data_4F2A # _model_server_result.job_id jLitbPK3pYcsz80cOYmYNw _model_server_result.datetime_utc '2024-11-23 19:41:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":607}' # _entry.id 4F2A # _exptl.entry_id 4F2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F2A _cell.length_a 68.772 _cell.length_b 69.915 _cell.length_c 187.145 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 601 NAG 2 n B NAG 2 B 2 NAG A 602 NAG 2 n B MAN 3 B 3 MAN A 603 MAN 2 n B FUC 4 B 4 FUC A 606 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 143 A CYS 143 1_555 A SG CYS 184 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 396 A ASN 396 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale3 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 501 n n C1 O3P PCW sing 502 n n C1 H11 PCW sing 503 n n C1 H12 PCW sing 504 n n C2 C3 PCW sing 505 n n C2 O2 PCW sing 506 n n C2 H2 PCW sing 507 n n C3 O3 PCW sing 508 n n C3 H31 PCW sing 509 n n C3 H32 PCW sing 510 n n C4 C5 PCW sing 511 n n C4 O4P PCW sing 512 n n C4 H41 PCW sing 513 n n C4 H42 PCW sing 514 n n C5 N PCW sing 515 n n C5 H51 PCW sing 516 n n C5 H52 PCW sing 517 n n C6 N PCW sing 518 n n C6 H61 PCW sing 519 n n C6 H62 PCW sing 520 n n C6 H63 PCW sing 521 n n C7 N PCW sing 522 n n C7 H71 PCW sing 523 n n C7 H72 PCW sing 524 n n C7 H73 PCW sing 525 n n C8 N PCW sing 526 n n C8 H81 PCW sing 527 n n C8 H82 PCW sing 528 n n C8 H83 PCW sing 529 n n C11 C12 PCW sing 530 n n C11 O3 PCW sing 531 n n C11 O11 PCW doub 532 n n C12 C13 PCW sing 533 n n C12 H121 PCW sing 534 n n C12 H122 PCW sing 535 n n C13 C14 PCW sing 536 n n C13 H131 PCW sing 537 n n C13 H132 PCW sing 538 n n C14 C15 PCW sing 539 n n C14 H141 PCW sing 540 n n C14 H142 PCW sing 541 n n C15 C16 PCW sing 542 n n C15 H151 PCW sing 543 n n C15 H152 PCW sing 544 n n C16 C17 PCW sing 545 n n C16 H161 PCW sing 546 n n C16 H162 PCW sing 547 n n C17 C18 PCW sing 548 n n C17 H171 PCW sing 549 n n C17 H172 PCW sing 550 n n C18 C19 PCW sing 551 n n C18 H181 PCW sing 552 n n C18 H182 PCW sing 553 n n C19 C20 PCW doub 554 z n C19 H19 PCW sing 555 n n C20 C21 PCW sing 556 n n C20 H20 PCW sing 557 n n C21 C22 PCW sing 558 n n C21 H211 PCW sing 559 n n C21 H212 PCW sing 560 n n C22 C23 PCW sing 561 n n C22 H221 PCW sing 562 n n C22 H222 PCW sing 563 n n C23 C24 PCW sing 564 n n C23 H231 PCW sing 565 n n C23 H232 PCW sing 566 n n C24 C25 PCW sing 567 n n C24 H241 PCW sing 568 n n C24 H242 PCW sing 569 n n C25 C26 PCW sing 570 n n C25 H251 PCW sing 571 n n C25 H252 PCW sing 572 n n C26 C27 PCW sing 573 n n C26 H261 PCW sing 574 n n C26 H262 PCW sing 575 n n C27 C28 PCW sing 576 n n C27 H271 PCW sing 577 n n C27 H272 PCW sing 578 n n C28 H281 PCW sing 579 n n C28 H282 PCW sing 580 n n C28 H283 PCW sing 581 n n C31 C32 PCW sing 582 n n C31 O2 PCW sing 583 n n C31 O31 PCW doub 584 n n C32 C33 PCW sing 585 n n C32 H321 PCW sing 586 n n C32 H322 PCW sing 587 n n C33 C34 PCW sing 588 n n C33 H331 PCW sing 589 n n C33 H332 PCW sing 590 n n C34 C35 PCW sing 591 n n C34 H341 PCW sing 592 n n C34 H342 PCW sing 593 n n C35 C36 PCW sing 594 n n C35 H351 PCW sing 595 n n C35 H352 PCW sing 596 n n C36 C37 PCW sing 597 n n C36 H361 PCW sing 598 n n C36 H362 PCW sing 599 n n C37 C38 PCW sing 600 n n C37 H371 PCW sing 601 n n C37 H372 PCW sing 602 n n C38 C39 PCW sing 603 n n C38 H381 PCW sing 604 n n C38 H382 PCW sing 605 n n C39 C40 PCW doub 606 z n C39 H39 PCW sing 607 n n C40 C41 PCW sing 608 n n C40 H40 PCW sing 609 n n C41 C42 PCW sing 610 n n C41 H411 PCW sing 611 n n C41 H412 PCW sing 612 n n C42 C43 PCW sing 613 n n C42 H421 PCW sing 614 n n C42 H422 PCW sing 615 n n C43 C44 PCW sing 616 n n C43 H431 PCW sing 617 n n C43 H432 PCW sing 618 n n C44 C45 PCW sing 619 n n C44 H441 PCW sing 620 n n C44 H442 PCW sing 621 n n C45 C46 PCW sing 622 n n C45 H451 PCW sing 623 n n C45 H452 PCW sing 624 n n C46 C47 PCW sing 625 n n C46 H461 PCW sing 626 n n C46 H462 PCW sing 627 n n C47 C48 PCW sing 628 n n C47 H471 PCW sing 629 n n C47 H472 PCW sing 630 n n C48 H481 PCW sing 631 n n C48 H482 PCW sing 632 n n C48 H483 PCW sing 633 n n O1P P PCW sing 634 n n O1P H1P PCW sing 635 n n O2P P PCW doub 636 n n O3P P PCW sing 637 n n O4P P PCW sing 638 n n # _atom_sites.entry_id 4F2A _atom_sites.fract_transf_matrix[1][1] 0.014541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 2OB A 1 605 485 2OB 2OB . D 3 2OB A 1 606 486 2OB 2OB . E 4 PCW A 1 607 488 PCW PC8 . F 5 PGE A 1 608 493 PGE PGE . G 6 CL A 1 609 494 CL CL . H 7 0SF A 1 610 4000 0SF 0SF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . E 4 -21.661 19.113 -23.551 1 131.73 ? C1 PCW 607 A 1 HETATM 2 C C2 PCW . . . E 4 -21.482 18.217 -22.325 1 121.31 ? C2 PCW 607 A 1 HETATM 3 C C3 PCW . . . E 4 -22.706 17.35 -22.129 1 121.16 ? C3 PCW 607 A 1 HETATM 4 C C4 PCW . . . E 4 -24.682 21.683 -24.583 1 154.18 ? C4 PCW 607 A 1 HETATM 5 C C5 PCW . . . E 4 -25.466 20.54 -23.908 1 153.84 ? C5 PCW 607 A 1 HETATM 6 C C6 PCW . . . E 4 -27.596 21.632 -23.389 1 152.77 ? C6 PCW 607 A 1 HETATM 7 C C7 PCW . . . E 4 -27.462 19.277 -23.491 1 151.94 ? C7 PCW 607 A 1 HETATM 8 C C8 PCW . . . E 4 -27.299 20.504 -25.526 1 152.85 ? C8 PCW 607 A 1 HETATM 9 C C11 PCW . . . E 4 -24.656 18.416 -20.839 1 123.83 ? C11 PCW 607 A 1 HETATM 10 C C12 PCW . . . E 4 -24.356 17.765 -19.501 1 119.05 ? C12 PCW 607 A 1 HETATM 11 C C13 PCW . . . E 4 -23.145 18.393 -18.824 1 112.96 ? C13 PCW 607 A 1 HETATM 12 C C14 PCW . . . E 4 -23.521 19.677 -18.097 1 107.19 ? C14 PCW 607 A 1 HETATM 13 C C15 PCW . . . E 4 -23.279 19.556 -16.601 1 103.07 ? C15 PCW 607 A 1 HETATM 14 C C16 PCW . . . E 4 -21.816 19.783 -16.228 1 100.01 ? C16 PCW 607 A 1 HETATM 15 C C17 PCW . . . E 4 -21.558 19.613 -14.738 1 98.37 ? C17 PCW 607 A 1 HETATM 16 C C18 PCW . . . E 4 -21.514 18.136 -14.361 1 97.81 ? C18 PCW 607 A 1 HETATM 17 C C19 PCW . . . E 4 -20.092 17.686 -14.118 1 96.93 ? C19 PCW 607 A 1 HETATM 18 C C20 PCW . . . E 4 -19.558 16.547 -14.579 1 95.52 ? C20 PCW 607 A 1 HETATM 19 C C21 PCW . . . E 4 -20.287 15.521 -15.431 1 92.67 ? C21 PCW 607 A 1 HETATM 20 C C22 PCW . . . E 4 -19.413 14.293 -15.638 1 89.98 ? C22 PCW 607 A 1 HETATM 21 C C23 PCW . . . E 4 -18.248 14.617 -16.56 1 90.54 ? C23 PCW 607 A 1 HETATM 22 C C24 PCW . . . E 4 -17.709 13.374 -17.266 1 91.93 ? C24 PCW 607 A 1 HETATM 23 C C25 PCW . . . E 4 -18.347 13.102 -18.629 1 91.66 ? C25 PCW 607 A 1 HETATM 24 C C26 PCW . . . E 4 -17.877 14.054 -19.727 1 91.07 ? C26 PCW 607 A 1 HETATM 25 C C27 PCW . . . E 4 -16.815 13.409 -20.599 1 90.58 ? C27 PCW 607 A 1 HETATM 26 C C28 PCW . . . E 4 -15.507 14.112 -20.337 1 90.92 ? C28 PCW 607 A 1 HETATM 27 C C31 PCW . . . E 4 -19.226 17.433 -23.229 1 108.37 ? C31 PCW 607 A 1 HETATM 28 C C32 PCW . . . E 4 -18.09 16.465 -23.033 1 103.84 ? C32 PCW 607 A 1 HETATM 29 C C33 PCW . . . E 4 -18.024 15.515 -24.22 1 100.15 ? C33 PCW 607 A 1 HETATM 30 C C34 PCW . . . E 4 -17.086 16.071 -25.281 1 96.75 ? C34 PCW 607 A 1 HETATM 31 C C35 PCW . . . E 4 -16.388 14.926 -25.993 1 95.1 ? C35 PCW 607 A 1 HETATM 32 C C36 PCW . . . E 4 -16.535 15.042 -27.504 1 94.18 ? C36 PCW 607 A 1 HETATM 33 C C37 PCW . . . E 4 -15.2 15.445 -28.108 1 93.17 ? C37 PCW 607 A 1 HETATM 34 C C38 PCW . . . E 4 -14.747 14.494 -29.199 1 93.01 ? C38 PCW 607 A 1 HETATM 35 C C39 PCW . . . E 4 -13.972 13.361 -28.572 1 93.89 ? C39 PCW 607 A 1 HETATM 36 C C40 PCW . . . E 4 -14.398 12.102 -28.599 1 95.34 ? C40 PCW 607 A 1 HETATM 37 C C41 PCW . . . E 4 -15.702 11.657 -29.244 1 97.21 ? C41 PCW 607 A 1 HETATM 38 C C42 PCW . . . E 4 -16.281 10.447 -28.508 1 100.01 ? C42 PCW 607 A 1 HETATM 39 C C43 PCW . . . E 4 -15.215 9.644 -27.744 1 102.34 ? C43 PCW 607 A 1 HETATM 40 C C44 PCW . . . E 4 -15.718 8.275 -27.272 1 102.71 ? C44 PCW 607 A 1 HETATM 41 C C45 PCW . . . E 4 -14.728 7.12 -27.474 1 100.81 ? C45 PCW 607 A 1 HETATM 42 C C46 PCW . . . E 4 -13.388 7.355 -26.79 1 101.28 ? C46 PCW 607 A 1 HETATM 43 C C47 PCW . . . E 4 -13.484 7.185 -25.278 1 103.81 ? C47 PCW 607 A 1 HETATM 44 C C48 PCW . . . E 4 -13.176 8.491 -24.576 1 104.42 ? C48 PCW 607 A 1 HETATM 45 N N PCW . . . E 4 -26.939 20.515 -24.092 1 153.09 ? N PCW 607 A 1 HETATM 46 O O2 PCW . . . E 4 -20.344 17.349 -22.291 1 113.57 ? O2 PCW 607 A 1 HETATM 47 O O3 PCW . . . E 4 -23.863 18.176 -22.038 1 123.2 ? O3 PCW 607 A 1 HETATM 48 O O11 PCW . . . E 4 -25.616 19.171 -20.947 1 127.25 ? O11 PCW 607 A 1 HETATM 49 O O31 PCW . . . E 4 -19.178 18.227 -24.157 1 109.07 ? O31 PCW 607 A 1 HETATM 50 O O1P PCW . . . E 4 -22.151 23.254 -23.308 1 149.86 ? O1P PCW 607 A 1 HETATM 51 O O2P PCW . . . E 4 -20.763 21.744 -25.196 1 151.09 ? O2P PCW 607 A 1 HETATM 52 O O3P PCW . . . E 4 -21.762 20.476 -23.127 1 142.35 ? O3P PCW 607 A 1 HETATM 53 O O4P PCW . . . E 4 -23.364 21.255 -24.964 1 153.17 ? O4P PCW 607 A 1 HETATM 54 P P PCW . . . E 4 -21.997 21.688 -24.18 1 150.63 ? P PCW 607 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #