data_4F2V
#
_model_server_result.job_id            dtzPZlziN1GQ6kZIVbg4Vw 
_model_server_result.datetime_utc      '2024-10-19 05:30:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4f2v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4F2V 
#
_exptl.entry_id    4F2V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4F2V 
_cell.length_a            51.447 
_cell.length_b            83.591 
_cell.length_c            126.617 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4F2V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C CXM 1 A CXM 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C LEU 7 A LEU 7 1_555 A N MSE 8 A MSE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale3 A C MSE 8 A MSE 8 1_555 A N GLN 9 A GLN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 A C GLN 33 A GLN 33 1_555 A N MSE 34 A MSE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 A C MSE 34 A MSE 34 1_555 A N ARG 35 A ARG 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 A C LYS 140 A LYS 140 1_555 A N MSE 141 A MSE 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 A C MSE 141 A MSE 141 1_555 A N ALA 142 A ALA 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale8 A C HIS 186 A HIS 186 1_555 A N MSE 187 A MSE 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 A C MSE 187 A MSE 187 1_555 A N MSE 188 A MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale10 A C MSE 188 A MSE 188 1_555 A N ALA 189 A ALA 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale11 A C VAL 200 A VAL 200 1_555 A N MSE 201 A MSE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale12 A C MSE 201 A MSE 201 1_555 A N THR 202 A THR 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale13 A C HIS 212 A HIS 212 1_555 A N MSE 213 A MSE 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale14 A C MSE 213 A MSE 213 1_555 A N ASP 214 A ASP 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale15 B C CXM 1 B CXM 1 1_555 B N LYS 2 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale16 B C LEU 7 B LEU 7 1_555 B N MSE 8 B MSE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale17 B C MSE 8 B MSE 8 1_555 B N GLN 9 B GLN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale18 B C GLN 33 B GLN 33 1_555 B N MSE 34 B MSE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale19 B C MSE 34 B MSE 34 1_555 B N ARG 35 B ARG 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale20 B C LYS 140 B LYS 140 1_555 B N MSE 141 B MSE 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale21 B C MSE 141 B MSE 141 1_555 B N ALA 142 B ALA 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale22 B C HIS 186 B HIS 186 1_555 B N MSE 187 B MSE 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale23 B C MSE 187 B MSE 187 1_555 B N MSE 188 B MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale24 B C MSE 188 B MSE 188 1_555 B N ALA 189 B ALA 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale25 B C VAL 200 B VAL 200 1_555 B N MSE 201 B MSE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale26 B C MSE 201 B MSE 201 1_555 B N THR 202 B THR 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale27 B C HIS 212 B HIS 212 1_555 B N MSE 213 B MSE 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale28 B C MSE 213 B MSE 213 1_555 B N ASP 214 B ASP 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 341 n n 
C1 C2 PEG sing 342 n n 
C1 H11 PEG sing 343 n n 
C1 H12 PEG sing 344 n n 
O1 HO1 PEG sing 345 n n 
C2 O2 PEG sing 346 n n 
C2 H21 PEG sing 347 n n 
C2 H22 PEG sing 348 n n 
O2 C3 PEG sing 349 n n 
C3 C4 PEG sing 350 n n 
C3 H31 PEG sing 351 n n 
C3 H32 PEG sing 352 n n 
C4 O4 PEG sing 353 n n 
C4 H41 PEG sing 354 n n 
C4 H42 PEG sing 355 n n 
O4 HO4 PEG sing 356 n n 
#
_atom_sites.entry_id                     4F2V 
_atom_sites.fract_transf_matrix[1][1]    0.019437 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011963 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007898 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LMU A 1 301 1 LMU LMU . 
D 3 PEG A 1 302 1 PEG PEG . 
E 2 LMU B 1 301 2 LMU LMU . 
F 4 HOH A 1 401 1 HOH HOH . 
F 4 HOH A 2 402 2 HOH HOH . 
F 4 HOH A 3 403 3 HOH HOH . 
F 4 HOH A 4 404 4 HOH HOH . 
F 4 HOH A 5 405 5 HOH HOH . 
F 4 HOH A 6 406 7 HOH HOH . 
F 4 HOH A 7 407 8 HOH HOH . 
F 4 HOH A 8 408 9 HOH HOH . 
F 4 HOH A 9 409 10 HOH HOH . 
F 4 HOH A 10 410 12 HOH HOH . 
F 4 HOH A 11 411 13 HOH HOH . 
F 4 HOH A 12 412 14 HOH HOH . 
F 4 HOH A 13 413 15 HOH HOH . 
F 4 HOH A 14 414 16 HOH HOH . 
F 4 HOH A 15 415 19 HOH HOH . 
F 4 HOH A 16 416 23 HOH HOH . 
F 4 HOH A 17 417 28 HOH HOH . 
F 4 HOH A 18 418 31 HOH HOH . 
F 4 HOH A 19 419 33 HOH HOH . 
F 4 HOH A 20 420 34 HOH HOH . 
F 4 HOH A 21 421 35 HOH HOH . 
F 4 HOH A 22 422 39 HOH HOH . 
F 4 HOH A 23 423 43 HOH HOH . 
F 4 HOH A 24 424 45 HOH HOH . 
F 4 HOH A 25 425 48 HOH HOH . 
F 4 HOH A 26 426 49 HOH HOH . 
F 4 HOH A 27 427 52 HOH HOH . 
F 4 HOH A 28 428 53 HOH HOH . 
F 4 HOH A 29 429 54 HOH HOH . 
F 4 HOH A 30 430 55 HOH HOH . 
F 4 HOH A 31 431 56 HOH HOH . 
F 4 HOH A 32 432 57 HOH HOH . 
F 4 HOH A 33 433 59 HOH HOH . 
F 4 HOH A 34 434 60 HOH HOH . 
F 4 HOH A 35 435 62 HOH HOH . 
F 4 HOH A 36 436 63 HOH HOH . 
F 4 HOH A 37 437 67 HOH HOH . 
F 4 HOH A 38 438 69 HOH HOH . 
F 4 HOH A 39 439 70 HOH HOH . 
F 4 HOH A 40 440 71 HOH HOH . 
F 4 HOH A 41 441 73 HOH HOH . 
F 4 HOH A 42 442 75 HOH HOH . 
F 4 HOH A 43 443 76 HOH HOH . 
F 4 HOH A 44 444 78 HOH HOH . 
F 4 HOH A 45 445 79 HOH HOH . 
F 4 HOH A 46 446 85 HOH HOH . 
F 4 HOH A 47 447 86 HOH HOH . 
F 4 HOH A 48 448 88 HOH HOH . 
F 4 HOH A 49 449 90 HOH HOH . 
F 4 HOH A 50 450 91 HOH HOH . 
F 4 HOH A 51 451 94 HOH HOH . 
F 4 HOH A 52 452 96 HOH HOH . 
F 4 HOH A 53 453 98 HOH HOH . 
F 4 HOH A 54 454 101 HOH HOH . 
F 4 HOH A 55 455 103 HOH HOH . 
F 4 HOH A 56 456 105 HOH HOH . 
F 4 HOH A 57 457 107 HOH HOH . 
F 4 HOH A 58 458 108 HOH HOH . 
F 4 HOH A 59 459 109 HOH HOH . 
F 4 HOH A 60 460 112 HOH HOH . 
F 4 HOH A 61 461 113 HOH HOH . 
F 4 HOH A 62 462 114 HOH HOH . 
G 4 HOH B 1 401 6 HOH HOH . 
G 4 HOH B 2 402 11 HOH HOH . 
G 4 HOH B 3 403 17 HOH HOH . 
G 4 HOH B 4 404 18 HOH HOH . 
G 4 HOH B 5 405 20 HOH HOH . 
G 4 HOH B 6 406 21 HOH HOH . 
G 4 HOH B 7 407 22 HOH HOH . 
G 4 HOH B 8 408 24 HOH HOH . 
G 4 HOH B 9 409 25 HOH HOH . 
G 4 HOH B 10 410 26 HOH HOH . 
G 4 HOH B 11 411 29 HOH HOH . 
G 4 HOH B 12 412 30 HOH HOH . 
G 4 HOH B 13 413 32 HOH HOH . 
G 4 HOH B 14 414 36 HOH HOH . 
G 4 HOH B 15 415 37 HOH HOH . 
G 4 HOH B 16 416 38 HOH HOH . 
G 4 HOH B 17 417 40 HOH HOH . 
G 4 HOH B 18 418 41 HOH HOH . 
G 4 HOH B 19 419 42 HOH HOH . 
G 4 HOH B 20 420 44 HOH HOH . 
G 4 HOH B 21 421 46 HOH HOH . 
G 4 HOH B 22 422 47 HOH HOH . 
G 4 HOH B 23 423 50 HOH HOH . 
G 4 HOH B 24 424 51 HOH HOH . 
G 4 HOH B 25 425 58 HOH HOH . 
G 4 HOH B 26 426 61 HOH HOH . 
G 4 HOH B 27 427 64 HOH HOH . 
G 4 HOH B 28 428 65 HOH HOH . 
G 4 HOH B 29 429 66 HOH HOH . 
G 4 HOH B 30 430 68 HOH HOH . 
G 4 HOH B 31 431 72 HOH HOH . 
G 4 HOH B 32 432 77 HOH HOH . 
G 4 HOH B 33 433 80 HOH HOH . 
G 4 HOH B 34 434 81 HOH HOH . 
G 4 HOH B 35 435 82 HOH HOH . 
G 4 HOH B 36 436 83 HOH HOH . 
G 4 HOH B 37 437 84 HOH HOH . 
G 4 HOH B 38 438 92 HOH HOH . 
G 4 HOH B 39 439 93 HOH HOH . 
G 4 HOH B 40 440 95 HOH HOH . 
G 4 HOH B 41 441 97 HOH HOH . 
G 4 HOH B 42 442 99 HOH HOH . 
G 4 HOH B 43 443 100 HOH HOH . 
G 4 HOH B 44 444 102 HOH HOH . 
G 4 HOH B 45 445 106 HOH HOH . 
G 4 HOH B 46 446 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . D 3 15.684 2.107 27.965 1 62.65 ? C1 PEG 302 A 1 
HETATM 2 O O1 PEG . . . D 3 15.269 1.299 26.876 1 59.9 ? O1 PEG 302 A 1 
HETATM 3 C C2 PEG . . . D 3 17.079 2.691 27.715 1 65.96 ? C2 PEG 302 A 1 
HETATM 4 O O2 PEG . . . D 3 17.11 3.491 26.505 1 65.67 ? O2 PEG 302 A 1 
HETATM 5 C C3 PEG . . . D 3 18.399 4.155 26.415 1 62.66 ? C3 PEG 302 A 1 
HETATM 6 C C4 PEG . . . D 3 18.585 4.973 25.125 1 57.33 ? C4 PEG 302 A 1 
HETATM 7 O O4 PEG . . . D 3 17.594 5.999 24.994 1 53.67 ? O4 PEG 302 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           7 
#