data_4EZ4 # _model_server_result.job_id kSilRElNu6yJ7J-QFsueYg _model_server_result.datetime_utc '2024-11-13 20:16:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ez4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1702}' # _entry.id 4EZ4 # _exptl.entry_id 4EZ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.62 _cell.angle_gamma 90 _cell.entry_id 4EZ4 _cell.length_a 57.66 _cell.length_b 123.707 _cell.length_c 82.043 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 233 A HIS 1390 1_555 D NI NI . A NI 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc2 A OE2 GLU 235 A GLU 1392 1_555 D NI NI . A NI 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc3 A NE2 HIS 313 A HIS 1470 1_555 D NI NI . A NI 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc4 A SG CYS 418 A CYS 1575 1_555 E ZN ZN . A ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc5 A SG CYS 421 A CYS 1578 1_555 E ZN ZN . A ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc6 A SG CYS 445 A CYS 1602 1_555 E ZN ZN . A ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc7 A SG CYS 448 A CYS 1605 1_555 E ZN ZN . A ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc8 C O2' OGA . A OGA 1701 1_555 D NI NI . A NI 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc9 C O2 OGA . A OGA 1701 1_555 D NI NI . A NI 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc10 B NE2 HIS 233 B HIS 1390 1_555 G NI NI . B NI 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc11 B OE2 GLU 235 B GLU 1392 1_555 G NI NI . B NI 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc12 B NE2 HIS 313 B HIS 1470 1_555 G NI NI . B NI 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc13 B SG CYS 418 B CYS 1575 1_555 H ZN ZN . B ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc14 B SG CYS 421 B CYS 1578 1_555 H ZN ZN . B ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc15 B SG CYS 445 B CYS 1602 1_555 H ZN ZN . B ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc16 B SG CYS 448 B CYS 1605 1_555 H ZN ZN . B ZN 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc17 F O2' OGA . B OGA 1701 1_555 G NI NI . B NI 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc18 F O2 OGA . B OGA 1701 1_555 G NI NI . B NI 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4EZ4 _atom_sites.fract_transf_matrix[1][1] 0.017343 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006184 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OGA A 1 1701 1701 OGA OGA . D 3 NI A 1 1702 1702 NI NI . E 4 ZN A 1 1703 1703 ZN ZN . F 2 OGA B 1 1701 1701 OGA OGA . G 3 NI B 1 1702 1702 NI NI . H 4 ZN B 1 1703 1703 ZN ZN . I 5 HOH A 1 1801 1801 HOH HOH . I 5 HOH A 2 1802 1803 HOH HOH . I 5 HOH A 3 1803 1804 HOH HOH . I 5 HOH A 4 1804 1805 HOH HOH . I 5 HOH A 5 1805 1808 HOH HOH . J 5 HOH B 1 1801 1801 HOH HOH . J 5 HOH B 2 1802 1802 HOH HOH . J 5 HOH B 3 1803 1803 HOH HOH . J 5 HOH B 4 1804 1805 HOH HOH . J 5 HOH B 5 1805 1806 HOH HOH . J 5 HOH B 6 1806 1809 HOH HOH . J 5 HOH B 7 1807 1810 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.676 _atom_site.Cartn_y -18.52 _atom_site.Cartn_z 27.875 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 1702 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 135 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #