data_4EZD
#
_model_server_result.job_id            NPp55SEpVHi5YHyRRpsZbQ 
_model_server_result.datetime_utc      '2024-11-05 23:31:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ezd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":403}' 
#
_entry.id    4EZD 
#
_exptl.entry_id    4EZD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.18 
_cell.angle_gamma         90 
_cell.entry_id            4EZD 
_cell.length_a            75.002 
_cell.length_b            106.227 
_cell.length_c            105.816 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EZD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                BGC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-glucose;D-glucose;glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 BGC sing 70 n n 
C2 C1 BGC sing 71 n n 
C2 O2 BGC sing 72 n n 
C2 H2 BGC sing 73 n n 
C3 C4 BGC sing 74 n n 
C3 O3 BGC sing 75 n n 
C3 H3 BGC sing 76 n n 
C4 C5 BGC sing 77 n n 
C4 O4 BGC sing 78 n n 
C4 H4 BGC sing 79 n n 
C5 C6 BGC sing 80 n n 
C5 O5 BGC sing 81 n n 
C5 H5 BGC sing 82 n n 
C6 O6 BGC sing 83 n n 
C6 H61 BGC sing 84 n n 
C6 H62 BGC sing 85 n n 
C1 O1 BGC sing 86 n n 
C1 O5 BGC sing 87 n n 
C1 H1 BGC sing 88 n n 
O1 HO1 BGC sing 89 n n 
O2 HO2 BGC sing 90 n n 
O3 HO3 BGC sing 91 n n 
O4 HO4 BGC sing 92 n n 
O6 HO6 BGC sing 93 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
BGC b-D-glucopyranose 'COMMON NAME' GMML 1 
BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4EZD 
_atom_sites.fract_transf_matrix[1][1]    0.013333 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001916 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009414 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SEY A 1 401 1 SEY SEY . 
E 2 SEY A 1 402 2 SEY SEY . 
F 3 BGC A 1 403 4 BGC BGC . 
G 3 BGC A 1 404 8 BGC BGC . 
H 4 BOG A 1 405 1 BOG BOG . 
I 4 BOG A 1 406 2 BOG BOG . 
J 4 BOG A 1 407 10 BOG BOG . 
K 5 SPL A 1 408 2 SPL SPL . 
L 5 SPL A 1 409 3 SPL SPL . 
M 2 SEY B 1 401 3 SEY SEY . 
N 2 SEY B 1 402 4 SEY SEY . 
O 3 BGC B 1 403 1 BGC BGC . 
P 3 BGC B 1 404 5 BGC BGC . 
Q 3 BGC B 1 405 7 BGC BGC . 
R 4 BOG B 1 406 6 BOG BOG . 
S 4 BOG B 1 407 9 BOG BOG . 
T 5 SPL B 1 408 1 SPL SPL . 
U 2 SEY C 1 401 5 SEY SEY . 
V 2 SEY C 1 402 6 SEY SEY . 
W 3 BGC C 1 403 2 BGC BGC . 
X 3 BGC C 1 404 3 BGC BGC . 
Y 3 BGC C 1 405 6 BGC BGC . 
Z 4 BOG C 1 406 3 BOG BOG . 
AA 4 BOG C 1 407 4 BOG BOG . 
BA 4 BOG C 1 408 5 BOG BOG . 
CA 4 BOG C 1 409 7 BOG BOG . 
DA 4 BOG C 1 410 8 BOG BOG . 
EA 6 HOH A 1 501 1 HOH HOH . 
EA 6 HOH A 2 502 11 HOH HOH . 
EA 6 HOH A 3 503 12 HOH HOH . 
EA 6 HOH A 4 504 13 HOH HOH . 
EA 6 HOH A 5 505 14 HOH HOH . 
EA 6 HOH A 6 506 15 HOH HOH . 
EA 6 HOH A 7 507 16 HOH HOH . 
EA 6 HOH A 8 508 31 HOH HOH . 
EA 6 HOH A 9 509 32 HOH HOH . 
EA 6 HOH A 10 510 33 HOH HOH . 
EA 6 HOH A 11 511 34 HOH HOH . 
EA 6 HOH A 12 512 35 HOH HOH . 
EA 6 HOH A 13 513 40 HOH HOH . 
EA 6 HOH A 14 514 41 HOH HOH . 
EA 6 HOH A 15 515 42 HOH HOH . 
EA 6 HOH A 16 516 43 HOH HOH . 
EA 6 HOH A 17 517 44 HOH HOH . 
EA 6 HOH A 18 518 45 HOH HOH . 
EA 6 HOH A 19 519 48 HOH HOH . 
EA 6 HOH A 20 520 57 HOH HOH . 
EA 6 HOH A 21 521 58 HOH HOH . 
EA 6 HOH A 22 522 59 HOH HOH . 
EA 6 HOH A 23 523 60 HOH HOH . 
EA 6 HOH A 24 524 61 HOH HOH . 
EA 6 HOH A 25 525 62 HOH HOH . 
EA 6 HOH A 26 526 63 HOH HOH . 
EA 6 HOH A 27 527 64 HOH HOH . 
EA 6 HOH A 28 528 65 HOH HOH . 
EA 6 HOH A 29 529 67 HOH HOH . 
EA 6 HOH A 30 530 68 HOH HOH . 
EA 6 HOH A 31 531 125 HOH HOH . 
EA 6 HOH A 32 532 126 HOH HOH . 
EA 6 HOH A 33 533 127 HOH HOH . 
EA 6 HOH A 34 534 128 HOH HOH . 
EA 6 HOH A 35 535 129 HOH HOH . 
EA 6 HOH A 36 536 130 HOH HOH . 
EA 6 HOH A 37 537 131 HOH HOH . 
EA 6 HOH A 38 538 132 HOH HOH . 
EA 6 HOH A 39 539 137 HOH HOH . 
EA 6 HOH A 40 540 141 HOH HOH . 
EA 6 HOH A 41 541 144 HOH HOH . 
EA 6 HOH A 42 542 148 HOH HOH . 
EA 6 HOH A 43 543 149 HOH HOH . 
EA 6 HOH A 44 544 151 HOH HOH . 
EA 6 HOH A 45 545 152 HOH HOH . 
EA 6 HOH A 46 546 154 HOH HOH . 
EA 6 HOH A 47 547 158 HOH HOH . 
EA 6 HOH A 48 548 159 HOH HOH . 
EA 6 HOH A 49 549 160 HOH HOH . 
EA 6 HOH A 50 550 164 HOH HOH . 
EA 6 HOH A 51 551 165 HOH HOH . 
EA 6 HOH A 52 552 166 HOH HOH . 
EA 6 HOH A 53 553 167 HOH HOH . 
EA 6 HOH A 54 554 168 HOH HOH . 
EA 6 HOH A 55 555 169 HOH HOH . 
EA 6 HOH A 56 556 170 HOH HOH . 
EA 6 HOH A 57 557 171 HOH HOH . 
EA 6 HOH A 58 558 172 HOH HOH . 
EA 6 HOH A 59 559 173 HOH HOH . 
EA 6 HOH A 60 560 174 HOH HOH . 
FA 6 HOH B 1 501 2 HOH HOH . 
FA 6 HOH B 2 502 3 HOH HOH . 
FA 6 HOH B 3 503 9 HOH HOH . 
FA 6 HOH B 4 504 10 HOH HOH . 
FA 6 HOH B 5 505 23 HOH HOH . 
FA 6 HOH B 6 506 24 HOH HOH . 
FA 6 HOH B 7 507 25 HOH HOH . 
FA 6 HOH B 8 508 26 HOH HOH . 
FA 6 HOH B 9 509 27 HOH HOH . 
FA 6 HOH B 10 510 28 HOH HOH . 
FA 6 HOH B 11 511 29 HOH HOH . 
FA 6 HOH B 12 512 30 HOH HOH . 
FA 6 HOH B 13 513 36 HOH HOH . 
FA 6 HOH B 14 514 37 HOH HOH . 
FA 6 HOH B 15 515 38 HOH HOH . 
FA 6 HOH B 16 516 39 HOH HOH . 
FA 6 HOH B 17 517 46 HOH HOH . 
FA 6 HOH B 18 518 47 HOH HOH . 
FA 6 HOH B 19 519 56 HOH HOH . 
FA 6 HOH B 20 520 66 HOH HOH . 
FA 6 HOH B 21 521 70 HOH HOH . 
FA 6 HOH B 22 522 71 HOH HOH . 
FA 6 HOH B 23 523 72 HOH HOH . 
FA 6 HOH B 24 524 73 HOH HOH . 
FA 6 HOH B 25 525 74 HOH HOH . 
FA 6 HOH B 26 526 75 HOH HOH . 
FA 6 HOH B 27 527 77 HOH HOH . 
FA 6 HOH B 28 528 78 HOH HOH . 
FA 6 HOH B 29 529 79 HOH HOH . 
FA 6 HOH B 30 530 80 HOH HOH . 
FA 6 HOH B 31 531 83 HOH HOH . 
FA 6 HOH B 32 532 84 HOH HOH . 
FA 6 HOH B 33 533 85 HOH HOH . 
FA 6 HOH B 34 534 86 HOH HOH . 
FA 6 HOH B 35 535 87 HOH HOH . 
FA 6 HOH B 36 536 88 HOH HOH . 
FA 6 HOH B 37 537 89 HOH HOH . 
FA 6 HOH B 38 538 90 HOH HOH . 
FA 6 HOH B 39 539 91 HOH HOH . 
FA 6 HOH B 40 540 92 HOH HOH . 
FA 6 HOH B 41 541 93 HOH HOH . 
FA 6 HOH B 42 542 94 HOH HOH . 
FA 6 HOH B 43 543 95 HOH HOH . 
FA 6 HOH B 44 544 96 HOH HOH . 
FA 6 HOH B 45 545 113 HOH HOH . 
FA 6 HOH B 46 546 114 HOH HOH . 
FA 6 HOH B 47 547 115 HOH HOH . 
FA 6 HOH B 48 548 118 HOH HOH . 
FA 6 HOH B 49 549 119 HOH HOH . 
FA 6 HOH B 50 550 120 HOH HOH . 
FA 6 HOH B 51 551 121 HOH HOH . 
FA 6 HOH B 52 552 122 HOH HOH . 
FA 6 HOH B 53 553 123 HOH HOH . 
FA 6 HOH B 54 554 136 HOH HOH . 
FA 6 HOH B 55 555 138 HOH HOH . 
FA 6 HOH B 56 556 139 HOH HOH . 
FA 6 HOH B 57 557 140 HOH HOH . 
FA 6 HOH B 58 558 153 HOH HOH . 
FA 6 HOH B 59 559 156 HOH HOH . 
FA 6 HOH B 60 560 157 HOH HOH . 
FA 6 HOH B 61 561 162 HOH HOH . 
FA 6 HOH B 62 562 179 HOH HOH . 
FA 6 HOH B 63 563 180 HOH HOH . 
FA 6 HOH B 64 564 183 HOH HOH . 
GA 6 HOH C 1 501 4 HOH HOH . 
GA 6 HOH C 2 502 5 HOH HOH . 
GA 6 HOH C 3 503 6 HOH HOH . 
GA 6 HOH C 4 504 7 HOH HOH . 
GA 6 HOH C 5 505 8 HOH HOH . 
GA 6 HOH C 6 506 17 HOH HOH . 
GA 6 HOH C 7 507 18 HOH HOH . 
GA 6 HOH C 8 508 19 HOH HOH . 
GA 6 HOH C 9 509 20 HOH HOH . 
GA 6 HOH C 10 510 21 HOH HOH . 
GA 6 HOH C 11 511 22 HOH HOH . 
GA 6 HOH C 12 512 49 HOH HOH . 
GA 6 HOH C 13 513 50 HOH HOH . 
GA 6 HOH C 14 514 51 HOH HOH . 
GA 6 HOH C 15 515 52 HOH HOH . 
GA 6 HOH C 16 516 53 HOH HOH . 
GA 6 HOH C 17 517 54 HOH HOH . 
GA 6 HOH C 18 518 55 HOH HOH . 
GA 6 HOH C 19 519 69 HOH HOH . 
GA 6 HOH C 20 520 76 HOH HOH . 
GA 6 HOH C 21 521 81 HOH HOH . 
GA 6 HOH C 22 522 82 HOH HOH . 
GA 6 HOH C 23 523 97 HOH HOH . 
GA 6 HOH C 24 524 98 HOH HOH . 
GA 6 HOH C 25 525 99 HOH HOH . 
GA 6 HOH C 26 526 100 HOH HOH . 
GA 6 HOH C 27 527 101 HOH HOH . 
GA 6 HOH C 28 528 102 HOH HOH . 
GA 6 HOH C 29 529 103 HOH HOH . 
GA 6 HOH C 30 530 104 HOH HOH . 
GA 6 HOH C 31 531 105 HOH HOH . 
GA 6 HOH C 32 532 106 HOH HOH . 
GA 6 HOH C 33 533 107 HOH HOH . 
GA 6 HOH C 34 534 108 HOH HOH . 
GA 6 HOH C 35 535 109 HOH HOH . 
GA 6 HOH C 36 536 110 HOH HOH . 
GA 6 HOH C 37 537 111 HOH HOH . 
GA 6 HOH C 38 538 112 HOH HOH . 
GA 6 HOH C 39 539 116 HOH HOH . 
GA 6 HOH C 40 540 117 HOH HOH . 
GA 6 HOH C 41 541 124 HOH HOH . 
GA 6 HOH C 42 542 133 HOH HOH . 
GA 6 HOH C 43 543 134 HOH HOH . 
GA 6 HOH C 44 544 135 HOH HOH . 
GA 6 HOH C 45 545 142 HOH HOH . 
GA 6 HOH C 46 546 143 HOH HOH . 
GA 6 HOH C 47 547 145 HOH HOH . 
GA 6 HOH C 48 548 146 HOH HOH . 
GA 6 HOH C 49 549 147 HOH HOH . 
GA 6 HOH C 50 550 150 HOH HOH . 
GA 6 HOH C 51 551 155 HOH HOH . 
GA 6 HOH C 52 552 161 HOH HOH . 
GA 6 HOH C 53 553 163 HOH HOH . 
GA 6 HOH C 54 554 175 HOH HOH . 
GA 6 HOH C 55 555 176 HOH HOH . 
GA 6 HOH C 56 556 177 HOH HOH . 
GA 6 HOH C 57 557 178 HOH HOH . 
GA 6 HOH C 58 558 181 HOH HOH . 
GA 6 HOH C 59 559 182 HOH HOH . 
GA 6 HOH C 60 560 184 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 BGC . . . O 3 38.287 -20.995 -3.295 1 70.59 ? C2 BGC 403 B 1 
HETATM 2 C C3 BGC . . . O 3 38.615 -22.218 -4.159 1 72.44 ? C3 BGC 403 B 1 
HETATM 3 C C4 BGC . . . O 3 37.606 -22.268 -5.311 1 74.47 ? C4 BGC 403 B 1 
HETATM 4 C C5 BGC . . . O 3 37.678 -20.965 -6.136 1 73.32 ? C5 BGC 403 B 1 
HETATM 5 C C6 BGC . . . O 3 36.537 -20.849 -7.144 1 71.33 ? C6 BGC 403 B 1 
HETATM 6 C C1 BGC . . . O 3 38.579 -19.796 -4.205 1 68.63 ? C1 BGC 403 B 1 
HETATM 7 O O1 BGC . . . O 3 38.547 -18.529 -3.538 1 63.67 ? O1 BGC 403 B 1 
HETATM 8 O O2 BGC . . . O 3 39.05 -20.981 -2.077 1 68.93 ? O2 BGC 403 B 1 
HETATM 9 O O3 BGC . . . O 3 38.656 -23.442 -3.415 1 69.2 ? O3 BGC 403 B 1 
HETATM 10 O O4 BGC . . . O 3 37.858 -23.424 -6.115 1 73.01 ? O4 BGC 403 B 1 
HETATM 11 O O5 BGC . . . O 3 37.627 -19.806 -5.28 1 70.61 ? O5 BGC 403 B 1 
HETATM 12 O O6 BGC . . . O 3 37.025 -21.074 -8.471 1 72.77 ? O6 BGC 403 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#