data_4F1O # _model_server_result.job_id YiWenZZQ8GuczI88HCqhyA _model_server_result.datetime_utc '2024-11-24 01:24:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1301}' # _entry.id 4F1O # _exptl.entry_id 4F1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F1O _cell.length_a 42.323 _cell.length_b 42.323 _cell.length_c 332.678 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id ACP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ACP doub 1 n n PG O2G ACP sing 2 n n PG O3G ACP sing 3 n n PG C3B ACP sing 4 n n O2G HOG2 ACP sing 5 n n O3G HOG3 ACP sing 6 n n PB O1B ACP doub 7 n n PB O2B ACP sing 8 n n PB C3B ACP sing 9 n n PB O3A ACP sing 10 n n O2B HOB2 ACP sing 11 n n C3B H3B1 ACP sing 12 n n C3B H3B2 ACP sing 13 n n PA O1A ACP doub 14 n n PA O2A ACP sing 15 n n PA O3A ACP sing 16 n n PA O5' ACP sing 17 n n O2A HOA2 ACP sing 18 n n O5' C5' ACP sing 19 n n C5' C4' ACP sing 20 n n C5' "H5'1" ACP sing 21 n n C5' "H5'2" ACP sing 22 n n C4' O4' ACP sing 23 n n C4' C3' ACP sing 24 n n C4' H4' ACP sing 25 n n O4' C1' ACP sing 26 n n C3' O3' ACP sing 27 n n C3' C2' ACP sing 28 n n C3' H3' ACP sing 29 n n O3' HO3' ACP sing 30 n n C2' O2' ACP sing 31 n n C2' C1' ACP sing 32 n n C2' H2' ACP sing 33 n n O2' HO2' ACP sing 34 n n C1' N9 ACP sing 35 n n C1' H1' ACP sing 36 n n N9 C8 ACP sing 37 n y N9 C4 ACP sing 38 n y C8 N7 ACP doub 39 n y C8 H8 ACP sing 40 n n N7 C5 ACP sing 41 n y C5 C6 ACP sing 42 n y C5 C4 ACP doub 43 n y C6 N6 ACP sing 44 n n C6 N1 ACP doub 45 n y N6 HN61 ACP sing 46 n n N6 HN62 ACP sing 47 n n N1 C2 ACP sing 48 n y C2 N3 ACP doub 49 n y C2 H2 ACP sing 50 n n N3 C4 ACP sing 51 n y # _atom_sites.entry_id 4F1O _atom_sites.fract_transf_matrix[1][1] 0.023628 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACP A 1 1301 1303 ACP ACP . C 3 HOH A 1 1401 1 HOH HOH . C 3 HOH A 2 1402 2 HOH HOH . C 3 HOH A 3 1403 3 HOH HOH . C 3 HOH A 4 1404 4 HOH HOH . C 3 HOH A 5 1405 5 HOH HOH . C 3 HOH A 6 1406 6 HOH HOH . C 3 HOH A 7 1407 7 HOH HOH . C 3 HOH A 8 1408 8 HOH HOH . C 3 HOH A 9 1409 9 HOH HOH . C 3 HOH A 10 1410 10 HOH HOH . C 3 HOH A 11 1411 11 HOH HOH . C 3 HOH A 12 1412 12 HOH HOH . C 3 HOH A 13 1413 13 HOH HOH . C 3 HOH A 14 1414 14 HOH HOH . C 3 HOH A 15 1415 15 HOH HOH . C 3 HOH A 16 1416 16 HOH HOH . C 3 HOH A 17 1417 17 HOH HOH . C 3 HOH A 18 1418 18 HOH HOH . C 3 HOH A 19 1419 19 HOH HOH . C 3 HOH A 20 1420 20 HOH HOH . C 3 HOH A 21 1421 21 HOH HOH . C 3 HOH A 22 1422 22 HOH HOH . C 3 HOH A 23 1423 23 HOH HOH . C 3 HOH A 24 1424 24 HOH HOH . C 3 HOH A 25 1425 25 HOH HOH . C 3 HOH A 26 1426 26 HOH HOH . C 3 HOH A 27 1427 27 HOH HOH . C 3 HOH A 28 1428 28 HOH HOH . C 3 HOH A 29 1429 29 HOH HOH . C 3 HOH A 30 1430 30 HOH HOH . C 3 HOH A 31 1431 31 HOH HOH . C 3 HOH A 32 1432 32 HOH HOH . C 3 HOH A 33 1433 33 HOH HOH . C 3 HOH A 34 1434 34 HOH HOH . C 3 HOH A 35 1435 35 HOH HOH . C 3 HOH A 36 1436 36 HOH HOH . C 3 HOH A 37 1437 37 HOH HOH . C 3 HOH A 38 1438 38 HOH HOH . C 3 HOH A 39 1439 39 HOH HOH . C 3 HOH A 40 1440 40 HOH HOH . C 3 HOH A 41 1441 41 HOH HOH . C 3 HOH A 42 1442 42 HOH HOH . C 3 HOH A 43 1443 43 HOH HOH . C 3 HOH A 44 1444 44 HOH HOH . C 3 HOH A 45 1445 45 HOH HOH . C 3 HOH A 46 1446 46 HOH HOH . C 3 HOH A 47 1447 47 HOH HOH . C 3 HOH A 48 1448 48 HOH HOH . C 3 HOH A 49 1449 49 HOH HOH . C 3 HOH A 50 1450 50 HOH HOH . C 3 HOH A 51 1451 51 HOH HOH . C 3 HOH A 52 1452 52 HOH HOH . C 3 HOH A 53 1453 53 HOH HOH . C 3 HOH A 54 1454 54 HOH HOH . C 3 HOH A 55 1455 55 HOH HOH . C 3 HOH A 56 1456 56 HOH HOH . C 3 HOH A 57 1457 57 HOH HOH . C 3 HOH A 58 1458 58 HOH HOH . C 3 HOH A 59 1459 59 HOH HOH . C 3 HOH A 60 1460 60 HOH HOH . C 3 HOH A 61 1461 61 HOH HOH . C 3 HOH A 62 1462 62 HOH HOH . C 3 HOH A 63 1463 63 HOH HOH . C 3 HOH A 64 1464 64 HOH HOH . C 3 HOH A 65 1465 65 HOH HOH . C 3 HOH A 66 1466 66 HOH HOH . C 3 HOH A 67 1467 67 HOH HOH . C 3 HOH A 68 1468 68 HOH HOH . C 3 HOH A 69 1469 69 HOH HOH . C 3 HOH A 70 1470 70 HOH HOH . C 3 HOH A 71 1471 71 HOH HOH . C 3 HOH A 72 1472 72 HOH HOH . C 3 HOH A 73 1473 73 HOH HOH . C 3 HOH A 74 1474 74 HOH HOH . C 3 HOH A 75 1475 75 HOH HOH . C 3 HOH A 76 1476 76 HOH HOH . C 3 HOH A 77 1477 77 HOH HOH . C 3 HOH A 78 1478 78 HOH HOH . C 3 HOH A 79 1479 79 HOH HOH . C 3 HOH A 80 1480 80 HOH HOH . C 3 HOH A 81 1481 81 HOH HOH . C 3 HOH A 82 1482 82 HOH HOH . C 3 HOH A 83 1483 83 HOH HOH . C 3 HOH A 84 1484 84 HOH HOH . C 3 HOH A 85 1485 85 HOH HOH . C 3 HOH A 86 1486 86 HOH HOH . C 3 HOH A 87 1487 87 HOH HOH . C 3 HOH A 88 1488 88 HOH HOH . C 3 HOH A 89 1489 89 HOH HOH . C 3 HOH A 90 1490 90 HOH HOH . C 3 HOH A 91 1491 91 HOH HOH . C 3 HOH A 92 1492 92 HOH HOH . C 3 HOH A 93 1493 93 HOH HOH . C 3 HOH A 94 1494 94 HOH HOH . C 3 HOH A 95 1495 95 HOH HOH . C 3 HOH A 96 1496 96 HOH HOH . C 3 HOH A 97 1497 97 HOH HOH . C 3 HOH A 98 1498 98 HOH HOH . C 3 HOH A 99 1499 99 HOH HOH . C 3 HOH A 100 1500 100 HOH HOH . C 3 HOH A 101 1501 101 HOH HOH . C 3 HOH A 102 1502 102 HOH HOH . C 3 HOH A 103 1503 103 HOH HOH . C 3 HOH A 104 1504 104 HOH HOH . C 3 HOH A 105 1505 105 HOH HOH . C 3 HOH A 106 1506 106 HOH HOH . C 3 HOH A 107 1507 107 HOH HOH . C 3 HOH A 108 1508 108 HOH HOH . C 3 HOH A 109 1509 109 HOH HOH . C 3 HOH A 110 1510 110 HOH HOH . C 3 HOH A 111 1511 111 HOH HOH . C 3 HOH A 112 1512 112 HOH HOH . C 3 HOH A 113 1513 113 HOH HOH . C 3 HOH A 114 1514 114 HOH HOH . C 3 HOH A 115 1515 115 HOH HOH . C 3 HOH A 116 1516 116 HOH HOH . C 3 HOH A 117 1517 117 HOH HOH . C 3 HOH A 118 1518 118 HOH HOH . C 3 HOH A 119 1519 119 HOH HOH . C 3 HOH A 120 1520 120 HOH HOH . C 3 HOH A 121 1521 121 HOH HOH . C 3 HOH A 122 1522 122 HOH HOH . C 3 HOH A 123 1523 123 HOH HOH . C 3 HOH A 124 1524 124 HOH HOH . C 3 HOH A 125 1525 125 HOH HOH . C 3 HOH A 126 1526 126 HOH HOH . C 3 HOH A 127 1527 127 HOH HOH . C 3 HOH A 128 1528 128 HOH HOH . C 3 HOH A 129 1529 129 HOH HOH . C 3 HOH A 130 1530 130 HOH HOH . C 3 HOH A 131 1531 131 HOH HOH . C 3 HOH A 132 1532 132 HOH HOH . C 3 HOH A 133 1533 133 HOH HOH . C 3 HOH A 134 1534 134 HOH HOH . C 3 HOH A 135 1535 135 HOH HOH . C 3 HOH A 136 1536 136 HOH HOH . C 3 HOH A 137 1537 137 HOH HOH . C 3 HOH A 138 1538 138 HOH HOH . C 3 HOH A 139 1539 139 HOH HOH . C 3 HOH A 140 1540 141 HOH HOH . C 3 HOH A 141 1541 142 HOH HOH . C 3 HOH A 142 1542 143 HOH HOH . C 3 HOH A 143 1543 144 HOH HOH . C 3 HOH A 144 1544 146 HOH HOH . C 3 HOH A 145 1545 147 HOH HOH . C 3 HOH A 146 1546 148 HOH HOH . C 3 HOH A 147 1547 149 HOH HOH . C 3 HOH A 148 1548 150 HOH HOH . C 3 HOH A 149 1549 151 HOH HOH . C 3 HOH A 150 1550 152 HOH HOH . C 3 HOH A 151 1551 153 HOH HOH . C 3 HOH A 152 1552 154 HOH HOH . C 3 HOH A 153 1553 155 HOH HOH . C 3 HOH A 154 1554 156 HOH HOH . C 3 HOH A 155 1555 157 HOH HOH . C 3 HOH A 156 1556 158 HOH HOH . C 3 HOH A 157 1557 160 HOH HOH . C 3 HOH A 158 1558 161 HOH HOH . C 3 HOH A 159 1559 162 HOH HOH . C 3 HOH A 160 1560 163 HOH HOH . C 3 HOH A 161 1561 164 HOH HOH . C 3 HOH A 162 1562 165 HOH HOH . C 3 HOH A 163 1563 166 HOH HOH . C 3 HOH A 164 1564 167 HOH HOH . C 3 HOH A 165 1565 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ACP . . . B 2 -9.654 26.182 -20.294 1 91.21 ? PG ACP 1301 A 1 HETATM 2 O O1G ACP . . . B 2 -10.244 26.298 -21.652 1 89.37 ? O1G ACP 1301 A 1 HETATM 3 O O2G ACP . . . B 2 -10.445 27.084 -19.203 1 89.91 ? O2G ACP 1301 A 1 HETATM 4 O O3G ACP . . . B 2 -8.121 26.706 -20.259 1 90.95 ? O3G ACP 1301 A 1 HETATM 5 P PB ACP . . . B 2 -9.049 24.406 -17.973 1 92.97 ? PB ACP 1301 A 1 HETATM 6 O O1B ACP . . . B 2 -7.665 24.926 -17.937 1 92.71 ? O1B ACP 1301 A 1 HETATM 7 O O2B ACP . . . B 2 -10.07 24.987 -17.073 1 92.25 ? O2B ACP 1301 A 1 HETATM 8 C C3B ACP . . . B 2 -9.651 24.481 -19.677 1 91.83 ? C3B ACP 1301 A 1 HETATM 9 P PA ACP . . . B 2 -8.036 22.102 -16.677 1 86.71 ? PA ACP 1301 A 1 HETATM 10 O O1A ACP . . . B 2 -8.419 20.68 -16.546 1 85.74 ? O1A ACP 1301 A 1 HETATM 11 O O2A ACP . . . B 2 -7.946 22.944 -15.465 1 87.51 ? O2A ACP 1301 A 1 HETATM 12 O O3A ACP . . . B 2 -9.023 22.805 -17.74 1 90.19 ? O3A ACP 1301 A 1 HETATM 13 O O5' ACP . . . B 2 -6.622 22.162 -17.455 1 82.27 ? O5' ACP 1301 A 1 HETATM 14 C C5' ACP . . . B 2 -5.426 21.699 -16.811 1 74.17 ? C5' ACP 1301 A 1 HETATM 15 C C4' ACP . . . B 2 -4.431 20.997 -17.778 1 68.9 ? C4' ACP 1301 A 1 HETATM 16 O O4' ACP . . . B 2 -4.076 19.701 -17.203 1 65.59 ? O4' ACP 1301 A 1 HETATM 17 C C3' ACP . . . B 2 -4.953 20.738 -19.201 1 67.28 ? C3' ACP 1301 A 1 HETATM 18 O O3' ACP . . . B 2 -3.916 21.027 -20.147 1 67.32 ? O3' ACP 1301 A 1 HETATM 19 C C2' ACP . . . B 2 -5.312 19.253 -19.222 1 64.77 ? C2' ACP 1301 A 1 HETATM 20 O O2' ACP . . . B 2 -4.955 18.666 -20.479 1 64.83 ? O2' ACP 1301 A 1 HETATM 21 C C1' ACP . . . B 2 -4.462 18.63 -18.11 1 61.57 ? C1' ACP 1301 A 1 HETATM 22 N N9 ACP . . . B 2 -5.305 17.626 -17.396 1 56.58 ? N9 ACP 1301 A 1 HETATM 23 C C8 ACP . . . B 2 -6.25 17.895 -16.491 1 54.84 ? C8 ACP 1301 A 1 HETATM 24 N N7 ACP . . . B 2 -6.801 16.758 -16.068 1 52.9 ? N7 ACP 1301 A 1 HETATM 25 C C5 ACP . . . B 2 -6.206 15.756 -16.704 1 52.36 ? C5 ACP 1301 A 1 HETATM 26 C C6 ACP . . . B 2 -6.356 14.373 -16.676 1 51.34 ? C6 ACP 1301 A 1 HETATM 27 N N6 ACP . . . B 2 -7.258 13.807 -15.878 1 50.03 ? N6 ACP 1301 A 1 HETATM 28 N N1 ACP . . . B 2 -5.575 13.614 -17.465 1 49.72 ? N1 ACP 1301 A 1 HETATM 29 C C2 ACP . . . B 2 -4.674 14.172 -18.264 1 50.54 ? C2 ACP 1301 A 1 HETATM 30 N N3 ACP . . . B 2 -4.507 15.487 -18.315 1 51.84 ? N3 ACP 1301 A 1 HETATM 31 C C4 ACP . . . B 2 -5.254 16.304 -17.55 1 53.54 ? C4 ACP 1301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #