data_4EZD # _model_server_result.job_id Lqm_DGVNXyFdvAA_l8QXXg _model_server_result.datetime_utc '2024-11-05 23:30:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ezd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":409}' # _entry.id 4EZD # _exptl.entry_id 4EZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.18 _cell.angle_gamma 90 _cell.entry_id 4EZD _cell.length_a 75.002 _cell.length_b 106.227 _cell.length_c 105.816 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N ? 4 R N N ? 4 S N N ? 4 Z N N ? 4 AA N N ? 4 BA N N ? 4 CA N N ? 4 DA N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 94 n n C1 C2 BOG sing 95 n n C1 O5 BOG sing 96 n n C1 H1 BOG sing 97 n n O1 C1' BOG sing 98 n n C2 O2 BOG sing 99 n n C2 C3 BOG sing 100 n n C2 H2 BOG sing 101 n n O2 HO2 BOG sing 102 n n C3 O3 BOG sing 103 n n C3 C4 BOG sing 104 n n C3 H3 BOG sing 105 n n O3 HO3 BOG sing 106 n n C4 O4 BOG sing 107 n n C4 C5 BOG sing 108 n n C4 H4 BOG sing 109 n n O4 HO4 BOG sing 110 n n C5 O5 BOG sing 111 n n C5 C6 BOG sing 112 n n C5 H5 BOG sing 113 n n C6 O6 BOG sing 114 n n C6 H61 BOG sing 115 n n C6 H62 BOG sing 116 n n O6 HO6 BOG sing 117 n n C1' C2' BOG sing 118 n n C1' "H1'1" BOG sing 119 n n C1' "H1'2" BOG sing 120 n n C2' C3' BOG sing 121 n n C2' "H2'1" BOG sing 122 n n C2' "H2'2" BOG sing 123 n n C3' C4' BOG sing 124 n n C3' "H3'1" BOG sing 125 n n C3' "H3'2" BOG sing 126 n n C4' C5' BOG sing 127 n n C4' "H4'1" BOG sing 128 n n C4' "H4'2" BOG sing 129 n n C5' C6' BOG sing 130 n n C5' "H5'1" BOG sing 131 n n C5' "H5'2" BOG sing 132 n n C6' C7' BOG sing 133 n n C6' "H6'1" BOG sing 134 n n C6' "H6'2" BOG sing 135 n n C7' C8' BOG sing 136 n n C7' "H7'1" BOG sing 137 n n C7' "H7'2" BOG sing 138 n n C8' "H8'1" BOG sing 139 n n C8' "H8'2" BOG sing 140 n n C8' "H8'3" BOG sing 141 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4EZD _atom_sites.fract_transf_matrix[1][1] 0.013333 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001916 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SEY A 1 401 1 SEY SEY . E 2 SEY A 1 402 2 SEY SEY . F 3 BGC A 1 403 4 BGC BGC . G 3 BGC A 1 404 8 BGC BGC . H 4 BOG A 1 405 1 BOG BOG . I 4 BOG A 1 406 2 BOG BOG . J 4 BOG A 1 407 10 BOG BOG . K 5 SPL A 1 408 2 SPL SPL . L 5 SPL A 1 409 3 SPL SPL . M 2 SEY B 1 401 3 SEY SEY . N 2 SEY B 1 402 4 SEY SEY . O 3 BGC B 1 403 1 BGC BGC . P 3 BGC B 1 404 5 BGC BGC . Q 3 BGC B 1 405 7 BGC BGC . R 4 BOG B 1 406 6 BOG BOG . S 4 BOG B 1 407 9 BOG BOG . T 5 SPL B 1 408 1 SPL SPL . U 2 SEY C 1 401 5 SEY SEY . V 2 SEY C 1 402 6 SEY SEY . W 3 BGC C 1 403 2 BGC BGC . X 3 BGC C 1 404 3 BGC BGC . Y 3 BGC C 1 405 6 BGC BGC . Z 4 BOG C 1 406 3 BOG BOG . AA 4 BOG C 1 407 4 BOG BOG . BA 4 BOG C 1 408 5 BOG BOG . CA 4 BOG C 1 409 7 BOG BOG . DA 4 BOG C 1 410 8 BOG BOG . EA 6 HOH A 1 501 1 HOH HOH . EA 6 HOH A 2 502 11 HOH HOH . EA 6 HOH A 3 503 12 HOH HOH . EA 6 HOH A 4 504 13 HOH HOH . EA 6 HOH A 5 505 14 HOH HOH . EA 6 HOH A 6 506 15 HOH HOH . EA 6 HOH A 7 507 16 HOH HOH . EA 6 HOH A 8 508 31 HOH HOH . EA 6 HOH A 9 509 32 HOH HOH . EA 6 HOH A 10 510 33 HOH HOH . EA 6 HOH A 11 511 34 HOH HOH . EA 6 HOH A 12 512 35 HOH HOH . EA 6 HOH A 13 513 40 HOH HOH . EA 6 HOH A 14 514 41 HOH HOH . EA 6 HOH A 15 515 42 HOH HOH . EA 6 HOH A 16 516 43 HOH HOH . EA 6 HOH A 17 517 44 HOH HOH . EA 6 HOH A 18 518 45 HOH HOH . EA 6 HOH A 19 519 48 HOH HOH . EA 6 HOH A 20 520 57 HOH HOH . EA 6 HOH A 21 521 58 HOH HOH . EA 6 HOH A 22 522 59 HOH HOH . EA 6 HOH A 23 523 60 HOH HOH . EA 6 HOH A 24 524 61 HOH HOH . EA 6 HOH A 25 525 62 HOH HOH . EA 6 HOH A 26 526 63 HOH HOH . EA 6 HOH A 27 527 64 HOH HOH . EA 6 HOH A 28 528 65 HOH HOH . EA 6 HOH A 29 529 67 HOH HOH . EA 6 HOH A 30 530 68 HOH HOH . EA 6 HOH A 31 531 125 HOH HOH . EA 6 HOH A 32 532 126 HOH HOH . EA 6 HOH A 33 533 127 HOH HOH . EA 6 HOH A 34 534 128 HOH HOH . EA 6 HOH A 35 535 129 HOH HOH . EA 6 HOH A 36 536 130 HOH HOH . EA 6 HOH A 37 537 131 HOH HOH . EA 6 HOH A 38 538 132 HOH HOH . EA 6 HOH A 39 539 137 HOH HOH . EA 6 HOH A 40 540 141 HOH HOH . EA 6 HOH A 41 541 144 HOH HOH . EA 6 HOH A 42 542 148 HOH HOH . EA 6 HOH A 43 543 149 HOH HOH . EA 6 HOH A 44 544 151 HOH HOH . EA 6 HOH A 45 545 152 HOH HOH . EA 6 HOH A 46 546 154 HOH HOH . EA 6 HOH A 47 547 158 HOH HOH . EA 6 HOH A 48 548 159 HOH HOH . EA 6 HOH A 49 549 160 HOH HOH . EA 6 HOH A 50 550 164 HOH HOH . EA 6 HOH A 51 551 165 HOH HOH . EA 6 HOH A 52 552 166 HOH HOH . EA 6 HOH A 53 553 167 HOH HOH . EA 6 HOH A 54 554 168 HOH HOH . EA 6 HOH A 55 555 169 HOH HOH . EA 6 HOH A 56 556 170 HOH HOH . EA 6 HOH A 57 557 171 HOH HOH . EA 6 HOH A 58 558 172 HOH HOH . EA 6 HOH A 59 559 173 HOH HOH . EA 6 HOH A 60 560 174 HOH HOH . FA 6 HOH B 1 501 2 HOH HOH . FA 6 HOH B 2 502 3 HOH HOH . FA 6 HOH B 3 503 9 HOH HOH . FA 6 HOH B 4 504 10 HOH HOH . FA 6 HOH B 5 505 23 HOH HOH . FA 6 HOH B 6 506 24 HOH HOH . FA 6 HOH B 7 507 25 HOH HOH . FA 6 HOH B 8 508 26 HOH HOH . FA 6 HOH B 9 509 27 HOH HOH . FA 6 HOH B 10 510 28 HOH HOH . FA 6 HOH B 11 511 29 HOH HOH . FA 6 HOH B 12 512 30 HOH HOH . FA 6 HOH B 13 513 36 HOH HOH . FA 6 HOH B 14 514 37 HOH HOH . FA 6 HOH B 15 515 38 HOH HOH . FA 6 HOH B 16 516 39 HOH HOH . FA 6 HOH B 17 517 46 HOH HOH . FA 6 HOH B 18 518 47 HOH HOH . FA 6 HOH B 19 519 56 HOH HOH . FA 6 HOH B 20 520 66 HOH HOH . FA 6 HOH B 21 521 70 HOH HOH . FA 6 HOH B 22 522 71 HOH HOH . FA 6 HOH B 23 523 72 HOH HOH . FA 6 HOH B 24 524 73 HOH HOH . FA 6 HOH B 25 525 74 HOH HOH . FA 6 HOH B 26 526 75 HOH HOH . FA 6 HOH B 27 527 77 HOH HOH . FA 6 HOH B 28 528 78 HOH HOH . FA 6 HOH B 29 529 79 HOH HOH . FA 6 HOH B 30 530 80 HOH HOH . FA 6 HOH B 31 531 83 HOH HOH . FA 6 HOH B 32 532 84 HOH HOH . FA 6 HOH B 33 533 85 HOH HOH . FA 6 HOH B 34 534 86 HOH HOH . FA 6 HOH B 35 535 87 HOH HOH . FA 6 HOH B 36 536 88 HOH HOH . FA 6 HOH B 37 537 89 HOH HOH . FA 6 HOH B 38 538 90 HOH HOH . FA 6 HOH B 39 539 91 HOH HOH . FA 6 HOH B 40 540 92 HOH HOH . FA 6 HOH B 41 541 93 HOH HOH . FA 6 HOH B 42 542 94 HOH HOH . FA 6 HOH B 43 543 95 HOH HOH . FA 6 HOH B 44 544 96 HOH HOH . FA 6 HOH B 45 545 113 HOH HOH . FA 6 HOH B 46 546 114 HOH HOH . FA 6 HOH B 47 547 115 HOH HOH . FA 6 HOH B 48 548 118 HOH HOH . FA 6 HOH B 49 549 119 HOH HOH . FA 6 HOH B 50 550 120 HOH HOH . FA 6 HOH B 51 551 121 HOH HOH . FA 6 HOH B 52 552 122 HOH HOH . FA 6 HOH B 53 553 123 HOH HOH . FA 6 HOH B 54 554 136 HOH HOH . FA 6 HOH B 55 555 138 HOH HOH . FA 6 HOH B 56 556 139 HOH HOH . FA 6 HOH B 57 557 140 HOH HOH . FA 6 HOH B 58 558 153 HOH HOH . FA 6 HOH B 59 559 156 HOH HOH . FA 6 HOH B 60 560 157 HOH HOH . FA 6 HOH B 61 561 162 HOH HOH . FA 6 HOH B 62 562 179 HOH HOH . FA 6 HOH B 63 563 180 HOH HOH . FA 6 HOH B 64 564 183 HOH HOH . GA 6 HOH C 1 501 4 HOH HOH . GA 6 HOH C 2 502 5 HOH HOH . GA 6 HOH C 3 503 6 HOH HOH . GA 6 HOH C 4 504 7 HOH HOH . GA 6 HOH C 5 505 8 HOH HOH . GA 6 HOH C 6 506 17 HOH HOH . GA 6 HOH C 7 507 18 HOH HOH . GA 6 HOH C 8 508 19 HOH HOH . GA 6 HOH C 9 509 20 HOH HOH . GA 6 HOH C 10 510 21 HOH HOH . GA 6 HOH C 11 511 22 HOH HOH . GA 6 HOH C 12 512 49 HOH HOH . GA 6 HOH C 13 513 50 HOH HOH . GA 6 HOH C 14 514 51 HOH HOH . GA 6 HOH C 15 515 52 HOH HOH . GA 6 HOH C 16 516 53 HOH HOH . GA 6 HOH C 17 517 54 HOH HOH . GA 6 HOH C 18 518 55 HOH HOH . GA 6 HOH C 19 519 69 HOH HOH . GA 6 HOH C 20 520 76 HOH HOH . GA 6 HOH C 21 521 81 HOH HOH . GA 6 HOH C 22 522 82 HOH HOH . GA 6 HOH C 23 523 97 HOH HOH . GA 6 HOH C 24 524 98 HOH HOH . GA 6 HOH C 25 525 99 HOH HOH . GA 6 HOH C 26 526 100 HOH HOH . GA 6 HOH C 27 527 101 HOH HOH . GA 6 HOH C 28 528 102 HOH HOH . GA 6 HOH C 29 529 103 HOH HOH . GA 6 HOH C 30 530 104 HOH HOH . GA 6 HOH C 31 531 105 HOH HOH . GA 6 HOH C 32 532 106 HOH HOH . GA 6 HOH C 33 533 107 HOH HOH . GA 6 HOH C 34 534 108 HOH HOH . GA 6 HOH C 35 535 109 HOH HOH . GA 6 HOH C 36 536 110 HOH HOH . GA 6 HOH C 37 537 111 HOH HOH . GA 6 HOH C 38 538 112 HOH HOH . GA 6 HOH C 39 539 116 HOH HOH . GA 6 HOH C 40 540 117 HOH HOH . GA 6 HOH C 41 541 124 HOH HOH . GA 6 HOH C 42 542 133 HOH HOH . GA 6 HOH C 43 543 134 HOH HOH . GA 6 HOH C 44 544 135 HOH HOH . GA 6 HOH C 45 545 142 HOH HOH . GA 6 HOH C 46 546 143 HOH HOH . GA 6 HOH C 47 547 145 HOH HOH . GA 6 HOH C 48 548 146 HOH HOH . GA 6 HOH C 49 549 147 HOH HOH . GA 6 HOH C 50 550 150 HOH HOH . GA 6 HOH C 51 551 155 HOH HOH . GA 6 HOH C 52 552 161 HOH HOH . GA 6 HOH C 53 553 163 HOH HOH . GA 6 HOH C 54 554 175 HOH HOH . GA 6 HOH C 55 555 176 HOH HOH . GA 6 HOH C 56 556 177 HOH HOH . GA 6 HOH C 57 557 178 HOH HOH . GA 6 HOH C 58 558 181 HOH HOH . GA 6 HOH C 59 559 182 HOH HOH . GA 6 HOH C 60 560 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . CA 4 7.835 28.55 30.081 1 81.6 ? C1 BOG 409 C 1 HETATM 2 O O1 BOG . . . CA 4 8.511 29.079 28.94 1 78.55 ? O1 BOG 409 C 1 HETATM 3 C C2 BOG . . . CA 4 6.695 29.46 30.534 1 82.9 ? C2 BOG 409 C 1 HETATM 4 O O2 BOG . . . CA 4 7.125 30.824 30.613 1 81.12 ? O2 BOG 409 C 1 HETATM 5 C C3 BOG . . . CA 4 6.224 28.944 31.896 1 85.29 ? C3 BOG 409 C 1 HETATM 6 O O3 BOG . . . CA 4 5.153 29.747 32.406 1 80.22 ? O3 BOG 409 C 1 HETATM 7 C C4 BOG . . . CA 4 5.814 27.467 31.811 1 87.97 ? C4 BOG 409 C 1 HETATM 8 O O4 BOG . . . CA 4 5.625 26.959 33.142 1 90.74 ? O4 BOG 409 C 1 HETATM 9 C C5 BOG . . . CA 4 6.869 26.625 31.064 1 88.18 ? C5 BOG 409 C 1 HETATM 10 O O5 BOG . . . CA 4 7.273 27.256 29.832 1 83.59 ? O5 BOG 409 C 1 HETATM 11 C C6 BOG . . . CA 4 6.408 25.188 30.798 1 87.89 ? C6 BOG 409 C 1 HETATM 12 O O6 BOG . . . CA 4 7.286 24.257 31.455 1 81.52 ? O6 BOG 409 C 1 HETATM 13 C C1' BOG . . . CA 4 9.923 28.946 29.081 1 71.37 ? C1' BOG 409 C 1 HETATM 14 C C2' BOG . . . CA 4 10.659 29.854 28.104 1 68.06 ? C2' BOG 409 C 1 HETATM 15 C C3' BOG . . . CA 4 12.103 29.387 27.935 1 64.76 ? C3' BOG 409 C 1 HETATM 16 C C4' BOG . . . CA 4 12.339 28.703 26.59 1 64.47 ? C4' BOG 409 C 1 HETATM 17 C C5' BOG . . . CA 4 13.754 28.139 26.466 1 62.36 ? C5' BOG 409 C 1 HETATM 18 C C6' BOG . . . CA 4 14.774 29.198 26.046 1 62.88 ? C6' BOG 409 C 1 HETATM 19 C C7' BOG . . . CA 4 15.705 28.711 24.932 1 62.49 ? C7' BOG 409 C 1 HETATM 20 C C8' BOG . . . CA 4 16.957 29.566 24.85 1 61.06 ? C8' BOG 409 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #