data_4F2W # _model_server_result.job_id 9VjqAZi-MkcL7Gcg-AmUSQ _model_server_result.datetime_utc '2024-11-20 13:35:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 4F2W # _exptl.entry_id 4F2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F2W _cell.length_a 69.41 _cell.length_b 82.54 _cell.length_c 93.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 I N N ? 3 J N N ? 3 K N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4F2W _atom_sites.fract_transf_matrix[1][1] 0.014407 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TDI A 1 301 1 TDI TD2 . D 3 EDO A 1 302 1 EDO EDO . E 3 EDO A 1 303 3 EDO EDO . F 3 EDO A 1 304 6 EDO EDO . G 4 CL A 1 305 1 CL CL . H 2 TDI B 1 301 2 TDI TD2 . I 3 EDO B 1 302 2 EDO EDO . J 3 EDO B 1 303 4 EDO EDO . K 3 EDO B 1 304 5 EDO EDO . L 4 CL B 1 305 2 CL CL . M 5 HOH A 1 401 3 HOH HOH . M 5 HOH A 2 402 4 HOH HOH . M 5 HOH A 3 403 8 HOH HOH . M 5 HOH A 4 404 10 HOH HOH . M 5 HOH A 5 405 12 HOH HOH . M 5 HOH A 6 406 15 HOH HOH . M 5 HOH A 7 407 20 HOH HOH . M 5 HOH A 8 408 25 HOH HOH . M 5 HOH A 9 409 28 HOH HOH . M 5 HOH A 10 410 30 HOH HOH . M 5 HOH A 11 411 31 HOH HOH . M 5 HOH A 12 412 32 HOH HOH . M 5 HOH A 13 413 36 HOH HOH . M 5 HOH A 14 414 37 HOH HOH . M 5 HOH A 15 415 38 HOH HOH . M 5 HOH A 16 416 39 HOH HOH . M 5 HOH A 17 417 40 HOH HOH . M 5 HOH A 18 418 44 HOH HOH . M 5 HOH A 19 419 45 HOH HOH . M 5 HOH A 20 420 49 HOH HOH . M 5 HOH A 21 421 51 HOH HOH . M 5 HOH A 22 422 54 HOH HOH . M 5 HOH A 23 423 55 HOH HOH . M 5 HOH A 24 424 57 HOH HOH . M 5 HOH A 25 425 58 HOH HOH . M 5 HOH A 26 426 62 HOH HOH . M 5 HOH A 27 427 63 HOH HOH . M 5 HOH A 28 428 64 HOH HOH . M 5 HOH A 29 429 66 HOH HOH . M 5 HOH A 30 430 71 HOH HOH . M 5 HOH A 31 431 74 HOH HOH . M 5 HOH A 32 432 76 HOH HOH . M 5 HOH A 33 433 77 HOH HOH . M 5 HOH A 34 434 78 HOH HOH . M 5 HOH A 35 435 80 HOH HOH . M 5 HOH A 36 436 82 HOH HOH . M 5 HOH A 37 437 84 HOH HOH . M 5 HOH A 38 438 85 HOH HOH . M 5 HOH A 39 439 87 HOH HOH . M 5 HOH A 40 440 90 HOH HOH . M 5 HOH A 41 441 91 HOH HOH . M 5 HOH A 42 442 93 HOH HOH . M 5 HOH A 43 443 94 HOH HOH . M 5 HOH A 44 444 96 HOH HOH . M 5 HOH A 45 445 98 HOH HOH . M 5 HOH A 46 446 100 HOH HOH . M 5 HOH A 47 447 101 HOH HOH . M 5 HOH A 48 448 102 HOH HOH . M 5 HOH A 49 449 104 HOH HOH . M 5 HOH A 50 450 105 HOH HOH . M 5 HOH A 51 451 109 HOH HOH . M 5 HOH A 52 452 111 HOH HOH . M 5 HOH A 53 453 115 HOH HOH . M 5 HOH A 54 454 116 HOH HOH . M 5 HOH A 55 455 117 HOH HOH . M 5 HOH A 56 456 119 HOH HOH . M 5 HOH A 57 457 120 HOH HOH . M 5 HOH A 58 458 121 HOH HOH . M 5 HOH A 59 459 122 HOH HOH . M 5 HOH A 60 460 123 HOH HOH . M 5 HOH A 61 461 128 HOH HOH . M 5 HOH A 62 462 129 HOH HOH . M 5 HOH A 63 463 131 HOH HOH . M 5 HOH A 64 464 133 HOH HOH . M 5 HOH A 65 465 134 HOH HOH . M 5 HOH A 66 466 136 HOH HOH . M 5 HOH A 67 467 138 HOH HOH . M 5 HOH A 68 468 140 HOH HOH . M 5 HOH A 69 469 141 HOH HOH . M 5 HOH A 70 470 144 HOH HOH . M 5 HOH A 71 471 146 HOH HOH . M 5 HOH A 72 472 149 HOH HOH . M 5 HOH A 73 473 150 HOH HOH . M 5 HOH A 74 474 152 HOH HOH . M 5 HOH A 75 475 155 HOH HOH . M 5 HOH A 76 476 157 HOH HOH . M 5 HOH A 77 477 158 HOH HOH . M 5 HOH A 78 478 159 HOH HOH . M 5 HOH A 79 479 161 HOH HOH . M 5 HOH A 80 480 162 HOH HOH . M 5 HOH A 81 481 163 HOH HOH . M 5 HOH A 82 482 164 HOH HOH . M 5 HOH A 83 483 166 HOH HOH . M 5 HOH A 84 484 168 HOH HOH . M 5 HOH A 85 485 169 HOH HOH . M 5 HOH A 86 486 171 HOH HOH . M 5 HOH A 87 487 172 HOH HOH . M 5 HOH A 88 488 174 HOH HOH . M 5 HOH A 89 489 175 HOH HOH . M 5 HOH A 90 490 176 HOH HOH . M 5 HOH A 91 491 178 HOH HOH . M 5 HOH A 92 492 180 HOH HOH . M 5 HOH A 93 493 181 HOH HOH . M 5 HOH A 94 494 185 HOH HOH . M 5 HOH A 95 495 188 HOH HOH . M 5 HOH A 96 496 189 HOH HOH . M 5 HOH A 97 497 190 HOH HOH . M 5 HOH A 98 498 192 HOH HOH . M 5 HOH A 99 499 198 HOH HOH . M 5 HOH A 100 500 199 HOH HOH . M 5 HOH A 101 501 200 HOH HOH . M 5 HOH A 102 502 202 HOH HOH . M 5 HOH A 103 503 203 HOH HOH . M 5 HOH A 104 504 204 HOH HOH . M 5 HOH A 105 505 205 HOH HOH . M 5 HOH A 106 506 207 HOH HOH . M 5 HOH A 107 507 209 HOH HOH . M 5 HOH A 108 508 210 HOH HOH . M 5 HOH A 109 509 211 HOH HOH . M 5 HOH A 110 510 212 HOH HOH . M 5 HOH A 111 511 214 HOH HOH . M 5 HOH A 112 512 215 HOH HOH . M 5 HOH A 113 513 217 HOH HOH . M 5 HOH A 114 514 219 HOH HOH . M 5 HOH A 115 515 221 HOH HOH . M 5 HOH A 116 516 223 HOH HOH . M 5 HOH A 117 517 226 HOH HOH . M 5 HOH A 118 518 228 HOH HOH . M 5 HOH A 119 519 231 HOH HOH . M 5 HOH A 120 520 234 HOH HOH . M 5 HOH A 121 521 238 HOH HOH . M 5 HOH A 122 522 239 HOH HOH . M 5 HOH A 123 523 243 HOH HOH . M 5 HOH A 124 524 244 HOH HOH . M 5 HOH A 125 525 248 HOH HOH . M 5 HOH A 126 526 249 HOH HOH . M 5 HOH A 127 527 250 HOH HOH . M 5 HOH A 128 528 255 HOH HOH . M 5 HOH A 129 529 257 HOH HOH . M 5 HOH A 130 530 258 HOH HOH . M 5 HOH A 131 531 262 HOH HOH . M 5 HOH A 132 532 263 HOH HOH . M 5 HOH A 133 533 265 HOH HOH . M 5 HOH A 134 534 268 HOH HOH . M 5 HOH A 135 535 269 HOH HOH . M 5 HOH A 136 536 270 HOH HOH . N 5 HOH B 1 401 1 HOH HOH . N 5 HOH B 2 402 2 HOH HOH . N 5 HOH B 3 403 5 HOH HOH . N 5 HOH B 4 404 6 HOH HOH . N 5 HOH B 5 405 7 HOH HOH . N 5 HOH B 6 406 9 HOH HOH . N 5 HOH B 7 407 11 HOH HOH . N 5 HOH B 8 408 13 HOH HOH . N 5 HOH B 9 409 14 HOH HOH . N 5 HOH B 10 410 16 HOH HOH . N 5 HOH B 11 411 17 HOH HOH . N 5 HOH B 12 412 18 HOH HOH . N 5 HOH B 13 413 19 HOH HOH . N 5 HOH B 14 414 21 HOH HOH . N 5 HOH B 15 415 22 HOH HOH . N 5 HOH B 16 416 23 HOH HOH . N 5 HOH B 17 417 24 HOH HOH . N 5 HOH B 18 418 26 HOH HOH . N 5 HOH B 19 419 27 HOH HOH . N 5 HOH B 20 420 29 HOH HOH . N 5 HOH B 21 421 33 HOH HOH . N 5 HOH B 22 422 34 HOH HOH . N 5 HOH B 23 423 35 HOH HOH . N 5 HOH B 24 424 41 HOH HOH . N 5 HOH B 25 425 42 HOH HOH . N 5 HOH B 26 426 43 HOH HOH . N 5 HOH B 27 427 46 HOH HOH . N 5 HOH B 28 428 47 HOH HOH . N 5 HOH B 29 429 48 HOH HOH . N 5 HOH B 30 430 50 HOH HOH . N 5 HOH B 31 431 52 HOH HOH . N 5 HOH B 32 432 53 HOH HOH . N 5 HOH B 33 433 56 HOH HOH . N 5 HOH B 34 434 59 HOH HOH . N 5 HOH B 35 435 60 HOH HOH . N 5 HOH B 36 436 61 HOH HOH . N 5 HOH B 37 437 65 HOH HOH . N 5 HOH B 38 438 67 HOH HOH . N 5 HOH B 39 439 68 HOH HOH . N 5 HOH B 40 440 69 HOH HOH . N 5 HOH B 41 441 70 HOH HOH . N 5 HOH B 42 442 72 HOH HOH . N 5 HOH B 43 443 73 HOH HOH . N 5 HOH B 44 444 75 HOH HOH . N 5 HOH B 45 445 79 HOH HOH . N 5 HOH B 46 446 81 HOH HOH . N 5 HOH B 47 447 83 HOH HOH . N 5 HOH B 48 448 86 HOH HOH . N 5 HOH B 49 449 88 HOH HOH . N 5 HOH B 50 450 89 HOH HOH . N 5 HOH B 51 451 92 HOH HOH . N 5 HOH B 52 452 95 HOH HOH . N 5 HOH B 53 453 97 HOH HOH . N 5 HOH B 54 454 99 HOH HOH . N 5 HOH B 55 455 103 HOH HOH . N 5 HOH B 56 456 106 HOH HOH . N 5 HOH B 57 457 107 HOH HOH . N 5 HOH B 58 458 108 HOH HOH . N 5 HOH B 59 459 110 HOH HOH . N 5 HOH B 60 460 112 HOH HOH . N 5 HOH B 61 461 113 HOH HOH . N 5 HOH B 62 462 114 HOH HOH . N 5 HOH B 63 463 118 HOH HOH . N 5 HOH B 64 464 124 HOH HOH . N 5 HOH B 65 465 125 HOH HOH . N 5 HOH B 66 466 126 HOH HOH . N 5 HOH B 67 467 127 HOH HOH . N 5 HOH B 68 468 130 HOH HOH . N 5 HOH B 69 469 132 HOH HOH . N 5 HOH B 70 470 135 HOH HOH . N 5 HOH B 71 471 137 HOH HOH . N 5 HOH B 72 472 139 HOH HOH . N 5 HOH B 73 473 142 HOH HOH . N 5 HOH B 74 474 143 HOH HOH . N 5 HOH B 75 475 145 HOH HOH . N 5 HOH B 76 476 147 HOH HOH . N 5 HOH B 77 477 148 HOH HOH . N 5 HOH B 78 478 151 HOH HOH . N 5 HOH B 79 479 153 HOH HOH . N 5 HOH B 80 480 154 HOH HOH . N 5 HOH B 81 481 156 HOH HOH . N 5 HOH B 82 482 160 HOH HOH . N 5 HOH B 83 483 165 HOH HOH . N 5 HOH B 84 484 167 HOH HOH . N 5 HOH B 85 485 170 HOH HOH . N 5 HOH B 86 486 173 HOH HOH . N 5 HOH B 87 487 177 HOH HOH . N 5 HOH B 88 488 179 HOH HOH . N 5 HOH B 89 489 182 HOH HOH . N 5 HOH B 90 490 183 HOH HOH . N 5 HOH B 91 491 184 HOH HOH . N 5 HOH B 92 492 186 HOH HOH . N 5 HOH B 93 493 187 HOH HOH . N 5 HOH B 94 494 191 HOH HOH . N 5 HOH B 95 495 193 HOH HOH . N 5 HOH B 96 496 194 HOH HOH . N 5 HOH B 97 497 195 HOH HOH . N 5 HOH B 98 498 196 HOH HOH . N 5 HOH B 99 499 197 HOH HOH . N 5 HOH B 100 500 201 HOH HOH . N 5 HOH B 101 501 206 HOH HOH . N 5 HOH B 102 502 208 HOH HOH . N 5 HOH B 103 503 213 HOH HOH . N 5 HOH B 104 504 216 HOH HOH . N 5 HOH B 105 505 218 HOH HOH . N 5 HOH B 106 506 220 HOH HOH . N 5 HOH B 107 507 222 HOH HOH . N 5 HOH B 108 508 224 HOH HOH . N 5 HOH B 109 509 225 HOH HOH . N 5 HOH B 110 510 227 HOH HOH . N 5 HOH B 111 511 229 HOH HOH . N 5 HOH B 112 512 230 HOH HOH . N 5 HOH B 113 513 232 HOH HOH . N 5 HOH B 114 514 233 HOH HOH . N 5 HOH B 115 515 235 HOH HOH . N 5 HOH B 116 516 236 HOH HOH . N 5 HOH B 117 517 237 HOH HOH . N 5 HOH B 118 518 240 HOH HOH . N 5 HOH B 119 519 241 HOH HOH . N 5 HOH B 120 520 242 HOH HOH . N 5 HOH B 121 521 245 HOH HOH . N 5 HOH B 122 522 246 HOH HOH . N 5 HOH B 123 523 247 HOH HOH . N 5 HOH B 124 524 251 HOH HOH . N 5 HOH B 125 525 252 HOH HOH . N 5 HOH B 126 526 253 HOH HOH . N 5 HOH B 127 527 254 HOH HOH . N 5 HOH B 128 528 256 HOH HOH . N 5 HOH B 129 529 259 HOH HOH . N 5 HOH B 130 530 260 HOH HOH . N 5 HOH B 131 531 261 HOH HOH . N 5 HOH B 132 532 264 HOH HOH . N 5 HOH B 133 533 266 HOH HOH . N 5 HOH B 134 534 267 HOH HOH . N 5 HOH B 135 535 271 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -0.365 -26.72 -2.644 1 34.49 ? C1 EDO 303 A 1 HETATM 2 O O1 EDO . . . E 3 -0.123 -28.085 -2.285 1 41.35 ? O1 EDO 303 A 1 HETATM 3 C C2 EDO . . . E 3 -0.679 -26.523 -4.121 1 33.02 ? C2 EDO 303 A 1 HETATM 4 O O2 EDO . . . E 3 0.013 -27.388 -5.049 1 31.8 ? O2 EDO 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #