data_4F1M
#
_model_server_result.job_id            Qw7RmI1coQhU-D2slFNP5g 
_model_server_result.datetime_utc      '2024-10-13 10:22:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4f1m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1301}' 
#
_entry.id    4F1M 
#
_exptl.entry_id    4F1M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4F1M 
_cell.length_a            42.283 
_cell.length_b            42.283 
_cell.length_c            332.847 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4F1M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OD2 
_struct_conn.ptnr1_label_comp_id            ASP 
_struct_conn.ptnr1_label_seq_id             149 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             ASP 
_struct_conn.ptnr1_auth_seq_id              1154 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            MG 
_struct_conn.ptnr2_label_comp_id            MG 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             MG 
_struct_conn.ptnr2_auth_seq_id              1303 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.483 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C11 H18 N5 O12 P3' 
_chem_comp.formula_weight    505.208 
_chem_comp.id                ACP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ACP doub 1 n n 
PG O2G ACP sing 2 n n 
PG O3G ACP sing 3 n n 
PG C3B ACP sing 4 n n 
O2G HOG2 ACP sing 5 n n 
O3G HOG3 ACP sing 6 n n 
PB O1B ACP doub 7 n n 
PB O2B ACP sing 8 n n 
PB C3B ACP sing 9 n n 
PB O3A ACP sing 10 n n 
O2B HOB2 ACP sing 11 n n 
C3B H3B1 ACP sing 12 n n 
C3B H3B2 ACP sing 13 n n 
PA O1A ACP doub 14 n n 
PA O2A ACP sing 15 n n 
PA O3A ACP sing 16 n n 
PA O5' ACP sing 17 n n 
O2A HOA2 ACP sing 18 n n 
O5' C5' ACP sing 19 n n 
C5' C4' ACP sing 20 n n 
C5' "H5'1" ACP sing 21 n n 
C5' "H5'2" ACP sing 22 n n 
C4' O4' ACP sing 23 n n 
C4' C3' ACP sing 24 n n 
C4' H4' ACP sing 25 n n 
O4' C1' ACP sing 26 n n 
C3' O3' ACP sing 27 n n 
C3' C2' ACP sing 28 n n 
C3' H3' ACP sing 29 n n 
O3' HO3' ACP sing 30 n n 
C2' O2' ACP sing 31 n n 
C2' C1' ACP sing 32 n n 
C2' H2' ACP sing 33 n n 
O2' HO2' ACP sing 34 n n 
C1' N9 ACP sing 35 n n 
C1' H1' ACP sing 36 n n 
N9 C8 ACP sing 37 n y 
N9 C4 ACP sing 38 n y 
C8 N7 ACP doub 39 n y 
C8 H8 ACP sing 40 n n 
N7 C5 ACP sing 41 n y 
C5 C6 ACP sing 42 n y 
C5 C4 ACP doub 43 n y 
C6 N6 ACP sing 44 n n 
C6 N1 ACP doub 45 n y 
N6 HN61 ACP sing 46 n n 
N6 HN62 ACP sing 47 n n 
N1 C2 ACP sing 48 n y 
C2 N3 ACP doub 49 n y 
C2 H2 ACP sing 50 n n 
N3 C4 ACP sing 51 n y 
#
_atom_sites.entry_id                     4F1M 
_atom_sites.fract_transf_matrix[1][1]    0.02365 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02365 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003004 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACP A 1 1301 1301 ACP ACP . 
C 3 BTB A 1 1302 1302 BTB BTB . 
D 4 MG A 1 1303 1 MG MG . 
E 5 HOH A 1 1401 1402 HOH HOH . 
E 5 HOH A 2 1402 1403 HOH HOH . 
E 5 HOH A 3 1403 1404 HOH HOH . 
E 5 HOH A 4 1404 1405 HOH HOH . 
E 5 HOH A 5 1405 1406 HOH HOH . 
E 5 HOH A 6 1406 1407 HOH HOH . 
E 5 HOH A 7 1407 1408 HOH HOH . 
E 5 HOH A 8 1408 1409 HOH HOH . 
E 5 HOH A 9 1409 1410 HOH HOH . 
E 5 HOH A 10 1410 1411 HOH HOH . 
E 5 HOH A 11 1411 1412 HOH HOH . 
E 5 HOH A 12 1412 1413 HOH HOH . 
E 5 HOH A 13 1413 1414 HOH HOH . 
E 5 HOH A 14 1414 1415 HOH HOH . 
E 5 HOH A 15 1415 1416 HOH HOH . 
E 5 HOH A 16 1416 1417 HOH HOH . 
E 5 HOH A 17 1417 1418 HOH HOH . 
E 5 HOH A 18 1418 1420 HOH HOH . 
E 5 HOH A 19 1419 1421 HOH HOH . 
E 5 HOH A 20 1420 1422 HOH HOH . 
E 5 HOH A 21 1421 1423 HOH HOH . 
E 5 HOH A 22 1422 1424 HOH HOH . 
E 5 HOH A 23 1423 1425 HOH HOH . 
E 5 HOH A 24 1424 1426 HOH HOH . 
E 5 HOH A 25 1425 1427 HOH HOH . 
E 5 HOH A 26 1426 1428 HOH HOH . 
E 5 HOH A 27 1427 1429 HOH HOH . 
E 5 HOH A 28 1428 1430 HOH HOH . 
E 5 HOH A 29 1429 1431 HOH HOH . 
E 5 HOH A 30 1430 1432 HOH HOH . 
E 5 HOH A 31 1431 1433 HOH HOH . 
E 5 HOH A 32 1432 1434 HOH HOH . 
E 5 HOH A 33 1433 1435 HOH HOH . 
E 5 HOH A 34 1434 1436 HOH HOH . 
E 5 HOH A 35 1435 1437 HOH HOH . 
E 5 HOH A 36 1436 1438 HOH HOH . 
E 5 HOH A 37 1437 1439 HOH HOH . 
E 5 HOH A 38 1438 1440 HOH HOH . 
E 5 HOH A 39 1439 1441 HOH HOH . 
E 5 HOH A 40 1440 1442 HOH HOH . 
E 5 HOH A 41 1441 1443 HOH HOH . 
E 5 HOH A 42 1442 1444 HOH HOH . 
E 5 HOH A 43 1443 1445 HOH HOH . 
E 5 HOH A 44 1444 1446 HOH HOH . 
E 5 HOH A 45 1445 1447 HOH HOH . 
E 5 HOH A 46 1446 1448 HOH HOH . 
E 5 HOH A 47 1447 1449 HOH HOH . 
E 5 HOH A 48 1448 1450 HOH HOH . 
E 5 HOH A 49 1449 1451 HOH HOH . 
E 5 HOH A 50 1450 1452 HOH HOH . 
E 5 HOH A 51 1451 1453 HOH HOH . 
E 5 HOH A 52 1452 1454 HOH HOH . 
E 5 HOH A 53 1453 1455 HOH HOH . 
E 5 HOH A 54 1454 1456 HOH HOH . 
E 5 HOH A 55 1455 1457 HOH HOH . 
E 5 HOH A 56 1456 1458 HOH HOH . 
E 5 HOH A 57 1457 1459 HOH HOH . 
E 5 HOH A 58 1458 1460 HOH HOH . 
E 5 HOH A 59 1459 1461 HOH HOH . 
E 5 HOH A 60 1460 1462 HOH HOH . 
E 5 HOH A 61 1461 1463 HOH HOH . 
E 5 HOH A 62 1462 1464 HOH HOH . 
E 5 HOH A 63 1463 1465 HOH HOH . 
E 5 HOH A 64 1464 1466 HOH HOH . 
E 5 HOH A 65 1465 1467 HOH HOH . 
E 5 HOH A 66 1466 1468 HOH HOH . 
E 5 HOH A 67 1467 1469 HOH HOH . 
E 5 HOH A 68 1468 1470 HOH HOH . 
E 5 HOH A 69 1469 1471 HOH HOH . 
E 5 HOH A 70 1470 1472 HOH HOH . 
E 5 HOH A 71 1471 1473 HOH HOH . 
E 5 HOH A 72 1472 1474 HOH HOH . 
E 5 HOH A 73 1473 1475 HOH HOH . 
E 5 HOH A 74 1474 1476 HOH HOH . 
E 5 HOH A 75 1475 1477 HOH HOH . 
E 5 HOH A 76 1476 1478 HOH HOH . 
E 5 HOH A 77 1477 1479 HOH HOH . 
E 5 HOH A 78 1478 1480 HOH HOH . 
E 5 HOH A 79 1479 1481 HOH HOH . 
E 5 HOH A 80 1480 1482 HOH HOH . 
E 5 HOH A 81 1481 1483 HOH HOH . 
E 5 HOH A 82 1482 1484 HOH HOH . 
E 5 HOH A 83 1483 1485 HOH HOH . 
E 5 HOH A 84 1484 1486 HOH HOH . 
E 5 HOH A 85 1485 1487 HOH HOH . 
E 5 HOH A 86 1486 1488 HOH HOH . 
E 5 HOH A 87 1487 1489 HOH HOH . 
E 5 HOH A 88 1488 1490 HOH HOH . 
E 5 HOH A 89 1489 1491 HOH HOH . 
E 5 HOH A 90 1490 1492 HOH HOH . 
E 5 HOH A 91 1491 1493 HOH HOH . 
E 5 HOH A 92 1492 1494 HOH HOH . 
E 5 HOH A 93 1493 1495 HOH HOH . 
E 5 HOH A 94 1494 1496 HOH HOH . 
E 5 HOH A 95 1495 1497 HOH HOH . 
E 5 HOH A 96 1496 1498 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ACP . . . B 2 10.201 4.507 -18.277 1 64.3 ? PG ACP 1301 A 1 
HETATM 2 O O1G ACP . . . B 2 10.416 5.164 -19.591 1 64.41 ? O1G ACP 1301 A 1 
HETATM 3 O O2G ACP . . . B 2 8.653 4.59 -17.805 1 64.8 ? O2G ACP 1301 A 1 
HETATM 4 O O3G ACP . . . B 2 11.036 5.238 -17.094 1 64.77 ? O3G ACP 1301 A 1 
HETATM 5 P PB ACP . . . B 2 11.883 2.404 -17.009 1 63.15 ? PB ACP 1301 A 1 
HETATM 6 O O1B ACP . . . B 2 13.128 3.128 -17.343 1 63.62 ? O1B ACP 1301 A 1 
HETATM 7 O O2B ACP . . . B 2 11.269 2.581 -15.675 1 62.96 ? O2B ACP 1301 A 1 
HETATM 8 C C3B ACP . . . B 2 10.639 2.748 -18.275 1 63.71 ? C3B ACP 1301 A 1 
HETATM 9 P PA ACP . . . B 2 13.326 0.073 -16.468 1 60.33 ? PA ACP 1301 A 1 
HETATM 10 O O1A ACP . . . B 2 13.138 -1.378 -16.671 1 59.91 ? O1A ACP 1301 A 1 
HETATM 11 O O2A ACP . . . B 2 13.451 0.606 -15.093 1 60.45 ? O2A ACP 1301 A 1 
HETATM 12 O O3A ACP . . . B 2 12.138 0.835 -17.239 1 62.11 ? O3A ACP 1301 A 1 
HETATM 13 O O5' ACP . . . B 2 14.614 0.54 -17.328 1 57.41 ? O5' ACP 1301 A 1 
HETATM 14 C C5' ACP . . . B 2 15.948 0.241 -16.885 1 51.54 ? C5' ACP 1301 A 1 
HETATM 15 C C4' ACP . . . B 2 16.648 -0.837 -17.744 1 47.76 ? C4' ACP 1301 A 1 
HETATM 16 O O4' ACP . . . B 2 16.936 -1.972 -16.887 1 46.13 ? O4' ACP 1301 A 1 
HETATM 17 C C3' ACP . . . B 2 15.776 -1.404 -18.864 1 46.17 ? C3' ACP 1301 A 1 
HETATM 18 O O3' ACP . . . B 2 15.92 -0.602 -20.041 1 45.68 ? O3' ACP 1301 A 1 
HETATM 19 C C2' ACP . . . B 2 16.377 -2.784 -19.086 1 44.81 ? C2' ACP 1301 A 1 
HETATM 20 O O2' ACP . . . B 2 17.491 -2.706 -19.984 1 45.61 ? O2' ACP 1301 A 1 
HETATM 21 C C1' ACP . . . B 2 16.868 -3.188 -17.69 1 43.66 ? C1' ACP 1301 A 1 
HETATM 22 N N9 ACP . . . B 2 15.905 -4.145 -17.068 1 41 ? N9 ACP 1301 A 1 
HETATM 23 C C8 ACP . . . B 2 14.941 -3.83 -16.201 1 39.71 ? C8 ACP 1301 A 1 
HETATM 24 N N7 ACP . . . B 2 14.274 -4.929 -15.854 1 38.96 ? N7 ACP 1301 A 1 
HETATM 25 C C5 ACP . . . B 2 14.816 -5.955 -16.498 1 38.75 ? C5 ACP 1301 A 1 
HETATM 26 C C6 ACP . . . B 2 14.548 -7.319 -16.533 1 38.4 ? C6 ACP 1301 A 1 
HETATM 27 N N6 ACP . . . B 2 13.561 -7.834 -15.806 1 37.93 ? N6 ACP 1301 A 1 
HETATM 28 N N1 ACP . . . B 2 15.304 -8.11 -17.312 1 38.09 ? N1 ACP 1301 A 1 
HETATM 29 C C2 ACP . . . B 2 16.29 -7.604 -18.043 1 38.15 ? C2 ACP 1301 A 1 
HETATM 30 N N3 ACP . . . B 2 16.571 -6.308 -18.031 1 38.32 ? N3 ACP 1301 A 1 
HETATM 31 C C4 ACP . . . B 2 15.854 -5.46 -17.272 1 39.4 ? C4 ACP 1301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           31 
#