data_4EZC # _model_server_result.job_id 85oEdO6My7lJsr8uyldezQ _model_server_result.datetime_utc '2024-11-04 22:39:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ezc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":407}' # _entry.id 4EZC # _exptl.entry_id 4EZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99 _cell.angle_gamma 90 _cell.entry_id 4EZC _cell.length_a 74.703 _cell.length_b 105.645 _cell.length_c 105.87 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 N N N ? 3 O N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 94 n n C1 C2 BOG sing 95 n n C1 O5 BOG sing 96 n n C1 H1 BOG sing 97 n n O1 C1' BOG sing 98 n n C2 O2 BOG sing 99 n n C2 C3 BOG sing 100 n n C2 H2 BOG sing 101 n n O2 HO2 BOG sing 102 n n C3 O3 BOG sing 103 n n C3 C4 BOG sing 104 n n C3 H3 BOG sing 105 n n O3 HO3 BOG sing 106 n n C4 O4 BOG sing 107 n n C4 C5 BOG sing 108 n n C4 H4 BOG sing 109 n n O4 HO4 BOG sing 110 n n C5 O5 BOG sing 111 n n C5 C6 BOG sing 112 n n C5 H5 BOG sing 113 n n C6 O6 BOG sing 114 n n C6 H61 BOG sing 115 n n C6 H62 BOG sing 116 n n O6 HO6 BOG sing 117 n n C1' C2' BOG sing 118 n n C1' "H1'1" BOG sing 119 n n C1' "H1'2" BOG sing 120 n n C2' C3' BOG sing 121 n n C2' "H2'1" BOG sing 122 n n C2' "H2'2" BOG sing 123 n n C3' C4' BOG sing 124 n n C3' "H3'1" BOG sing 125 n n C3' "H3'2" BOG sing 126 n n C4' C5' BOG sing 127 n n C4' "H4'1" BOG sing 128 n n C4' "H4'2" BOG sing 129 n n C5' C6' BOG sing 130 n n C5' "H5'1" BOG sing 131 n n C5' "H5'2" BOG sing 132 n n C6' C7' BOG sing 133 n n C6' "H6'1" BOG sing 134 n n C6' "H6'2" BOG sing 135 n n C7' C8' BOG sing 136 n n C7' "H7'1" BOG sing 137 n n C7' "H7'2" BOG sing 138 n n C8' "H8'1" BOG sing 139 n n C8' "H8'2" BOG sing 140 n n C8' "H8'3" BOG sing 141 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4EZC _atom_sites.fract_transf_matrix[1][1] 0.013386 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002119 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 BGC A 1 401 4 BGC BGC . E 2 BGC A 1 402 8 BGC BGC . F 3 BOG A 1 403 1 BOG BOG . G 3 BOG A 1 404 2 BOG BOG . H 3 BOG A 1 405 4 BOG BOG . I 3 BOG A 1 406 10 BOG BOG . J 4 SPL A 1 407 3 SPL SPL . K 2 BGC B 1 401 1 BGC BGC . L 2 BGC B 1 402 5 BGC BGC . M 2 BGC B 1 403 7 BGC BGC . N 3 BOG B 1 404 6 BOG BOG . O 3 BOG B 1 405 9 BOG BOG . P 4 SPL B 1 406 1 SPL SPL . Q 2 BGC C 1 401 2 BGC BGC . R 2 BGC C 1 402 3 BGC BGC . S 2 BGC C 1 403 6 BGC BGC . T 3 BOG C 1 404 3 BOG BOG . U 3 BOG C 1 405 5 BOG BOG . V 3 BOG C 1 406 7 BOG BOG . W 3 BOG C 1 407 8 BOG BOG . X 4 SPL C 1 408 2 SPL SPL . Y 5 HOH A 1 501 1 HOH HOH . Y 5 HOH A 2 502 4 HOH HOH . Y 5 HOH A 3 503 13 HOH HOH . Y 5 HOH A 4 504 14 HOH HOH . Y 5 HOH A 5 505 15 HOH HOH . Y 5 HOH A 6 506 16 HOH HOH . Y 5 HOH A 7 507 17 HOH HOH . Y 5 HOH A 8 508 18 HOH HOH . Y 5 HOH A 9 509 37 HOH HOH . Y 5 HOH A 10 510 38 HOH HOH . Y 5 HOH A 11 511 39 HOH HOH . Y 5 HOH A 12 512 40 HOH HOH . Y 5 HOH A 13 513 41 HOH HOH . Y 5 HOH A 14 514 46 HOH HOH . Y 5 HOH A 15 515 47 HOH HOH . Y 5 HOH A 16 516 48 HOH HOH . Y 5 HOH A 17 517 49 HOH HOH . Y 5 HOH A 18 518 50 HOH HOH . Y 5 HOH A 19 519 51 HOH HOH . Y 5 HOH A 20 520 54 HOH HOH . Y 5 HOH A 21 521 64 HOH HOH . Y 5 HOH A 22 522 65 HOH HOH . Y 5 HOH A 23 523 66 HOH HOH . Y 5 HOH A 24 524 67 HOH HOH . Y 5 HOH A 25 525 68 HOH HOH . Y 5 HOH A 26 526 69 HOH HOH . Y 5 HOH A 27 527 70 HOH HOH . Y 5 HOH A 28 528 71 HOH HOH . Y 5 HOH A 29 529 72 HOH HOH . Y 5 HOH A 30 530 74 HOH HOH . Y 5 HOH A 31 531 75 HOH HOH . Y 5 HOH A 32 532 76 HOH HOH . Y 5 HOH A 33 533 138 HOH HOH . Y 5 HOH A 34 534 139 HOH HOH . Y 5 HOH A 35 535 140 HOH HOH . Y 5 HOH A 36 536 141 HOH HOH . Y 5 HOH A 37 537 142 HOH HOH . Y 5 HOH A 38 538 143 HOH HOH . Y 5 HOH A 39 539 144 HOH HOH . Y 5 HOH A 40 540 145 HOH HOH . Y 5 HOH A 41 541 151 HOH HOH . Y 5 HOH A 42 542 155 HOH HOH . Y 5 HOH A 43 543 160 HOH HOH . Y 5 HOH A 44 544 164 HOH HOH . Y 5 HOH A 45 545 165 HOH HOH . Y 5 HOH A 46 546 166 HOH HOH . Y 5 HOH A 47 547 167 HOH HOH . Y 5 HOH A 48 548 169 HOH HOH . Y 5 HOH A 49 549 170 HOH HOH . Y 5 HOH A 50 550 172 HOH HOH . Y 5 HOH A 51 551 176 HOH HOH . Y 5 HOH A 52 552 177 HOH HOH . Y 5 HOH A 53 553 178 HOH HOH . Y 5 HOH A 54 554 181 HOH HOH . Y 5 HOH A 55 555 182 HOH HOH . Y 5 HOH A 56 556 183 HOH HOH . Y 5 HOH A 57 557 186 HOH HOH . Y 5 HOH A 58 558 192 HOH HOH . Y 5 HOH A 59 559 193 HOH HOH . Z 5 HOH B 1 501 2 HOH HOH . Z 5 HOH B 2 502 3 HOH HOH . Z 5 HOH B 3 503 10 HOH HOH . Z 5 HOH B 4 504 11 HOH HOH . Z 5 HOH B 5 505 12 HOH HOH . Z 5 HOH B 6 506 28 HOH HOH . Z 5 HOH B 7 507 29 HOH HOH . Z 5 HOH B 8 508 30 HOH HOH . Z 5 HOH B 9 509 31 HOH HOH . Z 5 HOH B 10 510 32 HOH HOH . Z 5 HOH B 11 511 34 HOH HOH . Z 5 HOH B 12 512 35 HOH HOH . Z 5 HOH B 13 513 36 HOH HOH . Z 5 HOH B 14 514 42 HOH HOH . Z 5 HOH B 15 515 43 HOH HOH . Z 5 HOH B 16 516 44 HOH HOH . Z 5 HOH B 17 517 45 HOH HOH . Z 5 HOH B 18 518 52 HOH HOH . Z 5 HOH B 19 519 53 HOH HOH . Z 5 HOH B 20 520 63 HOH HOH . Z 5 HOH B 21 521 73 HOH HOH . Z 5 HOH B 22 522 78 HOH HOH . Z 5 HOH B 23 523 79 HOH HOH . Z 5 HOH B 24 524 80 HOH HOH . Z 5 HOH B 25 525 81 HOH HOH . Z 5 HOH B 26 526 82 HOH HOH . Z 5 HOH B 27 527 83 HOH HOH . Z 5 HOH B 28 528 85 HOH HOH . Z 5 HOH B 29 529 86 HOH HOH . Z 5 HOH B 30 530 87 HOH HOH . Z 5 HOH B 31 531 88 HOH HOH . Z 5 HOH B 32 532 89 HOH HOH . Z 5 HOH B 33 533 92 HOH HOH . Z 5 HOH B 34 534 93 HOH HOH . Z 5 HOH B 35 535 94 HOH HOH . Z 5 HOH B 36 536 95 HOH HOH . Z 5 HOH B 37 537 96 HOH HOH . Z 5 HOH B 38 538 97 HOH HOH . Z 5 HOH B 39 539 98 HOH HOH . Z 5 HOH B 40 540 99 HOH HOH . Z 5 HOH B 41 541 100 HOH HOH . Z 5 HOH B 42 542 101 HOH HOH . Z 5 HOH B 43 543 102 HOH HOH . Z 5 HOH B 44 544 103 HOH HOH . Z 5 HOH B 45 545 104 HOH HOH . Z 5 HOH B 46 546 105 HOH HOH . Z 5 HOH B 47 547 106 HOH HOH . Z 5 HOH B 48 548 123 HOH HOH . Z 5 HOH B 49 549 124 HOH HOH . Z 5 HOH B 50 550 125 HOH HOH . Z 5 HOH B 51 551 126 HOH HOH . Z 5 HOH B 52 552 129 HOH HOH . Z 5 HOH B 53 553 130 HOH HOH . Z 5 HOH B 54 554 131 HOH HOH . Z 5 HOH B 55 555 132 HOH HOH . Z 5 HOH B 56 556 133 HOH HOH . Z 5 HOH B 57 557 136 HOH HOH . Z 5 HOH B 58 558 150 HOH HOH . Z 5 HOH B 59 559 152 HOH HOH . Z 5 HOH B 60 560 153 HOH HOH . Z 5 HOH B 61 561 154 HOH HOH . Z 5 HOH B 62 562 171 HOH HOH . Z 5 HOH B 63 563 174 HOH HOH . Z 5 HOH B 64 564 175 HOH HOH . Z 5 HOH B 65 565 180 HOH HOH . Z 5 HOH B 66 566 197 HOH HOH . Z 5 HOH B 67 567 200 HOH HOH . Z 5 HOH B 68 568 201 HOH HOH . AA 5 HOH C 1 501 5 HOH HOH . AA 5 HOH C 2 502 6 HOH HOH . AA 5 HOH C 3 503 7 HOH HOH . AA 5 HOH C 4 504 8 HOH HOH . AA 5 HOH C 5 505 9 HOH HOH . AA 5 HOH C 6 506 20 HOH HOH . AA 5 HOH C 7 507 22 HOH HOH . AA 5 HOH C 8 508 23 HOH HOH . AA 5 HOH C 9 509 24 HOH HOH . AA 5 HOH C 10 510 25 HOH HOH . AA 5 HOH C 11 511 26 HOH HOH . AA 5 HOH C 12 512 27 HOH HOH . AA 5 HOH C 13 513 55 HOH HOH . AA 5 HOH C 14 514 56 HOH HOH . AA 5 HOH C 15 515 57 HOH HOH . AA 5 HOH C 16 516 59 HOH HOH . AA 5 HOH C 17 517 60 HOH HOH . AA 5 HOH C 18 518 61 HOH HOH . AA 5 HOH C 19 519 62 HOH HOH . AA 5 HOH C 20 520 77 HOH HOH . AA 5 HOH C 21 521 84 HOH HOH . AA 5 HOH C 22 522 90 HOH HOH . AA 5 HOH C 23 523 91 HOH HOH . AA 5 HOH C 24 524 107 HOH HOH . AA 5 HOH C 25 525 108 HOH HOH . AA 5 HOH C 26 526 109 HOH HOH . AA 5 HOH C 27 527 110 HOH HOH . AA 5 HOH C 28 528 111 HOH HOH . AA 5 HOH C 29 529 112 HOH HOH . AA 5 HOH C 30 530 113 HOH HOH . AA 5 HOH C 31 531 114 HOH HOH . AA 5 HOH C 32 532 115 HOH HOH . AA 5 HOH C 33 533 116 HOH HOH . AA 5 HOH C 34 534 117 HOH HOH . AA 5 HOH C 35 535 118 HOH HOH . AA 5 HOH C 36 536 119 HOH HOH . AA 5 HOH C 37 537 120 HOH HOH . AA 5 HOH C 38 538 121 HOH HOH . AA 5 HOH C 39 539 122 HOH HOH . AA 5 HOH C 40 540 127 HOH HOH . AA 5 HOH C 41 541 128 HOH HOH . AA 5 HOH C 42 542 137 HOH HOH . AA 5 HOH C 43 543 146 HOH HOH . AA 5 HOH C 44 544 147 HOH HOH . AA 5 HOH C 45 545 148 HOH HOH . AA 5 HOH C 46 546 158 HOH HOH . AA 5 HOH C 47 547 159 HOH HOH . AA 5 HOH C 48 548 161 HOH HOH . AA 5 HOH C 49 549 162 HOH HOH . AA 5 HOH C 50 550 163 HOH HOH . AA 5 HOH C 51 551 168 HOH HOH . AA 5 HOH C 52 552 173 HOH HOH . AA 5 HOH C 53 553 179 HOH HOH . AA 5 HOH C 54 554 184 HOH HOH . AA 5 HOH C 55 555 185 HOH HOH . AA 5 HOH C 56 556 187 HOH HOH . AA 5 HOH C 57 557 188 HOH HOH . AA 5 HOH C 58 558 189 HOH HOH . AA 5 HOH C 59 559 190 HOH HOH . AA 5 HOH C 60 560 191 HOH HOH . AA 5 HOH C 61 561 194 HOH HOH . AA 5 HOH C 62 562 195 HOH HOH . AA 5 HOH C 63 563 196 HOH HOH . AA 5 HOH C 64 564 198 HOH HOH . AA 5 HOH C 65 565 199 HOH HOH . AA 5 HOH C 66 566 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . W 3 39.16 7.279 59.244 1 134.23 ? C1 BOG 407 C 1 HETATM 2 O O1 BOG . . . W 3 40.035 7.174 58.115 1 108.18 ? O1 BOG 407 C 1 HETATM 3 C C2 BOG . . . W 3 39.215 8.697 59.82 1 140.67 ? C2 BOG 407 C 1 HETATM 4 O O2 BOG . . . W 3 40.559 9.018 60.199 1 142.11 ? O2 BOG 407 C 1 HETATM 5 C C3 BOG . . . W 3 38.266 8.809 61.02 1 146.41 ? C3 BOG 407 C 1 HETATM 6 O O3 BOG . . . W 3 38.255 10.137 61.555 1 152.52 ? O3 BOG 407 C 1 HETATM 7 C C4 BOG . . . W 3 36.845 8.41 60.622 1 150.04 ? C4 BOG 407 C 1 HETATM 8 O O4 BOG . . . W 3 35.987 8.421 61.775 1 147.16 ? O4 BOG 407 C 1 HETATM 9 C C5 BOG . . . W 3 36.848 7.026 59.962 1 150.41 ? C5 BOG 407 C 1 HETATM 10 O O5 BOG . . . W 3 37.802 6.966 58.879 1 147.72 ? O5 BOG 407 C 1 HETATM 11 C C6 BOG . . . W 3 35.451 6.681 59.45 1 147.34 ? C6 BOG 407 C 1 HETATM 12 O O6 BOG . . . W 3 35.275 5.259 59.44 1 154.01 ? O6 BOG 407 C 1 HETATM 13 C C1' BOG . . . W 3 40.863 6.01 58.126 1 85.99 ? C1' BOG 407 C 1 HETATM 14 C C2' BOG . . . W 3 41.589 5.913 56.784 1 74.75 ? C2' BOG 407 C 1 HETATM 15 C C3' BOG . . . W 3 42.522 4.71 56.7 1 69.17 ? C3' BOG 407 C 1 HETATM 16 C C4' BOG . . . W 3 43.606 4.948 55.653 1 73.37 ? C4' BOG 407 C 1 HETATM 17 C C5' BOG . . . W 3 43.782 3.772 54.693 1 70.47 ? C5' BOG 407 C 1 HETATM 18 C C6' BOG . . . W 3 45.131 3.838 53.985 1 70.15 ? C6' BOG 407 C 1 HETATM 19 C C7' BOG . . . W 3 45.338 2.636 53.067 1 77.3 ? C7' BOG 407 C 1 HETATM 20 C C8' BOG . . . W 3 45.789 3.039 51.671 1 75.97 ? C8' BOG 407 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #