data_4F09 # _model_server_result.job_id Br6ROVch5bbAZVMBf5m3mQ _model_server_result.datetime_utc '2024-10-11 00:30:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 4F09 # _exptl.entry_id 4F09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 255.318 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-1-(piperidin-4-yl)-1,6-dihydroimidazo[4,5-d]pyrrolo[2,3-b]pyridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.17 _cell.angle_gamma 90 _cell.entry_id 4F09 _cell.length_a 44.44 _cell.length_b 69.49 _cell.length_c 50.23 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 176 A GLU 1006 1_555 A N PTR 177 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C PTR 177 A PTR 1007 1_555 A N PTR 178 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PTR 178 A PTR 1008 1_555 A N LYS 179 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? # _chem_comp.formula 'C14 H17 N5' _chem_comp.formula_weight 255.318 _chem_comp.id JAK _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-1-(piperidin-4-yl)-1,6-dihydroimidazo[4,5-d]pyrrolo[2,3-b]pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 JAK sing 173 n n C1 H1 JAK sing 174 n n C1 H1A JAK sing 175 n n C1 H1B JAK sing 176 n n C2 N10 JAK sing 177 n y N3 C2 JAK doub 178 n y N3 C4 JAK sing 179 n y C4 C9 JAK sing 180 n y C5 C4 JAK doub 181 n y C5 N6 JAK sing 182 n y C5 H5 JAK sing 183 n n N6 C7 JAK doub 184 n y C7 C8 JAK sing 185 n y C7 N19 JAK sing 186 n y C8 C17 JAK sing 187 n y C9 C8 JAK doub 188 n y C9 N10 JAK sing 189 n y N10 C11 JAK sing 190 n n C11 C12 JAK sing 191 n n C11 H11 JAK sing 192 n n C12 C13 JAK sing 193 n n C12 H12 JAK sing 194 n n C12 H12A JAK sing 195 n n C13 H13 JAK sing 196 n n C13 H13A JAK sing 197 n n N14 C13 JAK sing 198 n n N14 HN14 JAK sing 199 n n C15 N14 JAK sing 200 n n C15 H15 JAK sing 201 n n C15 H15A JAK sing 202 n n C16 C11 JAK sing 203 n n C16 C15 JAK sing 204 n n C16 H16 JAK sing 205 n n C16 H16A JAK sing 206 n n C17 C18 JAK doub 207 n y C17 H17 JAK sing 208 n n C18 H18 JAK sing 209 n n N19 C18 JAK sing 210 n y N19 H171 JAK sing 211 n n # _atom_sites.entry_id 4F09 _atom_sites.fract_transf_matrix[1][1] 0.022502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004443 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JAK A 1 1201 1 JAK ZZZ . C 3 HOH A 1 1301 1 HOH HOH . C 3 HOH A 2 1302 2 HOH HOH . C 3 HOH A 3 1303 3 HOH HOH . C 3 HOH A 4 1304 4 HOH HOH . C 3 HOH A 5 1305 5 HOH HOH . C 3 HOH A 6 1306 6 HOH HOH . C 3 HOH A 7 1307 7 HOH HOH . C 3 HOH A 8 1308 8 HOH HOH . C 3 HOH A 9 1309 9 HOH HOH . C 3 HOH A 10 1310 10 HOH HOH . C 3 HOH A 11 1311 11 HOH HOH . C 3 HOH A 12 1312 12 HOH HOH . C 3 HOH A 13 1313 13 HOH HOH . C 3 HOH A 14 1314 15 HOH HOH . C 3 HOH A 15 1315 16 HOH HOH . C 3 HOH A 16 1316 17 HOH HOH . C 3 HOH A 17 1317 18 HOH HOH . C 3 HOH A 18 1318 19 HOH HOH . C 3 HOH A 19 1319 20 HOH HOH . C 3 HOH A 20 1320 21 HOH HOH . C 3 HOH A 21 1321 22 HOH HOH . C 3 HOH A 22 1322 23 HOH HOH . C 3 HOH A 23 1323 24 HOH HOH . C 3 HOH A 24 1324 25 HOH HOH . C 3 HOH A 25 1325 26 HOH HOH . C 3 HOH A 26 1326 27 HOH HOH . C 3 HOH A 27 1327 28 HOH HOH . C 3 HOH A 28 1328 29 HOH HOH . C 3 HOH A 29 1329 30 HOH HOH . C 3 HOH A 30 1330 31 HOH HOH . C 3 HOH A 31 1331 32 HOH HOH . C 3 HOH A 32 1332 33 HOH HOH . C 3 HOH A 33 1333 34 HOH HOH . C 3 HOH A 34 1334 35 HOH HOH . C 3 HOH A 35 1335 36 HOH HOH . C 3 HOH A 36 1336 37 HOH HOH . C 3 HOH A 37 1337 38 HOH HOH . C 3 HOH A 38 1338 39 HOH HOH . C 3 HOH A 39 1339 40 HOH HOH . C 3 HOH A 40 1340 41 HOH HOH . C 3 HOH A 41 1341 42 HOH HOH . C 3 HOH A 42 1342 43 HOH HOH . C 3 HOH A 43 1343 44 HOH HOH . C 3 HOH A 44 1344 45 HOH HOH . C 3 HOH A 45 1345 46 HOH HOH . C 3 HOH A 46 1346 47 HOH HOH . C 3 HOH A 47 1347 48 HOH HOH . C 3 HOH A 48 1348 49 HOH HOH . C 3 HOH A 49 1349 51 HOH HOH . C 3 HOH A 50 1350 52 HOH HOH . C 3 HOH A 51 1351 53 HOH HOH . C 3 HOH A 52 1352 54 HOH HOH . C 3 HOH A 53 1353 55 HOH HOH . C 3 HOH A 54 1354 56 HOH HOH . C 3 HOH A 55 1355 57 HOH HOH . C 3 HOH A 56 1356 58 HOH HOH . C 3 HOH A 57 1357 59 HOH HOH . C 3 HOH A 58 1358 61 HOH HOH . C 3 HOH A 59 1359 62 HOH HOH . C 3 HOH A 60 1360 63 HOH HOH . C 3 HOH A 61 1361 64 HOH HOH . C 3 HOH A 62 1362 67 HOH HOH . C 3 HOH A 63 1363 68 HOH HOH . C 3 HOH A 64 1364 69 HOH HOH . C 3 HOH A 65 1365 70 HOH HOH . C 3 HOH A 66 1366 72 HOH HOH . C 3 HOH A 67 1367 73 HOH HOH . C 3 HOH A 68 1368 74 HOH HOH . C 3 HOH A 69 1369 75 HOH HOH . C 3 HOH A 70 1370 77 HOH HOH . C 3 HOH A 71 1371 78 HOH HOH . C 3 HOH A 72 1372 80 HOH HOH . C 3 HOH A 73 1373 81 HOH HOH . C 3 HOH A 74 1374 82 HOH HOH . C 3 HOH A 75 1375 84 HOH HOH . C 3 HOH A 76 1376 85 HOH HOH . C 3 HOH A 77 1377 87 HOH HOH . C 3 HOH A 78 1378 91 HOH HOH . C 3 HOH A 79 1379 92 HOH HOH . C 3 HOH A 80 1380 93 HOH HOH . C 3 HOH A 81 1381 94 HOH HOH . C 3 HOH A 82 1382 96 HOH HOH . C 3 HOH A 83 1383 97 HOH HOH . C 3 HOH A 84 1384 98 HOH HOH . C 3 HOH A 85 1385 99 HOH HOH . C 3 HOH A 86 1386 100 HOH HOH . C 3 HOH A 87 1387 103 HOH HOH . C 3 HOH A 88 1388 104 HOH HOH . C 3 HOH A 89 1389 106 HOH HOH . C 3 HOH A 90 1390 107 HOH HOH . C 3 HOH A 91 1391 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 JAK . . . B 2 16.931 6.318 12.44 1 20 ? C1 JAK 1201 A 1 HETATM 2 C C2 JAK . . . B 2 16.597 7.752 12.314 1 20 ? C2 JAK 1201 A 1 HETATM 3 N N3 JAK . . . B 2 17.313 8.724 12.767 1 20 ? N3 JAK 1201 A 1 HETATM 4 C C4 JAK . . . B 2 16.624 9.876 12.447 1 20 ? C4 JAK 1201 A 1 HETATM 5 C C5 JAK . . . B 2 16.893 11.201 12.747 1 20 ? C5 JAK 1201 A 1 HETATM 6 N N6 JAK . . . B 2 16.046 12.171 12.426 1 20 ? N6 JAK 1201 A 1 HETATM 7 C C7 JAK . . . B 2 14.923 11.822 11.792 1 20 ? C7 JAK 1201 A 1 HETATM 8 C C8 JAK . . . B 2 14.574 10.528 11.428 1 20 ? C8 JAK 1201 A 1 HETATM 9 C C9 JAK . . . B 2 15.48 9.524 11.785 1 20 ? C9 JAK 1201 A 1 HETATM 10 N N10 JAK . . . B 2 15.513 8.15 11.726 1 20 ? N10 JAK 1201 A 1 HETATM 11 C C11 JAK . . . B 2 14.506 7.217 11.218 1 20 ? C11 JAK 1201 A 1 HETATM 12 C C12 JAK . . . B 2 14.275 7.329 9.739 1 20 ? C12 JAK 1201 A 1 HETATM 13 C C13 JAK . . . B 2 13.405 6.181 9.355 1 20 ? C13 JAK 1201 A 1 HETATM 14 N N14 JAK . . . B 2 12.135 6.063 10.026 1 20 ? N14 JAK 1201 A 1 HETATM 15 C C15 JAK . . . B 2 12.239 6.255 11.464 1 20 ? C15 JAK 1201 A 1 HETATM 16 C C16 JAK . . . B 2 13.2 7.291 11.973 1 20 ? C16 JAK 1201 A 1 HETATM 17 C C17 JAK . . . B 2 13.308 10.63 10.768 1 20 ? C17 JAK 1201 A 1 HETATM 18 C C18 JAK . . . B 2 12.964 11.926 10.778 1 20 ? C18 JAK 1201 A 1 HETATM 19 N N19 JAK . . . B 2 13.92 12.65 11.399 1 20 ? N19 JAK 1201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 19 #