data_4F2A # _model_server_result.job_id PxcIJgeSR2rijFVMsAjvBA _model_server_result.datetime_utc '2024-11-23 19:58:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":610}' # _entry.id 4F2A # _exptl.entry_id 4F2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 567.884 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-3-{[4-(4-chloro-3-ethylphenoxy)pyrimidin-2-yl][3-(1,1,2,2-tetrafluoroethoxy)benzyl]amino}-1,1,1-trifluoropropan-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F2A _cell.length_a 68.772 _cell.length_b 69.915 _cell.length_c 187.145 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 601 NAG 2 n B NAG 2 B 2 NAG A 602 NAG 2 n B MAN 3 B 3 MAN A 603 MAN 2 n B FUC 4 B 4 FUC A 606 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 143 A CYS 143 1_555 A SG CYS 184 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 396 A ASN 396 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale3 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C24 H21 Cl F7 N3 O3' _chem_comp.formula_weight 567.884 _chem_comp.id 0SF _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-3-{[4-(4-chloro-3-ethylphenoxy)pyrimidin-2-yl][3-(1,1,2,2-tetrafluoroethoxy)benzyl]amino}-1,1,1-trifluoropropan-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C21 0SF sing 1 n n F7 C24 0SF sing 2 n n C21 F2 0SF sing 3 n n C21 C20 0SF sing 4 n n F5 C24 0SF sing 5 n n C24 F6 0SF sing 6 n n C24 C23 0SF sing 7 n n F3 C20 0SF sing 8 n n C20 O2 0SF sing 9 n n C20 F4 0SF sing 10 n n C22 C23 0SF sing 11 n n C22 N3 0SF sing 12 n n C23 O3 0SF sing 13 n n N1 C11 0SF doub 14 n y N1 C12 0SF sing 15 n y O2 C18 0SF sing 16 n n C11 C10 0SF sing 17 n y C18 C17 0SF doub 18 n y C18 C19 0SF sing 19 n y N3 C12 0SF sing 20 n n N3 C13 0SF sing 21 n n C17 C16 0SF sing 22 n y C19 C14 0SF doub 23 n y C12 N2 0SF doub 24 n y C16 C15 0SF doub 25 n y C14 C15 0SF sing 26 n y C14 C13 0SF sing 27 n n C10 C9 0SF doub 28 n y N2 C9 0SF sing 29 n y C9 O1 0SF sing 30 n n O1 C5 0SF sing 31 n n C4 C5 0SF doub 32 n y C4 C3 0SF sing 33 n y C2 C1 0SF sing 34 n n C2 C3 0SF sing 35 n n C5 C6 0SF sing 36 n y C3 C8 0SF doub 37 n y C6 C7 0SF doub 38 n y C8 C7 0SF sing 39 n y C8 CL1 0SF sing 40 n n C1 H2 0SF sing 41 n n C1 H3 0SF sing 42 n n C1 H4 0SF sing 43 n n C2 H6 0SF sing 44 n n C2 H5 0SF sing 45 n n C4 H7 0SF sing 46 n n C6 H8 0SF sing 47 n n C7 H9 0SF sing 48 n n C10 H10 0SF sing 49 n n C11 H11 0SF sing 50 n n C13 H12 0SF sing 51 n n C13 H13 0SF sing 52 n n C15 H14 0SF sing 53 n n C16 H15 0SF sing 54 n n C17 H16 0SF sing 55 n n C19 H17 0SF sing 56 n n C21 H18 0SF sing 57 n n C22 H20 0SF sing 58 n n C22 H19 0SF sing 59 n n C23 H1 0SF sing 60 n n O3 H21 0SF sing 61 n n # _atom_sites.entry_id 4F2A _atom_sites.fract_transf_matrix[1][1] 0.014541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 2OB A 1 605 485 2OB 2OB . D 3 2OB A 1 606 486 2OB 2OB . E 4 PCW A 1 607 488 PCW PC8 . F 5 PGE A 1 608 493 PGE PGE . G 6 CL A 1 609 494 CL CL . H 7 0SF A 1 610 4000 0SF 0SF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0SF . . . H 7 -13.878 4.875 -34.972 1 106.05 ? C1 0SF 610 A 1 HETATM 2 C C2 0SF . . . H 7 -13.151 3.539 -35.021 1 104.51 ? C2 0SF 610 A 1 HETATM 3 C C3 0SF . . . H 7 -11.766 3.708 -34.496 1 102.34 ? C3 0SF 610 A 1 HETATM 4 C C4 0SF . . . H 7 -10.693 3.891 -35.361 1 100.81 ? C4 0SF 610 A 1 HETATM 5 C C5 0SF . . . H 7 -9.422 4.063 -34.822 1 99.3 ? C5 0SF 610 A 1 HETATM 6 C C6 0SF . . . H 7 -9.173 4.051 -33.45 1 97.86 ? C6 0SF 610 A 1 HETATM 7 C C7 0SF . . . H 7 -10.253 3.886 -32.593 1 98.12 ? C7 0SF 610 A 1 HETATM 8 C C8 0SF . . . H 7 -11.519 3.716 -33.13 1 101.55 ? C8 0SF 610 A 1 HETATM 9 CL CL1 0SF . . . H 7 -12.841 3.505 -32.051 1 105.73 ? CL1 0SF 610 A 1 HETATM 10 O O1 0SF . . . H 7 -8.343 4.392 -35.619 1 98.55 ? O1 0SF 610 A 1 HETATM 11 C C9 0SF . . . H 7 -8.107 3.629 -36.718 1 97.1 ? C9 0SF 610 A 1 HETATM 12 C C10 0SF . . . H 7 -7.133 4.12 -37.603 1 97.1 ? C10 0SF 610 A 1 HETATM 13 C C11 0SF . . . H 7 -6.853 3.309 -38.7 1 94.23 ? C11 0SF 610 A 1 HETATM 14 N N1 0SF . . . H 7 -7.446 2.119 -38.931 1 92.2 ? N1 0SF 610 A 1 HETATM 15 C C12 0SF . . . H 7 -8.404 1.741 -37.998 1 92.87 ? C12 0SF 610 A 1 HETATM 16 N N2 0SF . . . H 7 -8.77 2.453 -36.87 1 93.75 ? N2 0SF 610 A 1 HETATM 17 N N3 0SF . . . H 7 -9.078 0.551 -38.232 1 97.65 ? N3 0SF 610 A 1 HETATM 18 C C13 0SF . . . H 7 -10.089 0.032 -37.293 1 103.67 ? C13 0SF 610 A 1 HETATM 19 C C14 0SF . . . H 7 -11.488 0.419 -37.698 1 107.64 ? C14 0SF 610 A 1 HETATM 20 C C15 0SF . . . H 7 -12.54 -0.479 -37.503 1 105.27 ? C15 0SF 610 A 1 HETATM 21 C C16 0SF . . . H 7 -13.847 -0.093 -37.762 1 103.95 ? C16 0SF 610 A 1 HETATM 22 C C17 0SF . . . H 7 -14.139 1.196 -38.207 1 107.7 ? C17 0SF 610 A 1 HETATM 23 C C18 0SF . . . H 7 -13.079 2.066 -38.415 1 113.58 ? C18 0SF 610 A 1 HETATM 24 C C19 0SF . . . H 7 -11.748 1.689 -38.19 1 111.39 ? C19 0SF 610 A 1 HETATM 25 O O2 0SF . . . H 7 -13.175 3.394 -38.745 1 122.24 ? O2 0SF 610 A 1 HETATM 26 C C20 0SF . . . H 7 -14.315 3.86 -39.402 1 130.74 ? C20 0SF 610 A 1 HETATM 27 C C21 0SF . . . H 7 -14.702 3.019 -40.715 1 139.48 ? C21 0SF 610 A 1 HETATM 28 F F1 0SF . . . H 7 -14.738 3.864 -41.753 1 144 ? F1 0SF 610 A 1 HETATM 29 F F2 0SF . . . H 7 -15.963 2.577 -40.596 1 141.71 ? F2 0SF 610 A 1 HETATM 30 F F3 0SF . . . H 7 -14.003 5.121 -39.715 1 128.52 ? F3 0SF 610 A 1 HETATM 31 F F4 0SF . . . H 7 -15.316 3.936 -38.522 1 132.49 ? F4 0SF 610 A 1 HETATM 32 C C22 0SF . . . H 7 -8.611 -0.319 -39.313 1 98.15 ? C22 0SF 610 A 1 HETATM 33 C C23 0SF . . . H 7 -7.235 -0.928 -38.949 1 99.77 ? C23 0SF 610 A 1 HETATM 34 C C24 0SF . . . H 7 -6.731 -1.769 -40.192 1 102.65 ? C24 0SF 610 A 1 HETATM 35 F F5 0SF . . . H 7 -7.588 -2.709 -40.612 1 104.37 ? F5 0SF 610 A 1 HETATM 36 F F6 0SF . . . H 7 -5.586 -2.416 -39.929 1 100.67 ? F6 0SF 610 A 1 HETATM 37 F F7 0SF . . . H 7 -6.484 -1.011 -41.267 1 105.11 ? F7 0SF 610 A 1 HETATM 38 O O3 0SF . . . H 7 -7.452 -1.797 -37.893 1 99.2 ? O3 0SF 610 A 1 HETATM 39 H H2 0SF . . . H 7 -13.37 5.647 -35.565 0 106.02 ? H2 0SF 610 A 1 HETATM 40 H H3 0SF . . . H 7 -14.901 4.793 -35.365 0 106.02 ? H3 0SF 610 A 1 HETATM 41 H H4 0SF . . . H 7 -13.959 5.258 -33.944 0 106.02 ? H4 0SF 610 A 1 HETATM 42 H H6 0SF . . . H 7 -13.142 3.136 -36.056 0 104.47 ? H6 0SF 610 A 1 HETATM 43 H H5 0SF . . . H 7 -13.699 2.771 -34.432 0 104.47 ? H5 0SF 610 A 1 HETATM 44 H H7 0SF . . . H 7 -10.862 3.895 -36.441 0 100.86 ? H7 0SF 610 A 1 HETATM 45 H H8 0SF . . . H 7 -8.16 4.185 -33.06 0 97.88 ? H8 0SF 610 A 1 HETATM 46 H H9 0SF . . . H 7 -10.12 3.896 -31.508 0 98.08 ? H9 0SF 610 A 1 HETATM 47 H H10 0SF . . . H 7 -6.623 5.067 -37.429 0 97.11 ? H10 0SF 610 A 1 HETATM 48 H H11 0SF . . . H 7 -6.105 3.598 -39.452 0 94.24 ? H11 0SF 610 A 1 HETATM 49 H H12 0SF . . . H 7 -9.979 -1.078 -37.216 0 103.69 ? H12 0SF 610 A 1 HETATM 50 H H13 0SF . . . H 7 -9.919 0.395 -36.25 0 103.69 ? H13 0SF 610 A 1 HETATM 51 H H14 0SF . . . H 7 -12.342 -1.491 -37.134 0 105.21 ? H14 0SF 610 A 1 HETATM 52 H H15 0SF . . . H 7 -14.665 -0.802 -37.603 0 103.9 ? H15 0SF 610 A 1 HETATM 53 H H16 0SF . . . H 7 -15.185 1.474 -38.355 0 107.72 ? H16 0SF 610 A 1 HETATM 54 H H17 0SF . . . H 7 -10.948 2.41 -38.383 0 111.48 ? H17 0SF 610 A 1 HETATM 55 H H18 0SF . . . H 7 -13.979 2.174 -40.895 0 139.66 ? H18 0SF 610 A 1 HETATM 56 H H20 0SF . . . H 7 -8.536 0.247 -40.273 0 98.14 ? H20 0SF 610 A 1 HETATM 57 H H19 0SF . . . H 7 -9.36 -1.125 -39.497 0 98.14 ? H19 0SF 610 A 1 HETATM 58 H H1 0SF . . . H 7 -6.457 -0.145 -38.738 0 99.71 ? H1 0SF 610 A 1 HETATM 59 H H21 0SF . . . H 7 -6.597 -2.038 -37.518 0 99.05 ? H21 0SF 610 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 59 #