data_4F0Y # _model_server_result.job_id BeDTeAXR1d-AB7Obv6geGA _model_server_result.datetime_utc '2024-11-24 08:57:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f0y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 4F0Y # _exptl.entry_id 4F0Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 83.19 _cell.angle_beta 87.44 _cell.angle_gamma 72.65 _cell.entry_id 4F0Y _cell.length_a 37.963 _cell.length_b 44.018 _cell.length_c 46.576 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F0Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 135 A ASP 114 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 A OD1 ASP 135 A ASP 114 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 C MG MG . A MG 201 1_555 J O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc4 C MG MG . A MG 201 1_555 J O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc5 C MG MG . A MG 201 1_555 J O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc6 C MG MG . A MG 201 1_555 J O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc7 B OD1 ASP 135 B ASP 114 1_555 F MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc8 B O ASP 135 B ASP 114 1_555 F MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc9 F MG MG . B MG 201 1_555 K O HOH . B HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc10 F MG MG . B MG 201 1_555 K O HOH . B HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc11 F MG MG . B MG 201 1_555 K O HOH . B HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc12 F MG MG . B MG 201 1_555 K O HOH . B HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4F0Y _atom_sites.fract_transf_matrix[1][1] 0.026341 _atom_sites.fract_transf_matrix[1][2] -0.008231 _atom_sites.fract_transf_matrix[1][3] -0.000268 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023801 _atom_sites.fract_transf_matrix[2][3] -0.002645 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 201 1 MG MG . D 3 CL A 1 202 3 CL CL . E 4 GOL A 1 203 7 GOL GOL . F 2 MG B 1 201 2 MG MG . G 3 CL B 1 202 4 CL CL . H 3 CL B 1 203 5 CL CL . I 4 GOL B 1 204 6 GOL GOL . J 5 HOH A 1 301 4 HOH HOH . J 5 HOH A 2 302 6 HOH HOH . J 5 HOH A 3 303 7 HOH HOH . J 5 HOH A 4 304 8 HOH HOH . J 5 HOH A 5 305 9 HOH HOH . J 5 HOH A 6 306 12 HOH HOH . J 5 HOH A 7 307 15 HOH HOH . J 5 HOH A 8 308 17 HOH HOH . J 5 HOH A 9 309 18 HOH HOH . J 5 HOH A 10 310 20 HOH HOH . J 5 HOH A 11 311 23 HOH HOH . J 5 HOH A 12 312 24 HOH HOH . J 5 HOH A 13 313 25 HOH HOH . J 5 HOH A 14 314 28 HOH HOH . J 5 HOH A 15 315 31 HOH HOH . J 5 HOH A 16 316 32 HOH HOH . J 5 HOH A 17 317 36 HOH HOH . J 5 HOH A 18 318 37 HOH HOH . J 5 HOH A 19 319 42 HOH HOH . J 5 HOH A 20 320 43 HOH HOH . J 5 HOH A 21 321 46 HOH HOH . J 5 HOH A 22 322 48 HOH HOH . J 5 HOH A 23 323 50 HOH HOH . J 5 HOH A 24 324 53 HOH HOH . J 5 HOH A 25 325 54 HOH HOH . J 5 HOH A 26 326 55 HOH HOH . J 5 HOH A 27 327 58 HOH HOH . J 5 HOH A 28 328 60 HOH HOH . J 5 HOH A 29 329 64 HOH HOH . J 5 HOH A 30 330 73 HOH HOH . J 5 HOH A 31 331 74 HOH HOH . J 5 HOH A 32 332 79 HOH HOH . J 5 HOH A 33 333 85 HOH HOH . J 5 HOH A 34 334 89 HOH HOH . J 5 HOH A 35 335 90 HOH HOH . J 5 HOH A 36 336 91 HOH HOH . J 5 HOH A 37 337 94 HOH HOH . J 5 HOH A 38 338 97 HOH HOH . J 5 HOH A 39 339 115 HOH HOH . J 5 HOH A 40 340 128 HOH HOH . J 5 HOH A 41 341 134 HOH HOH . J 5 HOH A 42 342 135 HOH HOH . J 5 HOH A 43 343 136 HOH HOH . K 5 HOH B 1 301 1 HOH HOH . K 5 HOH B 2 302 2 HOH HOH . K 5 HOH B 3 303 3 HOH HOH . K 5 HOH B 4 304 5 HOH HOH . K 5 HOH B 5 305 11 HOH HOH . K 5 HOH B 6 306 13 HOH HOH . K 5 HOH B 7 307 14 HOH HOH . K 5 HOH B 8 308 16 HOH HOH . K 5 HOH B 9 309 21 HOH HOH . K 5 HOH B 10 310 26 HOH HOH . K 5 HOH B 11 311 29 HOH HOH . K 5 HOH B 12 312 33 HOH HOH . K 5 HOH B 13 313 34 HOH HOH . K 5 HOH B 14 314 38 HOH HOH . K 5 HOH B 15 315 39 HOH HOH . K 5 HOH B 16 316 40 HOH HOH . K 5 HOH B 17 317 45 HOH HOH . K 5 HOH B 18 318 49 HOH HOH . K 5 HOH B 19 319 52 HOH HOH . K 5 HOH B 20 320 56 HOH HOH . K 5 HOH B 21 321 65 HOH HOH . K 5 HOH B 22 322 66 HOH HOH . K 5 HOH B 23 323 72 HOH HOH . K 5 HOH B 24 324 81 HOH HOH . K 5 HOH B 25 325 92 HOH HOH . K 5 HOH B 26 326 98 HOH HOH . K 5 HOH B 27 327 104 HOH HOH . K 5 HOH B 28 328 105 HOH HOH . K 5 HOH B 29 329 108 HOH HOH . K 5 HOH B 30 330 111 HOH HOH . K 5 HOH B 31 331 119 HOH HOH . K 5 HOH B 32 332 120 HOH HOH . K 5 HOH B 33 333 121 HOH HOH . K 5 HOH B 34 334 123 HOH HOH . K 5 HOH B 35 335 126 HOH HOH . K 5 HOH B 36 336 129 HOH HOH . K 5 HOH B 37 337 130 HOH HOH . K 5 HOH B 38 338 131 HOH HOH . K 5 HOH B 39 339 132 HOH HOH . K 5 HOH B 40 340 133 HOH HOH . K 5 HOH B 41 341 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -5.979 16.16 2.553 1 69.99 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . E 4 -5.627 14.917 1.989 1 65.85 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . E 4 -7.433 16.139 3.02 1 73.57 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . E 4 -7.964 14.836 2.906 1 74.59 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . E 4 -7.496 16.589 4.476 1 73.15 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . E 4 -8.814 16.451 4.959 1 72.34 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #