data_4F08
#
_model_server_result.job_id            8QLrI5yE39WqBBU8L-Nniw 
_model_server_result.datetime_utc      '2025-06-22 04:06:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4f08 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1201}' 
#
_entry.id    4F08 
#
_exptl.entry_id    4F08 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              241.292 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(piperidin-4-yl)-1,6-dihydroimidazo[4,5-d]pyrrolo[2,3-b]pyridine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4F08 
_cell.length_a            110.923 
_cell.length_b            110.923 
_cell.length_c            70.732 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4F08 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 176 A GLU 1006 1_555 A N PTR 177 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C PTR 177 A PTR 1007 1_555 A N PTR 178 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C PTR 178 A PTR 1008 1_555 A N LYS 179 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale4 B C GLU 176 B GLU 1006 1_555 B N PTR 177 B PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 B C PTR 177 B PTR 1007 1_555 B N PTR 178 B PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 B C PTR 178 B PTR 1008 1_555 B N LYS 179 B LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C13 H15 N5' 
_chem_comp.formula_weight    241.292 
_chem_comp.id                1RS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(piperidin-4-yl)-1,6-dihydroimidazo[4,5-d]pyrrolo[2,3-b]pyridine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C4 1RS sing 1 n y 
N3 C2 1RS doub 2 n y 
C5 C4 1RS doub 3 n y 
C5 N6 1RS sing 4 n y 
C4 C9 1RS sing 5 n y 
C2 N10 1RS sing 6 n y 
N6 C7 1RS doub 7 n y 
C9 N10 1RS sing 8 n y 
C9 C8 1RS doub 9 n y 
N10 C11 1RS sing 10 n n 
C7 C8 1RS sing 11 n y 
C7 N19 1RS sing 12 n y 
C8 C17 1RS sing 13 n y 
C11 C12 1RS sing 14 n n 
C11 C16 1RS sing 15 n n 
C12 C13 1RS sing 16 n n 
N19 C18 1RS sing 17 n y 
C13 N14 1RS sing 18 n n 
C17 C18 1RS doub 19 n y 
C16 C15 1RS sing 20 n n 
N14 C15 1RS sing 21 n n 
C2 H1 1RS sing 22 n n 
C5 H2 1RS sing 23 n n 
C11 H4 1RS sing 24 n n 
C12 H5 1RS sing 25 n n 
C12 H6 1RS sing 26 n n 
C13 H7 1RS sing 27 n n 
C13 H8 1RS sing 28 n n 
N14 H9 1RS sing 29 n n 
C15 H11 1RS sing 30 n n 
C15 H12 1RS sing 31 n n 
C16 H13 1RS sing 32 n n 
C16 H14 1RS sing 33 n n 
C17 H15 1RS sing 34 n n 
C18 H16 1RS sing 35 n n 
N19 H3 1RS sing 36 n n 
#
_atom_sites.entry_id                     4F08 
_atom_sites.fract_transf_matrix[1][1]    0.009015 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009015 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014138 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1RS A 1 1201 1 1RS ZZZ . 
D 2 1RS B 1 1201 1 1RS ZZZ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 1RS . . . D 2 19.889 -54.143 19.907 1 20 ? C2 1RS 1201 B 1 
HETATM 2 N N3 1RS . . . D 2 19.44 -55.018 20.729 1 20 ? N3 1RS 1201 B 1 
HETATM 3 C C4 1RS . . . D 2 20.451 -55.8 21.135 1 20 ? C4 1RS 1201 B 1 
HETATM 4 C C5 1RS . . . D 2 20.521 -56.878 22.002 1 20 ? C5 1RS 1201 B 1 
HETATM 5 N N6 1RS . . . D 2 21.641 -57.482 22.234 1 20 ? N6 1RS 1201 B 1 
HETATM 6 C C7 1RS . . . D 2 22.762 -57.112 21.664 1 20 ? C7 1RS 1201 B 1 
HETATM 7 C C8 1RS . . . D 2 22.788 -56.04 20.775 1 20 ? C8 1RS 1201 B 1 
HETATM 8 C C9 1RS . . . D 2 21.606 -55.356 20.492 1 20 ? C9 1RS 1201 B 1 
HETATM 9 N N10 1RS . . . D 2 21.212 -54.302 19.718 1 20 ? N10 1RS 1201 B 1 
HETATM 10 C C11 1RS . . . D 2 21.978 -53.436 18.832 1 20 ? C11 1RS 1201 B 1 
HETATM 11 C C12 1RS . . . D 2 22.257 -53.984 17.448 1 20 ? C12 1RS 1201 B 1 
HETATM 12 C C13 1RS . . . D 2 22.676 -52.792 16.599 1 20 ? C13 1RS 1201 B 1 
HETATM 13 N N14 1RS . . . D 2 23.857 -52.17 17.181 1 20 ? N14 1RS 1201 B 1 
HETATM 14 C C15 1RS . . . D 2 23.606 -51.686 18.533 1 20 ? C15 1RS 1201 B 1 
HETATM 15 C C16 1RS . . . D 2 23.249 -52.867 19.419 1 20 ? C16 1RS 1201 B 1 
HETATM 16 C C17 1RS . . . D 2 24.171 -55.917 20.349 1 20 ? C17 1RS 1201 B 1 
HETATM 17 C C18 1RS . . . D 2 24.864 -56.869 20.978 1 20 ? C18 1RS 1201 B 1 
HETATM 18 N N19 1RS . . . D 2 24.032 -57.593 21.762 1 20 ? N19 1RS 1201 B 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           1298 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           18 
#