data_4F38 # _model_server_result.job_id OE-aJh0KgY2pNxm6R9_ZUA _model_server_result.datetime_utc '2024-11-16 23:48:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4F38 # _exptl.entry_id 4F38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.484 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GERAN-8-YL GERAN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F38 _cell.length_a 46 _cell.length_b 71.576 _cell.length_c 136.03 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 192 A CYS 190 1_555 C C1 GER . A GER 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? metalc ? metalc1 A OG1 THR 21 A THR 19 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A O THR 39 A THR 37 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A OD1 ASP 47 A ASP 45 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? metalc ? metalc4 A OD2 ASP 47 A ASP 45 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc5 D MG MG . A MG 202 1_555 F O2G GNP . A GNP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc6 D MG MG . A MG 202 1_555 F O2B GNP . A GNP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc7 D MG MG . A MG 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc8 E MG MG . A MG 203 1_555 G O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? # _chem_comp.formula 'C20 H34' _chem_comp.formula_weight 274.484 _chem_comp.id GER _chem_comp.mon_nstd_flag . _chem_comp.name 'GERAN-8-YL GERAN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GER sing 83 n n C1 H11 GER sing 84 n n C1 H12 GER sing 85 n n C1 H13 GER sing 86 n n C2 C3 GER doub 87 e n C2 H21 GER sing 88 n n C3 C4 GER sing 89 n n C3 C5 GER sing 90 n n C4 H41 GER sing 91 n n C4 H42 GER sing 92 n n C4 H43 GER sing 93 n n C5 C6 GER sing 94 n n C5 H51 GER sing 95 n n C5 H52 GER sing 96 n n C6 C7 GER sing 97 n n C6 H61 GER sing 98 n n C6 H62 GER sing 99 n n C7 C8 GER doub 100 e n C7 H71 GER sing 101 n n C8 C9 GER sing 102 n n C8 C10 GER sing 103 n n C9 H91 GER sing 104 n n C9 H92 GER sing 105 n n C9 H93 GER sing 106 n n C10 C11 GER sing 107 n n C10 H101 GER sing 108 n n C10 H102 GER sing 109 n n C11 C12 GER sing 110 n n C11 H111 GER sing 111 n n C11 H112 GER sing 112 n n C12 C13 GER doub 113 e n C12 H121 GER sing 114 n n C13 C14 GER sing 115 n n C13 C15 GER sing 116 n n C14 H141 GER sing 117 n n C14 H142 GER sing 118 n n C14 H143 GER sing 119 n n C15 C16 GER sing 120 n n C15 H151 GER sing 121 n n C15 H152 GER sing 122 n n C16 C17 GER sing 123 n n C16 H161 GER sing 124 n n C16 H162 GER sing 125 n n C17 C18 GER doub 126 n n C17 H171 GER sing 127 n n C18 C19 GER sing 128 n n C18 C20 GER sing 129 n n C19 H191 GER sing 130 n n C19 H192 GER sing 131 n n C19 H193 GER sing 132 n n C20 H201 GER sing 133 n n C20 H202 GER sing 134 n n C20 H203 GER sing 135 n n # _atom_sites.entry_id 4F38 _atom_sites.fract_transf_matrix[1][1] 0.021739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GER A 1 201 190 GER CYS . D 4 MG A 1 202 301 MG MG . E 4 MG A 1 203 302 MG MG . F 5 GNP A 1 204 1 GNP GNP . G 6 HOH A 1 301 1 HOH HOH . G 6 HOH A 2 302 3 HOH HOH . G 6 HOH A 3 303 4 HOH HOH . G 6 HOH A 4 304 6 HOH HOH . G 6 HOH A 5 305 11 HOH HOH . G 6 HOH A 6 306 16 HOH HOH . G 6 HOH A 7 307 18 HOH HOH . G 6 HOH A 8 308 21 HOH HOH . G 6 HOH A 9 309 22 HOH HOH . G 6 HOH A 10 310 23 HOH HOH . G 6 HOH A 11 311 30 HOH HOH . G 6 HOH A 12 312 32 HOH HOH . G 6 HOH A 13 313 36 HOH HOH . G 6 HOH A 14 314 39 HOH HOH . G 6 HOH A 15 315 55 HOH HOH . G 6 HOH A 16 316 63 HOH HOH . G 6 HOH A 17 317 69 HOH HOH . G 6 HOH A 18 318 72 HOH HOH . G 6 HOH A 19 319 77 HOH HOH . G 6 HOH A 20 320 90 HOH HOH . G 6 HOH A 21 321 97 HOH HOH . G 6 HOH A 22 322 98 HOH HOH . G 6 HOH A 23 323 100 HOH HOH . G 6 HOH A 24 324 102 HOH HOH . G 6 HOH A 25 325 103 HOH HOH . G 6 HOH A 26 326 104 HOH HOH . G 6 HOH A 27 327 105 HOH HOH . G 6 HOH A 28 328 106 HOH HOH . G 6 HOH A 29 329 112 HOH HOH . G 6 HOH A 30 330 114 HOH HOH . G 6 HOH A 31 331 115 HOH HOH . G 6 HOH A 32 332 116 HOH HOH . G 6 HOH A 33 333 117 HOH HOH . G 6 HOH A 34 334 118 HOH HOH . G 6 HOH A 35 335 119 HOH HOH . H 6 HOH B 1 301 5 HOH HOH . H 6 HOH B 2 302 7 HOH HOH . H 6 HOH B 3 303 8 HOH HOH . H 6 HOH B 4 304 9 HOH HOH . H 6 HOH B 5 305 12 HOH HOH . H 6 HOH B 6 306 14 HOH HOH . H 6 HOH B 7 307 15 HOH HOH . H 6 HOH B 8 308 17 HOH HOH . H 6 HOH B 9 309 19 HOH HOH . H 6 HOH B 10 310 20 HOH HOH . H 6 HOH B 11 311 25 HOH HOH . H 6 HOH B 12 312 26 HOH HOH . H 6 HOH B 13 313 27 HOH HOH . H 6 HOH B 14 314 29 HOH HOH . H 6 HOH B 15 315 35 HOH HOH . H 6 HOH B 16 316 37 HOH HOH . H 6 HOH B 17 317 41 HOH HOH . H 6 HOH B 18 318 42 HOH HOH . H 6 HOH B 19 319 43 HOH HOH . H 6 HOH B 20 320 45 HOH HOH . H 6 HOH B 21 321 50 HOH HOH . H 6 HOH B 22 322 51 HOH HOH . H 6 HOH B 23 323 52 HOH HOH . H 6 HOH B 24 324 53 HOH HOH . H 6 HOH B 25 325 56 HOH HOH . H 6 HOH B 26 326 62 HOH HOH . H 6 HOH B 27 327 64 HOH HOH . H 6 HOH B 28 328 66 HOH HOH . H 6 HOH B 29 329 67 HOH HOH . H 6 HOH B 30 330 68 HOH HOH . H 6 HOH B 31 331 70 HOH HOH . H 6 HOH B 32 332 71 HOH HOH . H 6 HOH B 33 333 73 HOH HOH . H 6 HOH B 34 334 75 HOH HOH . H 6 HOH B 35 335 81 HOH HOH . H 6 HOH B 36 336 82 HOH HOH . H 6 HOH B 37 337 83 HOH HOH . H 6 HOH B 38 338 84 HOH HOH . H 6 HOH B 39 339 86 HOH HOH . H 6 HOH B 40 340 87 HOH HOH . H 6 HOH B 41 341 92 HOH HOH . H 6 HOH B 42 342 95 HOH HOH . H 6 HOH B 43 343 96 HOH HOH . H 6 HOH B 44 344 113 HOH HOH . H 6 HOH B 45 345 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GER . . . C 3 7.637 18.843 17.754 1 80.77 ? C1 GER 201 A 1 HETATM 2 C C2 GER . . . C 3 6.473 19.001 16.777 1 77.16 ? C2 GER 201 A 1 HETATM 3 C C3 GER . . . C 3 6.246 20.37 16.117 1 74.39 ? C3 GER 201 A 1 HETATM 4 C C4 GER . . . C 3 7.254 21.512 16.28 1 72.84 ? C4 GER 201 A 1 HETATM 5 C C5 GER . . . C 3 5.037 20.531 15.2 1 71.39 ? C5 GER 201 A 1 HETATM 6 C C6 GER . . . C 3 3.973 19.441 15.437 1 67.34 ? C6 GER 201 A 1 HETATM 7 C C7 GER . . . C 3 2.605 20.104 15.341 1 62.69 ? C7 GER 201 A 1 HETATM 8 C C8 GER . . . C 3 1.424 19.246 14.945 1 58.42 ? C8 GER 201 A 1 HETATM 9 C C9 GER . . . C 3 1.62 17.779 14.666 1 57.33 ? C9 GER 201 A 1 HETATM 10 C C10 GER . . . C 3 0.049 19.902 14.84 1 54.13 ? C10 GER 201 A 1 HETATM 11 C C11 GER . . . C 3 -0.911 19.141 13.961 1 49.5 ? C11 GER 201 A 1 HETATM 12 C C12 GER . . . C 3 -2.177 18.83 14.708 1 44.83 ? C12 GER 201 A 1 HETATM 13 C C13 GER . . . C 3 -3.48 19.209 14.053 1 41.08 ? C13 GER 201 A 1 HETATM 14 C C14 GER . . . C 3 -3.468 19.805 12.67 1 41.05 ? C14 GER 201 A 1 HETATM 15 C C15 GER . . . C 3 -4.784 18.843 14.725 1 38.99 ? C15 GER 201 A 1 HETATM 16 C C16 GER . . . C 3 -5.954 19.695 14.312 1 37.16 ? C16 GER 201 A 1 HETATM 17 C C17 GER . . . C 3 -6.997 18.828 13.667 1 35.31 ? C17 GER 201 A 1 HETATM 18 C C18 GER . . . C 3 -8.345 19.458 13.468 1 36.6 ? C18 GER 201 A 1 HETATM 19 C C19 GER . . . C 3 -9.45 18.707 12.772 1 34.65 ? C19 GER 201 A 1 HETATM 20 C C20 GER . . . C 3 -8.604 20.871 13.898 1 37.73 ? C20 GER 201 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #