOH HOH . I 5 HOH A 49 1849 1852 HOH HOH . I 5 HOH A 50 1850 1853 HOH HOH . I 5 HOH A 51 1851 1854 HOH HOH . I 5 HOH A 52 1852 1855 HOH HOH . I 5 HOH A 53 1853 1856 HOH HOH . I 5 HOH A 54 1854 1857 HOH HOH . I 5 HOH A 55 1855 1858 HOH HOH . I 5 HOH A 56 1856 1859 HOH HOH . I 5 HOH A 57 1857 1860 HOH HOH . I 5 HOH A 58 1858 1861 HOH HOH . I 5 HOH A 59 1859 1862 HOH HOH . I 5 HOH A 60 1860 1864 HOH HOH . I 5 HOH A 61 1861 1865 HOH HOH . I 5 HOH A 62 1862 1866 HOH HOH . I 5 HOH A 63 1863 1867 HOH HOH . I 5 HOH A 64 1864 1868 HOH HOH . I 5 HOH A 65 1865 1869 HOH HOH . I 5 HOH A 66 1866 1870 HOH HOH . I 5 HOH A 67 1867 1871 HOH HOH . I 5 HOH A 68 1868 1872 HOH HOH . I 5 HOH A 69 1869 1873 HOH HOH . I 5 HOH A 70 1870 1874 HOH HOH . I 5 HOH A 71 1871 1875 HOH HOH . I 5 HOH A 72 1872 1876 HOH HOH . I 5 HOH A 73 1873 1877 HOH HOH . I 5 HOH A 74 1874 1878 HOH HOH . I 5 HOH A 75 1875 1879 HOH HOH . I 5 HOH A 76 1876 1880 HOH HOH . I 5 HOH A 77 1877 1881 HOH HOH . I 5 HOH A 78 1878 1883 HOH HOH . I 5 HOH A 79 1879 1885 HOH HOH . I 5 HOH A 80 1880 1886 HOH HOH . I 5 HOH A 81 1881 1888 HOH HOH . I 5 HOH A 82 1882 1890 HOH HOH . I 5 HOH A 83 1883 1891 HOH HOH . I 5 HOH A 84 1884 1892 HOH HOH . I 5 HOH A 85 1885 1895 HOH HOH . I 5 HOH A 86 1886 1896 HOH HOH . I 5 HOH A 87 1887 1898 HOH HOH . I 5 HOH A 88 1888 1901 HOH HOH . J 5 HOH B 1 1801 1801 HOH HOH . J 5 HOH B 2 1802 1802 HOH HOH . J 5 HOH B 3 1803 1803 HOH HOH . J 5 HOH B 4 1804 1804 HOH HOH . J 5 HOH B 5 1805 1805 HOH HOH . J 5 HOH B 6 1806 1806 HOH HOH . J 5 HOH B 7 1807 1807 HOH HOH . J 5 HOH B 8 1808 1808 HOH HOH . J 5 HOH B 9 1809 1809 HOH HOH . J 5 HOH B 10 1810 1810 HOH HOH . J 5 HOH B 11 1811 1811 HOH HOH . J 5 HOH B 12 1812 1812 HOH HOH . J 5 HOH B 13 1813 1813 HOH HOH . J 5 HOH B 14 1814 1814 HOH HOH . J 5 HOH B 15 1815 1815 HOH HOH . J 5 HOH B 16 1816 1816 HOH HOH . J 5 HOH B 17 1817 1817 HOH HOH . J 5 HOH B 18 1818 1818 HOH HOH . J 5 HOH B 19 1819 1819 HOH HOH . J 5 HOH B 20 1820 1820 HOH HOH . J 5 HOH B 21 1821 1821 HOH HOH . J 5 HOH B 22 1822 1822 HOH HOH . J 5 HOH B 23 1823 1824 HOH HOH . J 5 HOH B 24 1824 1825 HOH HOH . J 5 HOH B 25 1825 1826 HOH HOH . J 5 HOH B 26 1826 1827 HOH HOH . J 5 HOH B 27 1827 1828 HOH HOH . J 5 HOH B 28 1828 1829 HOH HOH . J 5 HOH B 29 1829 1830 HOH HOH . J 5 HOH B 30 1830 1831 HOH HOH . J 5 HOH B 31 1831 1832 HOH HOH . J 5 HOH B 32 1832 1833 HOH HOH . J 5 HOH B 33 1833 1834 HOH HOH . J 5 HOH B 34 1834 1835 HOH HOH . J 5 HOH B 35 1835 1836 HOH HOH . J 5 HOH B 36 1836 1837 HOH HOH . J 5 HOH B 37 1837 1838 HOH HOH . J 5 HOH B 38 1838 1839 HOH HOH . J 5 HOH B 39 1839 1840 HOH HOH . J 5 HOH B 40 1840 1841 HOH HOH . J 5 HOH B 41 1841 1842 HOH HOH . J 5 HOH B 42 1842 1843 HOH HOH . J 5 HOH B 43 1843 1844 HOH HOH . J 5 HOH B 44 1844 1845 HOH HOH . J 5 HOH B 45 1845 1846 HOH HOH . J 5 HOH B 46 1846 1847 HOH HOH . J 5 HOH B 47 1847 1848 HOH HOH . J 5 HOH B 48 1848 1850 HOH HOH . J 5 HOH B 49 1849 1851 HOH HOH . J 5 HOH B 50 1850 1852 HOH HOH . J 5 HOH B 51 1851 1853 HOH HOH . J 5 HOH B 52 1852 1854 HOH HOH . J 5 HOH B 53 1853 1855 HOH HOH . J 5 HOH B 54 1854 1856 HOH HOH . J 5 HOH B 55 1855 1858 HOH HOH . J 5 HOH B 56 1856 1859 HOH HOH . J 5 HOH B 57 1857 1860 HOH HOH . J 5 HOH B 58 1858 1861 HOH HOH . J 5 HOH B 59 1859 1862 HOH HOH . J 5 HOH B 60 1860 1863 HOH HOH . J 5 HOH B 61 1861 1864 HOH HOH . J 5 HOH B 62 1862 1865 HOH HOH . J 5 HOH B 63 1863 1866 HOH HOH . J 5 HOH B 64 1864 1867 HOH HOH . J 5 HOH B 65 1865 1868 HOH HOH . J 5 HOH B 66 1866 1869 HOH HOH . J 5 HOH B 67 1867 1870 HOH HOH . J 5 HOH B 68 1868 1873 HOH HOH . J 5 HOH B 69 1869 1874 HOH HOH . J 5 HOH B 70 1870 1875 HOH HOH . J 5 HOH B 71 1871 1876 HOH HOH . J 5 HOH B 72 1872 1877 HOH HOH . J 5 HOH B 73 1873 1878 HOH HOH . J 5 HOH B 74 1874 1880 HOH HOH . J 5 HOH B 75 1875 1881 HOH HOH . J 5 HOH B 76 1876 1882 HOH HOH . J 5 HOH B 77 1877 1883 HOH HOH . J 5 HOH B 78 1878 1884 HOH HOH . J 5 HOH B 79 1879 1885 HOH HOH . J 5 HOH B 80 1880 1886 HOH HOH . J 5 HOH B 81 1881 1887 HOH HOH . J 5 HOH B 82 1882 1888 HOH HOH . J 5 HOH B 83 1883 1889 HOH HOH . J 5 HOH B 84 1884 1890 HOH HOH . J 5 HOH B 85 1885 1891 HOH HOH . J 5 HOH B 86 1886 1892 HOH HOH . J 5 HOH B 87 1887 1894 HOH HOH . J 5 HOH B 88 1888 1895 HOH HOH . J 5 HOH B 89 1889 1896 HOH HOH . J 5 HOH B 90 1890 1897 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 5.263 _atom_site.Cartn_y -1.178 _atom_site.Cartn_z -38.971 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.99 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 1701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #