data_4EZH
#
_model_server_result.job_id            HnaFQCVyNEeikGdQ2NS9oQ 
_model_server_result.datetime_utc      '2024-11-25 03:32:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ezh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1701}' 
#
_entry.id    4EZH 
#
_exptl.entry_id    4EZH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4EZH 
_cell.length_a            83.682 
_cell.length_b            102.413 
_cell.length_c            143.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EZH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K 1 1 
B,D,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C ARG 3 C ARG 26 1_555 C N M3L 4 C M3L 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? 
covale ? covale2 C C M3L 4 C M3L 27 1_555 C N SER 5 C SER 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.287 ? 
covale ? covale3 D C ARG 3 D ARG 26 1_555 D N M3L 4 D M3L 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? 
covale ? covale4 D C M3L 4 D M3L 27 1_555 D N SER 5 D SER 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
metalc ? metalc1 A SG CYS 418 A CYS 1575 1_555 F ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
metalc ? metalc2 B NE2 HIS 313 B HIS 1470 1_555 H NI NI . B NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc3 A NE2 HIS 313 A HIS 1470 1_555 E NI NI . A NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc4 B OE2 GLU 235 B GLU 1392 1_555 H NI NI . B NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc5 E NI NI . A NI 1701 1_555 G O2' OGA . A OGA 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc6 A OE2 GLU 235 A GLU 1392 1_555 E NI NI . A NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc7 H NI NI . B NI 1701 1_555 J O2 OGA . B OGA 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc8 H NI NI . B NI 1701 1_555 J O2' OGA . B OGA 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc9 A NE2 HIS 233 A HIS 1390 1_555 E NI NI . A NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc10 B NE2 HIS 233 B HIS 1390 1_555 H NI NI . B NI 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc11 E NI NI . A NI 1701 1_555 G O2 OGA . A OGA 1703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc12 H NI NI . B NI 1701 1_555 L O HOH . B HOH 1811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc13 B SG CYS 448 B CYS 1605 1_555 I ZN ZN . B ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc14 E NI NI . A NI 1701 1_555 K O HOH . A HOH 1813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc15 A SG CYS 448 A CYS 1605 1_555 F ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc16 B SG CYS 418 B CYS 1575 1_555 I ZN ZN . B ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc17 B SG CYS 421 B CYS 1578 1_555 I ZN ZN . B ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc18 A SG CYS 445 A CYS 1602 1_555 F ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc19 B SG CYS 445 B CYS 1602 1_555 I ZN ZN . B ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc20 A SG CYS 421 A CYS 1578 1_555 F ZN ZN . A ZN 1702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4EZH 
_atom_sites.fract_transf_matrix[1][1]    0.01195 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009764 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006983 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NI A 1 1701 1701 NI NI . 
F 4 ZN A 1 1702 1702 ZN ZN . 
G 5 OGA A 1 1703 1703 OGA OGA . 
H 3 NI B 1 1701 1701 NI NI . 
I 4 ZN B 1 1702 1702 ZN ZN . 
J 5 OGA B 1 1703 1703 OGA OGA . 
K 6 HOH A 1 1801 1801 HOH HOH . 
K 6 HOH A 2 1802 1802 HOH HOH . 
K 6 HOH A 3 1803 1803 HOH HOH . 
K 6 HOH A 4 1804 1804 HOH HOH . 
K 6 HOH A 5 1805 1805 HOH HOH . 
K 6 HOH A 6 1806 1806 HOH HOH . 
K 6 HOH A 7 1807 1807 HOH HOH . 
K 6 HOH A 8 1808 1808 HOH HOH . 
K 6 HOH A 9 1809 1809 HOH HOH . 
K 6 HOH A 10 1810 1810 HOH HOH . 
K 6 HOH A 11 1811 1812 HOH HOH . 
K 6 HOH A 12 1812 1813 HOH HOH . 
K 6 HOH A 13 1813 1814 HOH HOH . 
K 6 HOH A 14 1814 1815 HOH HOH . 
K 6 HOH A 15 1815 1816 HOH HOH . 
K 6 HOH A 16 1816 1817 HOH HOH . 
K 6 HOH A 17 1817 1818 HOH HOH . 
K 6 HOH A 18 1818 1820 HOH HOH . 
K 6 HOH A 19 1819 1821 HOH HOH . 
K 6 HOH A 20 1820 1822 HOH HOH . 
K 6 HOH A 21 1821 1823 HOH HOH . 
K 6 HOH A 22 1822 1824 HOH HOH . 
K 6 HOH A 23 1823 1825 HOH HOH . 
K 6 HOH A 24 1824 1826 HOH HOH . 
K 6 HOH A 25 1825 1827 HOH HOH . 
K 6 HOH A 26 1826 1829 HOH HOH . 
K 6 HOH A 27 1827 1831 HOH HOH . 
K 6 HOH A 28 1828 1832 HOH HOH . 
K 6 HOH A 29 1829 1833 HOH HOH . 
K 6 HOH A 30 1830 1834 HOH HOH . 
K 6 HOH A 31 1831 1835 HOH HOH . 
K 6 HOH A 32 1832 1837 HOH HOH . 
K 6 HOH A 33 1833 1838 HOH HOH . 
K 6 HOH A 34 1834 1839 HOH HOH . 
K 6 HOH A 35 1835 1840 HOH HOH . 
K 6 HOH A 36 1836 1842 HOH HOH . 
K 6 HOH A 37 1837 1844 HOH HOH . 
K 6 HOH A 38 1838 1847 HOH HOH . 
K 6 HOH A 39 1839 1848 HOH HOH . 
K 6 HOH A 40 1840 1849 HOH HOH . 
K 6 HOH A 41 1841 1850 HOH HOH . 
K 6 HOH A 42 1842 1851 HOH HOH . 
K 6 HOH A 43 1843 1852 HOH HOH . 
L 6 HOH B 1 1801 1853 HOH HOH . 
L 6 HOH B 2 1802 1801 HOH HOH . 
L 6 HOH B 3 1803 1802 HOH HOH . 
L 6 HOH B 4 1804 1803 HOH HOH . 
L 6 HOH B 5 1805 1804 HOH HOH . 
L 6 HOH B 6 1806 1805 HOH HOH . 
L 6 HOH B 7 1807 1806 HOH HOH . 
L 6 HOH B 8 1808 1808 HOH HOH . 
L 6 HOH B 9 1809 1809 HOH HOH . 
L 6 HOH B 10 1810 1810 HOH HOH . 
L 6 HOH B 11 1811 1811 HOH HOH . 
L 6 HOH B 12 1812 1812 HOH HOH . 
L 6 HOH B 13 1813 1813 HOH HOH . 
L 6 HOH B 14 1814 1814 HOH HOH . 
L 6 HOH B 15 1815 1815 HOH HOH . 
L 6 HOH B 16 1816 1817 HOH HOH . 
L 6 HOH B 17 1817 1818 HOH HOH . 
L 6 HOH B 18 1818 1819 HOH HOH . 
L 6 HOH B 19 1819 1821 HOH HOH . 
L 6 HOH B 20 1820 1823 HOH HOH . 
L 6 HOH B 21 1821 1824 HOH HOH . 
L 6 HOH B 22 1822 1825 HOH HOH . 
L 6 HOH B 23 1823 1828 HOH HOH . 
L 6 HOH B 24 1824 1829 HOH HOH . 
L 6 HOH B 25 1825 1830 HOH HOH . 
L 6 HOH B 26 1826 1831 HOH HOH . 
L 6 HOH B 27 1827 1833 HOH HOH . 
L 6 HOH B 28 1828 1834 HOH HOH . 
L 6 HOH B 29 1829 1835 HOH HOH . 
L 6 HOH B 30 1830 1836 HOH HOH . 
L 6 HOH B 31 1831 1837 HOH HOH . 
L 6 HOH B 32 1832 1838 HOH HOH . 
L 6 HOH B 33 1833 1839 HOH HOH . 
L 6 HOH B 34 1834 1840 HOH HOH . 
L 6 HOH B 35 1835 1841 HOH HOH . 
L 6 HOH B 36 1836 1842 HOH HOH . 
L 6 HOH B 37 1837 1843 HOH HOH . 
L 6 HOH B 38 1838 1844 HOH HOH . 
L 6 HOH B 39 1839 1847 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -36.463 
_atom_site.Cartn_y               1.229 
_atom_site.Cartn_z               -24.663 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.64 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           1701 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#