data_4F3C # _model_server_result.job_id KREva8Foe-PcBrm5Sx7P6g _model_server_result.datetime_utc '2024-11-25 09:52:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 4F3C # _exptl.entry_id 4F3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(butylsulfanyl)methyl]pyrrolidin-3-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.78 _cell.angle_gamma 90 _cell.entry_id 4F3C _cell.length_a 68.05 _cell.length_b 46.61 _cell.length_c 70.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C16 H25 N5 O S' _chem_comp.formula_weight 335.468 _chem_comp.id BIG _chem_comp.mon_nstd_flag . _chem_comp.name (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(butylsulfanyl)methyl]pyrrolidin-3-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'butylthio-DADMe-Immucillin A' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N3 BIG doub 70 n y C2 N1 BIG sing 71 n y C5 C4 BIG doub 72 n y C5 N7 BIG sing 73 n y C5 C6 BIG sing 74 n y C4 N3 BIG sing 75 n y C4 C9 BIG sing 76 n y C8 N7 BIG sing 77 n y C8 C9 BIG doub 78 n y O3' C3' BIG sing 79 n n C3' C4' BIG sing 80 n n C3' C2' BIG sing 81 n n C4' C5' BIG sing 82 n n C4' C1' BIG sing 83 n n C5' S5' BIG sing 84 n n S5' C20 BIG sing 85 n n C20 C21 BIG sing 86 n n C21 C22 BIG sing 87 n n C22 C23 BIG sing 88 n n C1' N1' BIG sing 89 n n N1' C2' BIG sing 90 n n N1' C10 BIG sing 91 n n C10 C9 BIG sing 92 n n C6 N6 BIG sing 93 n n C6 N1 BIG doub 94 n y C2 H2 BIG sing 95 n n C8 H8 BIG sing 96 n n O3' HO3' BIG sing 97 n n C3' H3' BIG sing 98 n n C4' H4' BIG sing 99 n n C5' H5' BIG sing 100 n n C5' "H5'A" BIG sing 101 n n C20 H20 BIG sing 102 n n C20 H20A BIG sing 103 n n C21 H21 BIG sing 104 n n C21 H21A BIG sing 105 n n C22 H22 BIG sing 106 n n C22 H22A BIG sing 107 n n C23 H23 BIG sing 108 n n C23 H23A BIG sing 109 n n C23 H23B BIG sing 110 n n C1' H1' BIG sing 111 n n C1' "H1'A" BIG sing 112 n n C2' H2' BIG sing 113 n n C2' "H2'A" BIG sing 114 n n C10 H10 BIG sing 115 n n C10 H10A BIG sing 116 n n N7 HN7 BIG sing 117 n n N6 HN6 BIG sing 118 n n N6 HN6A BIG sing 119 n n # _atom_sites.entry_id 4F3C _atom_sites.fract_transf_matrix[1][1] 0.014695 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006784 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BIG A 1 301 1 BIG BIG . D 3 EDO A 1 302 2 EDO EDO . E 2 BIG B 1 301 2 BIG BIG . F 3 EDO B 1 302 1 EDO EDO . G 3 EDO B 1 303 3 EDO EDO . H 4 HOH A 1 401 1 HOH HOH . H 4 HOH A 2 402 2 HOH HOH . H 4 HOH A 3 403 3 HOH HOH . H 4 HOH A 4 404 6 HOH HOH . H 4 HOH A 5 405 11 HOH HOH . H 4 HOH A 6 406 13 HOH HOH . H 4 HOH A 7 407 14 HOH HOH . H 4 HOH A 8 408 16 HOH HOH . H 4 HOH A 9 409 18 HOH HOH . H 4 HOH A 10 410 19 HOH HOH . H 4 HOH A 11 411 24 HOH HOH . H 4 HOH A 12 412 25 HOH HOH . H 4 HOH A 13 413 26 HOH HOH . H 4 HOH A 14 414 28 HOH HOH . H 4 HOH A 15 415 30 HOH HOH . H 4 HOH A 16 416 31 HOH HOH . H 4 HOH A 17 417 37 HOH HOH . H 4 HOH A 18 418 41 HOH HOH . H 4 HOH A 19 419 42 HOH HOH . H 4 HOH A 20 420 45 HOH HOH . H 4 HOH A 21 421 47 HOH HOH . H 4 HOH A 22 422 49 HOH HOH . H 4 HOH A 23 423 50 HOH HOH . H 4 HOH A 24 424 51 HOH HOH . H 4 HOH A 25 425 52 HOH HOH . H 4 HOH A 26 426 53 HOH HOH . H 4 HOH A 27 427 57 HOH HOH . H 4 HOH A 28 428 58 HOH HOH . H 4 HOH A 29 429 60 HOH HOH . H 4 HOH A 30 430 63 HOH HOH . H 4 HOH A 31 431 69 HOH HOH . H 4 HOH A 32 432 71 HOH HOH . H 4 HOH A 33 433 72 HOH HOH . H 4 HOH A 34 434 74 HOH HOH . H 4 HOH A 35 435 78 HOH HOH . H 4 HOH A 36 436 81 HOH HOH . H 4 HOH A 37 437 83 HOH HOH . H 4 HOH A 38 438 85 HOH HOH . H 4 HOH A 39 439 86 HOH HOH . H 4 HOH A 40 440 89 HOH HOH . H 4 HOH A 41 441 94 HOH HOH . H 4 HOH A 42 442 95 HOH HOH . H 4 HOH A 43 443 96 HOH HOH . H 4 HOH A 44 444 98 HOH HOH . H 4 HOH A 45 445 99 HOH HOH . H 4 HOH A 46 446 102 HOH HOH . H 4 HOH A 47 447 104 HOH HOH . H 4 HOH A 48 448 106 HOH HOH . H 4 HOH A 49 449 112 HOH HOH . H 4 HOH A 50 450 113 HOH HOH . H 4 HOH A 51 451 114 HOH HOH . H 4 HOH A 52 452 115 HOH HOH . H 4 HOH A 53 453 118 HOH HOH . H 4 HOH A 54 454 119 HOH HOH . H 4 HOH A 55 455 125 HOH HOH . H 4 HOH A 56 456 128 HOH HOH . H 4 HOH A 57 457 132 HOH HOH . H 4 HOH A 58 458 133 HOH HOH . H 4 HOH A 59 459 134 HOH HOH . H 4 HOH A 60 460 138 HOH HOH . H 4 HOH A 61 461 142 HOH HOH . H 4 HOH A 62 462 144 HOH HOH . H 4 HOH A 63 463 146 HOH HOH . H 4 HOH A 64 464 148 HOH HOH . H 4 HOH A 65 465 155 HOH HOH . H 4 HOH A 66 466 160 HOH HOH . I 4 HOH B 1 401 4 HOH HOH . I 4 HOH B 2 402 5 HOH HOH . I 4 HOH B 3 403 7 HOH HOH . I 4 HOH B 4 404 8 HOH HOH . I 4 HOH B 5 405 9 HOH HOH . I 4 HOH B 6 406 10 HOH HOH . I 4 HOH B 7 407 12 HOH HOH . I 4 HOH B 8 408 15 HOH HOH . I 4 HOH B 9 409 17 HOH HOH . I 4 HOH B 10 410 20 HOH HOH . I 4 HOH B 11 411 21 HOH HOH . I 4 HOH B 12 412 22 HOH HOH . I 4 HOH B 13 413 23 HOH HOH . I 4 HOH B 14 414 27 HOH HOH . I 4 HOH B 15 415 29 HOH HOH . I 4 HOH B 16 416 32 HOH HOH . I 4 HOH B 17 417 33 HOH HOH . I 4 HOH B 18 418 34 HOH HOH . I 4 HOH B 19 419 35 HOH HOH . I 4 HOH B 20 420 36 HOH HOH . I 4 HOH B 21 421 38 HOH HOH . I 4 HOH B 22 422 39 HOH HOH . I 4 HOH B 23 423 40 HOH HOH . I 4 HOH B 24 424 43 HOH HOH . I 4 HOH B 25 425 44 HOH HOH . I 4 HOH B 26 426 46 HOH HOH . I 4 HOH B 27 427 48 HOH HOH . I 4 HOH B 28 428 54 HOH HOH . I 4 HOH B 29 429 55 HOH HOH . I 4 HOH B 30 430 56 HOH HOH . I 4 HOH B 31 431 59 HOH HOH . I 4 HOH B 32 432 61 HOH HOH . I 4 HOH B 33 433 62 HOH HOH . I 4 HOH B 34 434 64 HOH HOH . I 4 HOH B 35 435 65 HOH HOH . I 4 HOH B 36 436 66 HOH HOH . I 4 HOH B 37 437 67 HOH HOH . I 4 HOH B 38 438 68 HOH HOH . I 4 HOH B 39 439 70 HOH HOH . I 4 HOH B 40 440 73 HOH HOH . I 4 HOH B 41 441 75 HOH HOH . I 4 HOH B 42 442 76 HOH HOH . I 4 HOH B 43 443 77 HOH HOH . I 4 HOH B 44 444 79 HOH HOH . I 4 HOH B 45 445 80 HOH HOH . I 4 HOH B 46 446 82 HOH HOH . I 4 HOH B 47 447 84 HOH HOH . I 4 HOH B 48 448 87 HOH HOH . I 4 HOH B 49 449 88 HOH HOH . I 4 HOH B 50 450 90 HOH HOH . I 4 HOH B 51 451 91 HOH HOH . I 4 HOH B 52 452 92 HOH HOH . I 4 HOH B 53 453 93 HOH HOH . I 4 HOH B 54 454 97 HOH HOH . I 4 HOH B 55 455 100 HOH HOH . I 4 HOH B 56 456 101 HOH HOH . I 4 HOH B 57 457 103 HOH HOH . I 4 HOH B 58 458 105 HOH HOH . I 4 HOH B 59 459 107 HOH HOH . I 4 HOH B 60 460 108 HOH HOH . I 4 HOH B 61 461 109 HOH HOH . I 4 HOH B 62 462 110 HOH HOH . I 4 HOH B 63 463 111 HOH HOH . I 4 HOH B 64 464 116 HOH HOH . I 4 HOH B 65 465 117 HOH HOH . I 4 HOH B 66 466 120 HOH HOH . I 4 HOH B 67 467 121 HOH HOH . I 4 HOH B 68 468 122 HOH HOH . I 4 HOH B 69 469 123 HOH HOH . I 4 HOH B 70 470 124 HOH HOH . I 4 HOH B 71 471 126 HOH HOH . I 4 HOH B 72 472 127 HOH HOH . I 4 HOH B 73 473 129 HOH HOH . I 4 HOH B 74 474 130 HOH HOH . I 4 HOH B 75 475 131 HOH HOH . I 4 HOH B 76 476 135 HOH HOH . I 4 HOH B 77 477 136 HOH HOH . I 4 HOH B 78 478 137 HOH HOH . I 4 HOH B 79 479 139 HOH HOH . I 4 HOH B 80 480 140 HOH HOH . I 4 HOH B 81 481 141 HOH HOH . I 4 HOH B 82 482 143 HOH HOH . I 4 HOH B 83 483 145 HOH HOH . I 4 HOH B 84 484 147 HOH HOH . I 4 HOH B 85 485 149 HOH HOH . I 4 HOH B 86 486 150 HOH HOH . I 4 HOH B 87 487 151 HOH HOH . I 4 HOH B 88 488 152 HOH HOH . I 4 HOH B 89 489 153 HOH HOH . I 4 HOH B 90 490 154 HOH HOH . I 4 HOH B 91 491 156 HOH HOH . I 4 HOH B 92 492 157 HOH HOH . I 4 HOH B 93 493 158 HOH HOH . I 4 HOH B 94 494 159 HOH HOH . I 4 HOH B 95 495 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BIG . . . E 2 -11.741 -10.578 11.343 1 19.97 ? C2 BIG 301 B 1 HETATM 2 C C5 BIG . . . E 2 -9.084 -11.193 11.851 1 20.18 ? C5 BIG 301 B 1 HETATM 3 C C4 BIG . . . E 2 -9.791 -10.07 12.467 1 18.85 ? C4 BIG 301 B 1 HETATM 4 C C8 BIG . . . E 2 -7.661 -10.142 13.216 1 18.93 ? C8 BIG 301 B 1 HETATM 5 O O3' BIG . . . E 2 -11.632 -7.652 17.546 1 18.43 ? O3' BIG 301 B 1 HETATM 6 C C3' BIG . . . E 2 -11.764 -8.769 16.617 1 18.78 ? C3' BIG 301 B 1 HETATM 7 C C4' BIG . . . E 2 -10.785 -9.884 16.95 1 19.34 ? C4' BIG 301 B 1 HETATM 8 C C5' BIG . . . E 2 -11.166 -11.225 16.286 1 21.32 ? C5' BIG 301 B 1 HETATM 9 S S5' BIG . . . E 2 -12.403 -12.019 17.229 1 24.14 ? S5' BIG 301 B 1 HETATM 10 C C20 BIG . . . E 2 -11.472 -12.637 18.592 1 25.12 ? C20 BIG 301 B 1 HETATM 11 C C21 BIG . . . E 2 -12.371 -13.612 19.343 1 27.48 ? C21 BIG 301 B 1 HETATM 12 C C22 BIG . . . E 2 -11.669 -14.349 20.481 1 28.59 ? C22 BIG 301 B 1 HETATM 13 C C23 BIG . . . E 2 -11.993 -13.67 21.786 1 30.55 ? C23 BIG 301 B 1 HETATM 14 C C1' BIG . . . E 2 -9.47 -9.411 16.337 1 17.94 ? C1' BIG 301 B 1 HETATM 15 N N1' BIG . . . E 2 -9.843 -8.276 15.449 1 18.21 ? N1' BIG 301 B 1 HETATM 16 C C2' BIG . . . E 2 -11.302 -8.338 15.233 1 17.8 ? C2' BIG 301 B 1 HETATM 17 C C10 BIG . . . E 2 -9.057 -8.149 14.207 1 17.99 ? C10 BIG 301 B 1 HETATM 18 N N7 BIG . . . E 2 -7.835 -11.181 12.324 1 20.31 ? N7 BIG 301 B 1 HETATM 19 C C6 BIG . . . E 2 -9.877 -11.997 10.914 1 21.32 ? C6 BIG 301 B 1 HETATM 20 N N6 BIG . . . E 2 -9.337 -13.084 10.272 1 22.08 ? N6 BIG 301 B 1 HETATM 21 N N3 BIG . . . E 2 -11.09 -9.797 12.206 1 18.48 ? N3 BIG 301 B 1 HETATM 22 C C9 BIG . . . E 2 -8.841 -9.407 13.372 1 18.41 ? C9 BIG 301 B 1 HETATM 23 N N1 BIG . . . E 2 -11.167 -11.629 10.735 1 20.2 ? N1 BIG 301 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #