data_4F38 # _model_server_result.job_id tzJaRgUG9nHUYZNFMhuM4g _model_server_result.datetime_utc '2024-11-16 23:50:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4F38 # _exptl.entry_id 4F38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F38 _cell.length_a 46 _cell.length_b 71.576 _cell.length_c 136.03 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 192 A CYS 190 1_555 C C1 GER . A GER 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? metalc ? metalc1 A OG1 THR 21 A THR 19 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A O THR 39 A THR 37 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A OD1 ASP 47 A ASP 45 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? metalc ? metalc4 A OD2 ASP 47 A ASP 45 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc5 D MG MG . A MG 202 1_555 F O2G GNP . A GNP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc6 D MG MG . A MG 202 1_555 F O2B GNP . A GNP 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc7 D MG MG . A MG 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc8 E MG MG . A MG 203 1_555 G O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4F38 _atom_sites.fract_transf_matrix[1][1] 0.021739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GER A 1 201 190 GER CYS . D 4 MG A 1 202 301 MG MG . E 4 MG A 1 203 302 MG MG . F 5 GNP A 1 204 1 GNP GNP . G 6 HOH A 1 301 1 HOH HOH . G 6 HOH A 2 302 3 HOH HOH . G 6 HOH A 3 303 4 HOH HOH . G 6 HOH A 4 304 6 HOH HOH . G 6 HOH A 5 305 11 HOH HOH . G 6 HOH A 6 306 16 HOH HOH . G 6 HOH A 7 307 18 HOH HOH . G 6 HOH A 8 308 21 HOH HOH . G 6 HOH A 9 309 22 HOH HOH . G 6 HOH A 10 310 23 HOH HOH . G 6 HOH A 11 311 30 HOH HOH . G 6 HOH A 12 312 32 HOH HOH . G 6 HOH A 13 313 36 HOH HOH . G 6 HOH A 14 314 39 HOH HOH . G 6 HOH A 15 315 55 HOH HOH . G 6 HOH A 16 316 63 HOH HOH . G 6 HOH A 17 317 69 HOH HOH . G 6 HOH A 18 318 72 HOH HOH . G 6 HOH A 19 319 77 HOH HOH . G 6 HOH A 20 320 90 HOH HOH . G 6 HOH A 21 321 97 HOH HOH . G 6 HOH A 22 322 98 HOH HOH . G 6 HOH A 23 323 100 HOH HOH . G 6 HOH A 24 324 102 HOH HOH . G 6 HOH A 25 325 103 HOH HOH . G 6 HOH A 26 326 104 HOH HOH . G 6 HOH A 27 327 105 HOH HOH . G 6 HOH A 28 328 106 HOH HOH . G 6 HOH A 29 329 112 HOH HOH . G 6 HOH A 30 330 114 HOH HOH . G 6 HOH A 31 331 115 HOH HOH . G 6 HOH A 32 332 116 HOH HOH . G 6 HOH A 33 333 117 HOH HOH . G 6 HOH A 34 334 118 HOH HOH . G 6 HOH A 35 335 119 HOH HOH . H 6 HOH B 1 301 5 HOH HOH . H 6 HOH B 2 302 7 HOH HOH . H 6 HOH B 3 303 8 HOH HOH . H 6 HOH B 4 304 9 HOH HOH . H 6 HOH B 5 305 12 HOH HOH . H 6 HOH B 6 306 14 HOH HOH . H 6 HOH B 7 307 15 HOH HOH . H 6 HOH B 8 308 17 HOH HOH . H 6 HOH B 9 309 19 HOH HOH . H 6 HOH B 10 310 20 HOH HOH . H 6 HOH B 11 311 25 HOH HOH . H 6 HOH B 12 312 26 HOH HOH . H 6 HOH B 13 313 27 HOH HOH . H 6 HOH B 14 314 29 HOH HOH . H 6 HOH B 15 315 35 HOH HOH . H 6 HOH B 16 316 37 HOH HOH . H 6 HOH B 17 317 41 HOH HOH . H 6 HOH B 18 318 42 HOH HOH . H 6 HOH B 19 319 43 HOH HOH . H 6 HOH B 20 320 45 HOH HOH . H 6 HOH B 21 321 50 HOH HOH . H 6 HOH B 22 322 51 HOH HOH . H 6 HOH B 23 323 52 HOH HOH . H 6 HOH B 24 324 53 HOH HOH . H 6 HOH B 25 325 56 HOH HOH . H 6 HOH B 26 326 62 HOH HOH . H 6 HOH B 27 327 64 HOH HOH . H 6 HOH B 28 328 66 HOH HOH . H 6 HOH B 29 329 67 HOH HOH . H 6 HOH B 30 330 68 HOH HOH . H 6 HOH B 31 331 70 HOH HOH . H 6 HOH B 32 332 71 HOH HOH . H 6 HOH B 33 333 73 HOH HOH . H 6 HOH B 34 334 75 HOH HOH . H 6 HOH B 35 335 81 HOH HOH . H 6 HOH B 36 336 82 HOH HOH . H 6 HOH B 37 337 83 HOH HOH . H 6 HOH B 38 338 84 HOH HOH . H 6 HOH B 39 339 86 HOH HOH . H 6 HOH B 40 340 87 HOH HOH . H 6 HOH B 41 341 92 HOH HOH . H 6 HOH B 42 342 95 HOH HOH . H 6 HOH B 43 343 96 HOH HOH . H 6 HOH B 44 344 113 HOH HOH . H 6 HOH B 45 345 122 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -21.751 _atom_site.Cartn_y -16.264 _atom_site.Cartn_z 24.323 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #