data_4F2A # _model_server_result.job_id fF_OdrQN-_50TVU_kmUBkw _model_server_result.datetime_utc '2024-11-23 19:23:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":606}' # _entry.id 4F2A # _exptl.entry_id 4F2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 651.1 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTERYL OLEATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F2A _cell.length_a 68.772 _cell.length_b 69.915 _cell.length_c 187.145 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 601 NAG 2 n B NAG 2 B 2 NAG A 602 NAG 2 n B MAN 3 B 3 MAN A 603 MAN 2 n B FUC 4 B 4 FUC A 606 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 143 A CYS 143 1_555 A SG CYS 184 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 396 A ASN 396 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale3 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C45 H78 O2' _chem_comp.formula_weight 651.1 _chem_comp.id 2OB _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTERYL OLEATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(3BETA,9BETA,14BETA,17ALPHA)-CHOLEST-5-EN-3-YL (9Z)-OCTADEC-9-ENOATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C48 2OB doub 62 n n C48 C47 2OB sing 63 n n C48 O1 2OB sing 64 n n O1 C3 2OB sing 65 n n C3 C4 2OB sing 66 n n C3 C2 2OB sing 67 n n C3 H3 2OB sing 68 n n C2 C1 2OB sing 69 n n C2 H21 2OB sing 70 n n C2 H22 2OB sing 71 n n C4 C5 2OB sing 72 n n C4 H41 2OB sing 73 n n C4 H42 2OB sing 74 n n C5 C6 2OB doub 75 n n C5 C10 2OB sing 76 n n C10 C1 2OB sing 77 n n C10 C19 2OB sing 78 n n C10 C9 2OB sing 79 n n C9 C8 2OB sing 80 n n C9 C11 2OB sing 81 n n C9 H9 2OB sing 82 n n C11 C12 2OB sing 83 n n C11 H111 2OB sing 84 n n C11 H112 2OB sing 85 n n C12 C13 2OB sing 86 n n C12 H121 2OB sing 87 n n C12 H122 2OB sing 88 n n C13 C14 2OB sing 89 n n C13 C18 2OB sing 90 n n C13 C17 2OB sing 91 n n C18 H181 2OB sing 92 n n C18 H182 2OB sing 93 n n C18 H183 2OB sing 94 n n C17 C16 2OB sing 95 n n C17 C20 2OB sing 96 n n C17 H17 2OB sing 97 n n C20 C21 2OB sing 98 n n C20 C22 2OB sing 99 n n C20 H20 2OB sing 100 n n C22 C23 2OB sing 101 n n C22 H221 2OB sing 102 n n C22 H222 2OB sing 103 n n C23 C24 2OB sing 104 n n C23 H231 2OB sing 105 n n C23 H232 2OB sing 106 n n C24 C25 2OB sing 107 n n C24 H241 2OB sing 108 n n C24 H242 2OB sing 109 n n C25 C27 2OB sing 110 n n C25 C26 2OB sing 111 n n C25 H25 2OB sing 112 n n C27 H271 2OB sing 113 n n C27 H272 2OB sing 114 n n C27 H273 2OB sing 115 n n C26 H261 2OB sing 116 n n C26 H262 2OB sing 117 n n C26 H263 2OB sing 118 n n C21 H211 2OB sing 119 n n C21 H212 2OB sing 120 n n C21 H213 2OB sing 121 n n C16 C15 2OB sing 122 n n C16 H161 2OB sing 123 n n C16 H162 2OB sing 124 n n C15 C14 2OB sing 125 n n C15 H151 2OB sing 126 n n C15 H152 2OB sing 127 n n C14 C8 2OB sing 128 n n C14 H14 2OB sing 129 n n C8 C7 2OB sing 130 n n C8 H8 2OB sing 131 n n C7 C6 2OB sing 132 n n C7 H71 2OB sing 133 n n C7 H72 2OB sing 134 n n C6 H6 2OB sing 135 n n C19 H191 2OB sing 136 n n C19 H192 2OB sing 137 n n C19 H193 2OB sing 138 n n C1 H11 2OB sing 139 n n C1 H12 2OB sing 140 n n C47 C46 2OB sing 141 n n C47 H471 2OB sing 142 n n C47 H472 2OB sing 143 n n C46 C45 2OB sing 144 n n C46 H461 2OB sing 145 n n C46 H462 2OB sing 146 n n C45 C44 2OB sing 147 n n C45 H451 2OB sing 148 n n C45 H452 2OB sing 149 n n C44 C43 2OB sing 150 n n C44 H441 2OB sing 151 n n C44 H442 2OB sing 152 n n C43 C42 2OB sing 153 n n C43 H431 2OB sing 154 n n C43 H432 2OB sing 155 n n C42 C41 2OB sing 156 n n C42 H421 2OB sing 157 n n C42 H422 2OB sing 158 n n C41 C40 2OB sing 159 n n C41 H411 2OB sing 160 n n C41 H412 2OB sing 161 n n C40 C39 2OB doub 162 z n C40 H40 2OB sing 163 n n C39 C38 2OB sing 164 n n C39 H39 2OB sing 165 n n C38 C37 2OB sing 166 n n C38 H381 2OB sing 167 n n C38 H382 2OB sing 168 n n C37 C36 2OB sing 169 n n C37 H371 2OB sing 170 n n C37 H372 2OB sing 171 n n C36 C35 2OB sing 172 n n C36 H361 2OB sing 173 n n C36 H362 2OB sing 174 n n C35 C34 2OB sing 175 n n C35 H351 2OB sing 176 n n C35 H352 2OB sing 177 n n C34 C33 2OB sing 178 n n C34 H341 2OB sing 179 n n C34 H342 2OB sing 180 n n C33 C32 2OB sing 181 n n C33 H331 2OB sing 182 n n C33 H332 2OB sing 183 n n C32 C31 2OB sing 184 n n C32 H321 2OB sing 185 n n C32 H322 2OB sing 186 n n C31 H311 2OB sing 187 n n C31 H312 2OB sing 188 n n C31 H313 2OB sing 189 n n # _atom_sites.entry_id 4F2A _atom_sites.fract_transf_matrix[1][1] 0.014541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 2OB A 1 605 485 2OB 2OB . D 3 2OB A 1 606 486 2OB 2OB . E 4 PCW A 1 607 488 PCW PC8 . F 5 PGE A 1 608 493 PGE PGE . G 6 CL A 1 609 494 CL CL . H 7 0SF A 1 610 4000 0SF 0SF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 2OB . . . D 3 -22.87 10.245 -16.755 1 77.8 ? O2 2OB 606 A 1 HETATM 2 C C48 2OB . . . D 3 -21.831 10.419 -16.122 1 76.76 ? C48 2OB 606 A 1 HETATM 3 O O1 2OB . . . D 3 -20.532 10.087 -16.704 1 75.42 ? O1 2OB 606 A 1 HETATM 4 C C3 2OB . . . D 3 -20.599 9.256 -17.871 1 72.89 ? C3 2OB 606 A 1 HETATM 5 C C2 2OB . . . D 3 -20.502 10.162 -19.099 1 70.14 ? C2 2OB 606 A 1 HETATM 6 C C4 2OB . . . D 3 -19.474 8.216 -17.85 1 71.54 ? C4 2OB 606 A 1 HETATM 7 C C5 2OB . . . D 3 -19.354 7.535 -19.204 1 69.01 ? C5 2OB 606 A 1 HETATM 8 C C10 2OB . . . D 3 -19.244 8.377 -20.484 1 70.03 ? C10 2OB 606 A 1 HETATM 9 C C9 2OB . . . D 3 -19.453 7.495 -21.753 1 65.96 ? C9 2OB 606 A 1 HETATM 10 C C11 2OB . . . D 3 -19.261 8.237 -23.097 1 61.83 ? C11 2OB 606 A 1 HETATM 11 C C12 2OB . . . D 3 -19.487 7.373 -24.343 1 62.28 ? C12 2OB 606 A 1 HETATM 12 C C13 2OB . . . D 3 -18.755 6.013 -24.296 1 62.78 ? C13 2OB 606 A 1 HETATM 13 C C18 2OB . . . D 3 -17.215 6.198 -24.42 1 64.11 ? C18 2OB 606 A 1 HETATM 14 C C17 2OB . . . D 3 -19.323 4.966 -25.283 1 58.86 ? C17 2OB 606 A 1 HETATM 15 C C20 2OB . . . D 3 -19.08 5.029 -26.817 1 58.56 ? C20 2OB 606 A 1 HETATM 16 C C22 2OB . . . D 3 -20.188 4.363 -27.63 1 57.86 ? C22 2OB 606 A 1 HETATM 17 C C23 2OB . . . D 3 -20.002 2.871 -27.869 1 55.96 ? C23 2OB 606 A 1 HETATM 18 C C24 2OB . . . D 3 -21.282 2.272 -28.414 1 56.11 ? C24 2OB 606 A 1 HETATM 19 C C25 2OB . . . D 3 -21.056 2.007 -29.892 1 61.33 ? C25 2OB 606 A 1 HETATM 20 C C27 2OB . . . D 3 -21.346 0.552 -30.265 1 64.33 ? C27 2OB 606 A 1 HETATM 21 C C26 2OB . . . D 3 -21.782 3.029 -30.767 1 61.65 ? C26 2OB 606 A 1 HETATM 22 C C21 2OB . . . D 3 -18.975 6.425 -27.427 1 58.36 ? C21 2OB 606 A 1 HETATM 23 C C16 2OB . . . D 3 -19.067 3.597 -24.634 1 56.44 ? C16 2OB 606 A 1 HETATM 24 C C15 2OB . . . D 3 -18.931 3.823 -23.129 1 58.4 ? C15 2OB 606 A 1 HETATM 25 C C14 2OB . . . D 3 -19.169 5.322 -22.986 1 61.89 ? C14 2OB 606 A 1 HETATM 26 C C8 2OB . . . D 3 -18.849 6.061 -21.683 1 63.57 ? C8 2OB 606 A 1 HETATM 27 C C7 2OB . . . D 3 -19.4 5.312 -20.469 1 63.94 ? C7 2OB 606 A 1 HETATM 28 C C6 2OB . . . D 3 -19.369 6.18 -19.217 1 66.52 ? C6 2OB 606 A 1 HETATM 29 C C19 2OB . . . D 3 -17.873 9.092 -20.512 1 72.23 ? C19 2OB 606 A 1 HETATM 30 C C1 2OB . . . D 3 -20.393 9.4 -20.418 1 69.47 ? C1 2OB 606 A 1 HETATM 31 C C47 2OB . . . D 3 -21.879 10.944 -14.702 1 75.87 ? C47 2OB 606 A 1 HETATM 32 C C46 2OB . . . D 3 -22.456 12.345 -14.658 1 72.34 ? C46 2OB 606 A 1 HETATM 33 C C45 2OB . . . D 3 -22.555 12.817 -13.231 1 69.72 ? C45 2OB 606 A 1 HETATM 34 C C44 2OB . . . D 3 -23.8 13.675 -13.125 1 71.07 ? C44 2OB 606 A 1 HETATM 35 C C43 2OB . . . D 3 -23.853 14.437 -11.809 1 74.04 ? C43 2OB 606 A 1 HETATM 36 C C42 2OB . . . D 3 -23.119 15.761 -11.93 1 77.12 ? C42 2OB 606 A 1 HETATM 37 C C41 2OB . . . D 3 -24.129 16.891 -11.93 1 80.91 ? C41 2OB 606 A 1 HETATM 38 C C40 2OB . . . D 3 -24.224 17.511 -10.557 1 84.83 ? C40 2OB 606 A 1 HETATM 39 C C39 2OB . . . D 3 -25.304 18.17 -10.128 1 88.71 ? C39 2OB 606 A 1 HETATM 40 C C38 2OB . . . D 3 -26.554 18.353 -10.956 1 91.11 ? C38 2OB 606 A 1 HETATM 41 C C37 2OB . . . D 3 -27.446 19.409 -10.323 1 94.26 ? C37 2OB 606 A 1 HETATM 42 C C36 2OB . . . D 3 -28.496 19.832 -11.343 1 98.58 ? C36 2OB 606 A 1 HETATM 43 C C35 2OB . . . D 3 -29.249 21.09 -10.916 1 103.33 ? C35 2OB 606 A 1 HETATM 44 C C34 2OB . . . D 3 -30.679 20.793 -10.469 1 106.79 ? C34 2OB 606 A 1 HETATM 45 C C33 2OB . . . D 3 -31.642 20.685 -11.647 1 108.55 ? C33 2OB 606 A 1 HETATM 46 C C32 2OB . . . D 3 -32.669 19.591 -11.397 1 110.04 ? C32 2OB 606 A 1 HETATM 47 C C31 2OB . . . D 3 -34.038 20.178 -11.129 1 111.14 ? C31 2OB 606 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 47 #