data_4F08 # _model_server_result.job_id Llisngbnl95AZprvsYLlvg _model_server_result.datetime_utc '2025-02-05 16:46:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 4F08 # _exptl.entry_id 4F08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.292 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(piperidin-4-yl)-1,6-dihydroimidazo[4,5-d]pyrrolo[2,3-b]pyridine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F08 _cell.length_a 110.923 _cell.length_b 110.923 _cell.length_c 70.732 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 176 A GLU 1006 1_555 A N PTR 177 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C PTR 177 A PTR 1007 1_555 A N PTR 178 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C PTR 178 A PTR 1008 1_555 A N LYS 179 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 B C GLU 176 B GLU 1006 1_555 B N PTR 177 B PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 B C PTR 177 B PTR 1007 1_555 B N PTR 178 B PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 B C PTR 178 B PTR 1008 1_555 B N LYS 179 B LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C13 H15 N5' _chem_comp.formula_weight 241.292 _chem_comp.id 1RS _chem_comp.mon_nstd_flag . _chem_comp.name 1-(piperidin-4-yl)-1,6-dihydroimidazo[4,5-d]pyrrolo[2,3-b]pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C4 1RS sing 1 n y N3 C2 1RS doub 2 n y C5 C4 1RS doub 3 n y C5 N6 1RS sing 4 n y C4 C9 1RS sing 5 n y C2 N10 1RS sing 6 n y N6 C7 1RS doub 7 n y C9 N10 1RS sing 8 n y C9 C8 1RS doub 9 n y N10 C11 1RS sing 10 n n C7 C8 1RS sing 11 n y C7 N19 1RS sing 12 n y C8 C17 1RS sing 13 n y C11 C12 1RS sing 14 n n C11 C16 1RS sing 15 n n C12 C13 1RS sing 16 n n N19 C18 1RS sing 17 n y C13 N14 1RS sing 18 n n C17 C18 1RS doub 19 n y C16 C15 1RS sing 20 n n N14 C15 1RS sing 21 n n C2 H1 1RS sing 22 n n C5 H2 1RS sing 23 n n C11 H4 1RS sing 24 n n C12 H5 1RS sing 25 n n C12 H6 1RS sing 26 n n C13 H7 1RS sing 27 n n C13 H8 1RS sing 28 n n N14 H9 1RS sing 29 n n C15 H11 1RS sing 30 n n C15 H12 1RS sing 31 n n C16 H13 1RS sing 32 n n C16 H14 1RS sing 33 n n C17 H15 1RS sing 34 n n C18 H16 1RS sing 35 n n N19 H3 1RS sing 36 n n # _atom_sites.entry_id 4F08 _atom_sites.fract_transf_matrix[1][1] 0.009015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1RS A 1 1201 1 1RS ZZZ . D 2 1RS B 1 1201 1 1RS ZZZ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 1RS . . . C 2 10.389 -53.791 -23.271 1 20 ? C2 1RS 1201 A 1 HETATM 2 N N3 1RS . . . C 2 11.098 -53.044 -24.035 1 20 ? N3 1RS 1201 A 1 HETATM 3 C C4 1RS . . . C 2 11.22 -51.842 -23.472 1 20 ? C4 1RS 1201 A 1 HETATM 4 C C5 1RS . . . C 2 11.872 -50.694 -23.873 1 20 ? C5 1RS 1201 A 1 HETATM 5 N N6 1RS . . . C 2 11.845 -49.635 -23.133 1 20 ? N6 1RS 1201 A 1 HETATM 6 C C7 1RS . . . C 2 11.205 -49.586 -21.989 1 20 ? C7 1RS 1201 A 1 HETATM 7 C C8 1RS . . . C 2 10.518 -50.697 -21.509 1 20 ? C8 1RS 1201 A 1 HETATM 8 C C9 1RS . . . C 2 10.521 -51.867 -22.265 1 20 ? C9 1RS 1201 A 1 HETATM 9 N N10 1RS . . . C 2 10.002 -53.123 -22.172 1 20 ? N10 1RS 1201 A 1 HETATM 10 C C11 1RS . . . C 2 9.196 -53.745 -21.137 1 20 ? C11 1RS 1201 A 1 HETATM 11 C C12 1RS . . . C 2 7.716 -53.435 -21.133 1 20 ? C12 1RS 1201 A 1 HETATM 12 C C13 1RS . . . C 2 7.083 -54.568 -20.338 1 20 ? C13 1RS 1201 A 1 HETATM 13 N N14 1RS . . . C 2 7.648 -54.627 -18.993 1 20 ? N14 1RS 1201 A 1 HETATM 14 C C15 1RS . . . C 2 9.091 -54.846 -18.987 1 20 ? C15 1RS 1201 A 1 HETATM 15 C C16 1RS . . . C 2 9.758 -53.704 -19.733 1 20 ? C16 1RS 1201 A 1 HETATM 16 C C17 1RS . . . C 2 9.944 -50.283 -20.242 1 20 ? C17 1RS 1201 A 1 HETATM 17 C C18 1RS . . . C 2 10.297 -49.014 -20.049 1 20 ? C18 1RS 1201 A 1 HETATM 18 N N19 1RS . . . C 2 11.055 -48.585 -21.083 1 20 ? N19 1RS 1201 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #