data_4F22 # _model_server_result.job_id 5zaAd58g1CMCfs4MeVGr7Q _model_server_result.datetime_utc '2024-11-25 23:40:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f22 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4F22 # _exptl.entry_id 4F22 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 213.23 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F22 _cell.length_a 47.657 _cell.length_b 49.028 _cell.length_c 136.639 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F22 _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -68.3195 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 203 A CYS 206 1_555 A SG CYS 258 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc1 A NE2 HIS 20 A HIS 23 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'C10 H15 N O4' _chem_comp.formula_weight 213.23 _chem_comp.id KAI _chem_comp.mon_nstd_flag . _chem_comp.name 3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms KAINATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CD KAI sing 173 n n N CA KAI sing 174 n n N HN1 KAI sing 175 n n CD CG KAI sing 176 n n CD HD1 KAI sing 177 n n CD HD2 KAI sing 178 n n CD1 CG2 KAI doub 179 n n CD1 HD11 KAI sing 180 n n CD1 HD12 KAI sing 181 n n CD2 CG2 KAI sing 182 n n CD2 HD21 KAI sing 183 n n CD2 HD22 KAI sing 184 n n CD2 HD23 KAI sing 185 n n CA CB KAI sing 186 n n CA C KAI sing 187 n n CA HA KAI sing 188 n n CB CB1 KAI sing 189 n n CB CG KAI sing 190 n n CB HB KAI sing 191 n n CB1 CG1 KAI sing 192 n n CB1 HB11 KAI sing 193 n n CB1 HB12 KAI sing 194 n n CG CG2 KAI sing 195 n n CG HG KAI sing 196 n n CG1 OD1 KAI sing 197 n n CG1 OD2 KAI doub 198 n n C O KAI doub 199 n n C OXT KAI sing 200 n n OD1 HOD1 KAI sing 201 n n OXT HXT KAI sing 202 n n # _atom_sites.entry_id 4F22 _atom_sites.fract_transf_matrix[1][1] 0.020983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KAI A 1 301 400 KAI KAI . C 3 ZN A 1 302 1 ZN ZN . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 12 HOH HOH . D 4 HOH A 13 413 13 HOH HOH . D 4 HOH A 14 414 15 HOH HOH . D 4 HOH A 15 415 16 HOH HOH . D 4 HOH A 16 416 17 HOH HOH . D 4 HOH A 17 417 18 HOH HOH . D 4 HOH A 18 418 19 HOH HOH . D 4 HOH A 19 419 20 HOH HOH . D 4 HOH A 20 420 22 HOH HOH . D 4 HOH A 21 421 23 HOH HOH . D 4 HOH A 22 422 24 HOH HOH . D 4 HOH A 23 423 25 HOH HOH . D 4 HOH A 24 424 26 HOH HOH . D 4 HOH A 25 425 27 HOH HOH . D 4 HOH A 26 426 28 HOH HOH . D 4 HOH A 27 427 29 HOH HOH . D 4 HOH A 28 428 30 HOH HOH . D 4 HOH A 29 429 31 HOH HOH . D 4 HOH A 30 430 32 HOH HOH . D 4 HOH A 31 431 33 HOH HOH . D 4 HOH A 32 432 34 HOH HOH . D 4 HOH A 33 433 35 HOH HOH . D 4 HOH A 34 434 36 HOH HOH . D 4 HOH A 35 435 37 HOH HOH . D 4 HOH A 36 436 38 HOH HOH . D 4 HOH A 37 437 39 HOH HOH . D 4 HOH A 38 438 40 HOH HOH . D 4 HOH A 39 439 41 HOH HOH . D 4 HOH A 40 440 42 HOH HOH . D 4 HOH A 41 441 43 HOH HOH . D 4 HOH A 42 442 44 HOH HOH . D 4 HOH A 43 443 45 HOH HOH . D 4 HOH A 44 444 46 HOH HOH . D 4 HOH A 45 445 47 HOH HOH . D 4 HOH A 46 446 48 HOH HOH . D 4 HOH A 47 447 49 HOH HOH . D 4 HOH A 48 448 50 HOH HOH . D 4 HOH A 49 449 51 HOH HOH . D 4 HOH A 50 450 52 HOH HOH . D 4 HOH A 51 451 53 HOH HOH . D 4 HOH A 52 452 54 HOH HOH . D 4 HOH A 53 453 55 HOH HOH . D 4 HOH A 54 454 56 HOH HOH . D 4 HOH A 55 455 57 HOH HOH . D 4 HOH A 56 456 58 HOH HOH . D 4 HOH A 57 457 59 HOH HOH . D 4 HOH A 58 458 60 HOH HOH . D 4 HOH A 59 459 61 HOH HOH . D 4 HOH A 60 460 62 HOH HOH . D 4 HOH A 61 461 63 HOH HOH . D 4 HOH A 62 462 64 HOH HOH . D 4 HOH A 63 463 65 HOH HOH . D 4 HOH A 64 464 66 HOH HOH . D 4 HOH A 65 465 67 HOH HOH . D 4 HOH A 66 466 68 HOH HOH . D 4 HOH A 67 467 69 HOH HOH . D 4 HOH A 68 468 70 HOH HOH . D 4 HOH A 69 469 71 HOH HOH . D 4 HOH A 70 470 72 HOH HOH . D 4 HOH A 71 471 73 HOH HOH . D 4 HOH A 72 472 74 HOH HOH . D 4 HOH A 73 473 75 HOH HOH . D 4 HOH A 74 474 76 HOH HOH . D 4 HOH A 75 475 77 HOH HOH . D 4 HOH A 76 476 78 HOH HOH . D 4 HOH A 77 477 79 HOH HOH . D 4 HOH A 78 478 80 HOH HOH . D 4 HOH A 79 479 81 HOH HOH . D 4 HOH A 80 480 82 HOH HOH . D 4 HOH A 81 481 83 HOH HOH . D 4 HOH A 82 482 84 HOH HOH . D 4 HOH A 83 483 85 HOH HOH . D 4 HOH A 84 484 86 HOH HOH . D 4 HOH A 85 485 87 HOH HOH . D 4 HOH A 86 486 88 HOH HOH . D 4 HOH A 87 487 89 HOH HOH . D 4 HOH A 88 488 90 HOH HOH . D 4 HOH A 89 489 91 HOH HOH . D 4 HOH A 90 490 93 HOH HOH . D 4 HOH A 91 491 94 HOH HOH . D 4 HOH A 92 492 95 HOH HOH . D 4 HOH A 93 493 96 HOH HOH . D 4 HOH A 94 494 97 HOH HOH . D 4 HOH A 95 495 98 HOH HOH . D 4 HOH A 96 496 99 HOH HOH . D 4 HOH A 97 497 100 HOH HOH . D 4 HOH A 98 498 101 HOH HOH . D 4 HOH A 99 499 102 HOH HOH . D 4 HOH A 100 500 103 HOH HOH . D 4 HOH A 101 501 104 HOH HOH . D 4 HOH A 102 502 105 HOH HOH . D 4 HOH A 103 503 106 HOH HOH . D 4 HOH A 104 504 107 HOH HOH . D 4 HOH A 105 505 108 HOH HOH . D 4 HOH A 106 506 109 HOH HOH . D 4 HOH A 107 507 110 HOH HOH . D 4 HOH A 108 508 111 HOH HOH . D 4 HOH A 109 509 112 HOH HOH . D 4 HOH A 110 510 113 HOH HOH . D 4 HOH A 111 511 114 HOH HOH . D 4 HOH A 112 512 115 HOH HOH . D 4 HOH A 113 513 116 HOH HOH . D 4 HOH A 114 514 117 HOH HOH . D 4 HOH A 115 515 118 HOH HOH . D 4 HOH A 116 516 119 HOH HOH . D 4 HOH A 117 517 120 HOH HOH . D 4 HOH A 118 518 122 HOH HOH . D 4 HOH A 119 519 123 HOH HOH . D 4 HOH A 120 520 124 HOH HOH . D 4 HOH A 121 521 125 HOH HOH . D 4 HOH A 122 522 126 HOH HOH . D 4 HOH A 123 523 127 HOH HOH . D 4 HOH A 124 524 128 HOH HOH . D 4 HOH A 125 525 129 HOH HOH . D 4 HOH A 126 526 131 HOH HOH . D 4 HOH A 127 527 134 HOH HOH . D 4 HOH A 128 528 135 HOH HOH . D 4 HOH A 129 529 136 HOH HOH . D 4 HOH A 130 530 138 HOH HOH . D 4 HOH A 131 531 139 HOH HOH . D 4 HOH A 132 532 140 HOH HOH . D 4 HOH A 133 533 141 HOH HOH . D 4 HOH A 134 534 142 HOH HOH . D 4 HOH A 135 535 143 HOH HOH . D 4 HOH A 136 536 144 HOH HOH . D 4 HOH A 137 537 145 HOH HOH . D 4 HOH A 138 538 147 HOH HOH . D 4 HOH A 139 539 148 HOH HOH . D 4 HOH A 140 540 149 HOH HOH . D 4 HOH A 141 541 150 HOH HOH . D 4 HOH A 142 542 151 HOH HOH . D 4 HOH A 143 543 152 HOH HOH . D 4 HOH A 144 544 153 HOH HOH . D 4 HOH A 145 545 155 HOH HOH . D 4 HOH A 146 546 156 HOH HOH . D 4 HOH A 147 547 157 HOH HOH . D 4 HOH A 148 548 158 HOH HOH . D 4 HOH A 149 549 159 HOH HOH . D 4 HOH A 150 550 160 HOH HOH . D 4 HOH A 151 551 161 HOH HOH . D 4 HOH A 152 552 162 HOH HOH . D 4 HOH A 153 553 165 HOH HOH . D 4 HOH A 154 554 166 HOH HOH . D 4 HOH A 155 555 167 HOH HOH . D 4 HOH A 156 556 170 HOH HOH . D 4 HOH A 157 557 171 HOH HOH . D 4 HOH A 158 558 174 HOH HOH . D 4 HOH A 159 559 175 HOH HOH . D 4 HOH A 160 560 176 HOH HOH . D 4 HOH A 161 561 177 HOH HOH . D 4 HOH A 162 562 179 HOH HOH . D 4 HOH A 163 563 180 HOH HOH . D 4 HOH A 164 564 182 HOH HOH . D 4 HOH A 165 565 184 HOH HOH . D 4 HOH A 166 566 185 HOH HOH . D 4 HOH A 167 567 187 HOH HOH . D 4 HOH A 168 568 188 HOH HOH . D 4 HOH A 169 569 190 HOH HOH . D 4 HOH A 170 570 191 HOH HOH . D 4 HOH A 171 571 194 HOH HOH . D 4 HOH A 172 572 195 HOH HOH . D 4 HOH A 173 573 197 HOH HOH . D 4 HOH A 174 574 198 HOH HOH . D 4 HOH A 175 575 199 HOH HOH . D 4 HOH A 176 576 200 HOH HOH . D 4 HOH A 177 577 202 HOH HOH . D 4 HOH A 178 578 203 HOH HOH . D 4 HOH A 179 579 205 HOH HOH . D 4 HOH A 180 580 211 HOH HOH . D 4 HOH A 181 581 213 HOH HOH . D 4 HOH A 182 582 216 HOH HOH . D 4 HOH A 183 583 217 HOH HOH . D 4 HOH A 184 584 219 HOH HOH . D 4 HOH A 185 585 220 HOH HOH . D 4 HOH A 186 586 221 HOH HOH . D 4 HOH A 187 587 222 HOH HOH . D 4 HOH A 188 588 224 HOH HOH . D 4 HOH A 189 589 225 HOH HOH . D 4 HOH A 190 590 226 HOH HOH . D 4 HOH A 191 591 229 HOH HOH . D 4 HOH A 192 592 230 HOH HOH . D 4 HOH A 193 593 231 HOH HOH . D 4 HOH A 194 594 232 HOH HOH . D 4 HOH A 195 595 234 HOH HOH . D 4 HOH A 196 596 235 HOH HOH . D 4 HOH A 197 597 236 HOH HOH . D 4 HOH A 198 598 237 HOH HOH . D 4 HOH A 199 599 240 HOH HOH . D 4 HOH A 200 600 245 HOH HOH . D 4 HOH A 201 601 254 HOH HOH . D 4 HOH A 202 602 256 HOH HOH . D 4 HOH A 203 603 257 HOH HOH . D 4 HOH A 204 604 258 HOH HOH . D 4 HOH A 205 605 263 HOH HOH . D 4 HOH A 206 606 265 HOH HOH . D 4 HOH A 207 607 266 HOH HOH . D 4 HOH A 208 608 270 HOH HOH . D 4 HOH A 209 609 272 HOH HOH . D 4 HOH A 210 610 273 HOH HOH . D 4 HOH A 211 611 276 HOH HOH . D 4 HOH A 212 612 277 HOH HOH . D 4 HOH A 213 613 284 HOH HOH . D 4 HOH A 214 614 287 HOH HOH . D 4 HOH A 215 615 288 HOH HOH . D 4 HOH A 216 616 290 HOH HOH . D 4 HOH A 217 617 291 HOH HOH . D 4 HOH A 218 618 294 HOH HOH . D 4 HOH A 219 619 297 HOH HOH . D 4 HOH A 220 620 299 HOH HOH . D 4 HOH A 221 621 303 HOH HOH . D 4 HOH A 222 622 304 HOH HOH . D 4 HOH A 223 623 309 HOH HOH . D 4 HOH A 224 624 310 HOH HOH . D 4 HOH A 225 625 311 HOH HOH . D 4 HOH A 226 626 312 HOH HOH . D 4 HOH A 227 627 313 HOH HOH . D 4 HOH A 228 628 314 HOH HOH . D 4 HOH A 229 629 315 HOH HOH . D 4 HOH A 230 630 316 HOH HOH . D 4 HOH A 231 631 317 HOH HOH . D 4 HOH A 232 632 318 HOH HOH . D 4 HOH A 233 633 320 HOH HOH . D 4 HOH A 234 634 322 HOH HOH . D 4 HOH A 235 635 323 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N KAI . . . B 2 -2.776 -22.587 -19.789 1 17.89 ? N KAI 301 A 1 HETATM 2 C CD KAI . . . B 2 -2.12 -22.983 -18.517 1 18.2 ? CD KAI 301 A 1 HETATM 3 C CD1 KAI . . . B 2 -1.729 -23.905 -15.949 1 21.26 ? CD1 KAI 301 A 1 HETATM 4 C CD2 KAI . . . B 2 -3.895 -22.641 -15.046 1 23.13 ? CD2 KAI 301 A 1 HETATM 5 C CA KAI . . . B 2 -4.205 -22.287 -19.539 1 18.58 ? CA KAI 301 A 1 HETATM 6 C CB KAI . . . B 2 -4.492 -22.928 -18.219 1 17.65 ? CB KAI 301 A 1 HETATM 7 C CB1 KAI . . . B 2 -4.746 -24.438 -18.38 1 17.18 ? CB1 KAI 301 A 1 HETATM 8 C CG KAI . . . B 2 -3.21 -22.617 -17.479 1 17.4 ? CG KAI 301 A 1 HETATM 9 C CG1 KAI . . . B 2 -6.175 -24.928 -18.67 1 26.07 ? CG1 KAI 301 A 1 HETATM 10 C CG2 KAI . . . B 2 -3.144 -23.391 -16.173 1 22.7 ? CG2 KAI 301 A 1 HETATM 11 C C KAI . . . B 2 -4.529 -20.792 -19.598 1 20.42 ? C KAI 301 A 1 HETATM 12 O O KAI . . . B 2 -3.751 -20.01 -20.181 1 20.15 ? O KAI 301 A 1 HETATM 13 O OD1 KAI . . . B 2 -6.417 -26.161 -18.867 1 23.5 ? OD1 KAI 301 A 1 HETATM 14 O OD2 KAI . . . B 2 -7.107 -24.103 -18.763 1 30.18 ? OD2 KAI 301 A 1 HETATM 15 O OXT KAI . . . B 2 -5.609 -20.302 -19.18 1 20.15 ? OXT KAI 301 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #