data_4F3K # _model_server_result.job_id VvG_L3JFq3BgWILOrAUogQ _model_server_result.datetime_utc '2024-11-29 03:21:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 4F3K # _exptl.entry_id 4F3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F3K _cell.length_a 52.49 _cell.length_b 70.49 _cell.length_c 122.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4F3K _atom_sites.fract_transf_matrix[1][1] 0.019051 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HCE A 1 301 1 HCE HCE . D 3 EDO A 1 302 1 EDO EDO . E 2 HCE B 1 301 2 HCE HCE . F 3 EDO B 1 302 2 EDO EDO . G 4 HOH A 1 401 2 HOH HOH . G 4 HOH A 2 402 3 HOH HOH . G 4 HOH A 3 403 6 HOH HOH . G 4 HOH A 4 404 7 HOH HOH . G 4 HOH A 5 405 9 HOH HOH . G 4 HOH A 6 406 10 HOH HOH . G 4 HOH A 7 407 12 HOH HOH . G 4 HOH A 8 408 13 HOH HOH . G 4 HOH A 9 409 14 HOH HOH . G 4 HOH A 10 410 15 HOH HOH . G 4 HOH A 11 411 16 HOH HOH . G 4 HOH A 12 412 19 HOH HOH . G 4 HOH A 13 413 20 HOH HOH . G 4 HOH A 14 414 22 HOH HOH . G 4 HOH A 15 415 24 HOH HOH . G 4 HOH A 16 416 28 HOH HOH . G 4 HOH A 17 417 29 HOH HOH . G 4 HOH A 18 418 34 HOH HOH . G 4 HOH A 19 419 37 HOH HOH . G 4 HOH A 20 420 38 HOH HOH . G 4 HOH A 21 421 40 HOH HOH . G 4 HOH A 22 422 41 HOH HOH . G 4 HOH A 23 423 46 HOH HOH . G 4 HOH A 24 424 47 HOH HOH . G 4 HOH A 25 425 48 HOH HOH . G 4 HOH A 26 426 49 HOH HOH . G 4 HOH A 27 427 51 HOH HOH . G 4 HOH A 28 428 53 HOH HOH . G 4 HOH A 29 429 57 HOH HOH . G 4 HOH A 30 430 60 HOH HOH . G 4 HOH A 31 431 61 HOH HOH . G 4 HOH A 32 432 62 HOH HOH . G 4 HOH A 33 433 66 HOH HOH . G 4 HOH A 34 434 68 HOH HOH . G 4 HOH A 35 435 71 HOH HOH . G 4 HOH A 36 436 75 HOH HOH . G 4 HOH A 37 437 76 HOH HOH . G 4 HOH A 38 438 78 HOH HOH . G 4 HOH A 39 439 79 HOH HOH . G 4 HOH A 40 440 81 HOH HOH . G 4 HOH A 41 441 83 HOH HOH . G 4 HOH A 42 442 86 HOH HOH . G 4 HOH A 43 443 88 HOH HOH . G 4 HOH A 44 444 89 HOH HOH . G 4 HOH A 45 445 91 HOH HOH . G 4 HOH A 46 446 92 HOH HOH . G 4 HOH A 47 447 97 HOH HOH . G 4 HOH A 48 448 99 HOH HOH . G 4 HOH A 49 449 100 HOH HOH . G 4 HOH A 50 450 102 HOH HOH . G 4 HOH A 51 451 103 HOH HOH . G 4 HOH A 52 452 104 HOH HOH . G 4 HOH A 53 453 116 HOH HOH . G 4 HOH A 54 454 117 HOH HOH . G 4 HOH A 55 455 121 HOH HOH . G 4 HOH A 56 456 122 HOH HOH . G 4 HOH A 57 457 126 HOH HOH . G 4 HOH A 58 458 127 HOH HOH . G 4 HOH A 59 459 129 HOH HOH . G 4 HOH A 60 460 130 HOH HOH . G 4 HOH A 61 461 131 HOH HOH . G 4 HOH A 62 462 132 HOH HOH . G 4 HOH A 63 463 133 HOH HOH . G 4 HOH A 64 464 134 HOH HOH . G 4 HOH A 65 465 135 HOH HOH . G 4 HOH A 66 466 136 HOH HOH . G 4 HOH A 67 467 139 HOH HOH . G 4 HOH A 68 468 140 HOH HOH . G 4 HOH A 69 469 142 HOH HOH . G 4 HOH A 70 470 145 HOH HOH . G 4 HOH A 71 471 146 HOH HOH . G 4 HOH A 72 472 147 HOH HOH . G 4 HOH A 73 473 148 HOH HOH . G 4 HOH A 74 474 151 HOH HOH . G 4 HOH A 75 475 152 HOH HOH . G 4 HOH A 76 476 153 HOH HOH . G 4 HOH A 77 477 154 HOH HOH . G 4 HOH A 78 478 155 HOH HOH . G 4 HOH A 79 479 157 HOH HOH . G 4 HOH A 80 480 159 HOH HOH . G 4 HOH A 81 481 161 HOH HOH . G 4 HOH A 82 482 164 HOH HOH . G 4 HOH A 83 483 167 HOH HOH . G 4 HOH A 84 484 171 HOH HOH . G 4 HOH A 85 485 172 HOH HOH . G 4 HOH A 86 486 173 HOH HOH . G 4 HOH A 87 487 174 HOH HOH . G 4 HOH A 88 488 176 HOH HOH . G 4 HOH A 89 489 181 HOH HOH . G 4 HOH A 90 490 183 HOH HOH . G 4 HOH A 91 491 185 HOH HOH . G 4 HOH A 92 492 186 HOH HOH . G 4 HOH A 93 493 197 HOH HOH . G 4 HOH A 94 494 198 HOH HOH . G 4 HOH A 95 495 199 HOH HOH . G 4 HOH A 96 496 200 HOH HOH . G 4 HOH A 97 497 203 HOH HOH . G 4 HOH A 98 498 204 HOH HOH . G 4 HOH A 99 499 207 HOH HOH . G 4 HOH A 100 500 208 HOH HOH . G 4 HOH A 101 501 213 HOH HOH . G 4 HOH A 102 502 217 HOH HOH . G 4 HOH A 103 503 223 HOH HOH . G 4 HOH A 104 504 224 HOH HOH . G 4 HOH A 105 505 226 HOH HOH . G 4 HOH A 106 506 232 HOH HOH . G 4 HOH A 107 507 233 HOH HOH . G 4 HOH A 108 508 234 HOH HOH . G 4 HOH A 109 509 236 HOH HOH . G 4 HOH A 110 510 237 HOH HOH . G 4 HOH A 111 511 238 HOH HOH . G 4 HOH A 112 512 240 HOH HOH . G 4 HOH A 113 513 241 HOH HOH . G 4 HOH A 114 514 242 HOH HOH . G 4 HOH A 115 515 244 HOH HOH . G 4 HOH A 116 516 245 HOH HOH . G 4 HOH A 117 517 246 HOH HOH . G 4 HOH A 118 518 247 HOH HOH . H 4 HOH B 1 401 1 HOH HOH . H 4 HOH B 2 402 4 HOH HOH . H 4 HOH B 3 403 5 HOH HOH . H 4 HOH B 4 404 8 HOH HOH . H 4 HOH B 5 405 11 HOH HOH . H 4 HOH B 6 406 17 HOH HOH . H 4 HOH B 7 407 18 HOH HOH . H 4 HOH B 8 408 21 HOH HOH . H 4 HOH B 9 409 23 HOH HOH . H 4 HOH B 10 410 25 HOH HOH . H 4 HOH B 11 411 26 HOH HOH . H 4 HOH B 12 412 27 HOH HOH . H 4 HOH B 13 413 30 HOH HOH . H 4 HOH B 14 414 31 HOH HOH . H 4 HOH B 15 415 32 HOH HOH . H 4 HOH B 16 416 33 HOH HOH . H 4 HOH B 17 417 35 HOH HOH . H 4 HOH B 18 418 36 HOH HOH . H 4 HOH B 19 419 39 HOH HOH . H 4 HOH B 20 420 42 HOH HOH . H 4 HOH B 21 421 43 HOH HOH . H 4 HOH B 22 422 44 HOH HOH . H 4 HOH B 23 423 45 HOH HOH . H 4 HOH B 24 424 50 HOH HOH . H 4 HOH B 25 425 52 HOH HOH . H 4 HOH B 26 426 54 HOH HOH . H 4 HOH B 27 427 55 HOH HOH . H 4 HOH B 28 428 56 HOH HOH . H 4 HOH B 29 429 58 HOH HOH . H 4 HOH B 30 430 59 HOH HOH . H 4 HOH B 31 431 63 HOH HOH . H 4 HOH B 32 432 64 HOH HOH . H 4 HOH B 33 433 65 HOH HOH . H 4 HOH B 34 434 67 HOH HOH . H 4 HOH B 35 435 69 HOH HOH . H 4 HOH B 36 436 70 HOH HOH . H 4 HOH B 37 437 72 HOH HOH . H 4 HOH B 38 438 73 HOH HOH . H 4 HOH B 39 439 74 HOH HOH . H 4 HOH B 40 440 77 HOH HOH . H 4 HOH B 41 441 80 HOH HOH . H 4 HOH B 42 442 82 HOH HOH . H 4 HOH B 43 443 84 HOH HOH . H 4 HOH B 44 444 85 HOH HOH . H 4 HOH B 45 445 87 HOH HOH . H 4 HOH B 46 446 90 HOH HOH . H 4 HOH B 47 447 93 HOH HOH . H 4 HOH B 48 448 94 HOH HOH . H 4 HOH B 49 449 95 HOH HOH . H 4 HOH B 50 450 96 HOH HOH . H 4 HOH B 51 451 98 HOH HOH . H 4 HOH B 52 452 101 HOH HOH . H 4 HOH B 53 453 105 HOH HOH . H 4 HOH B 54 454 106 HOH HOH . H 4 HOH B 55 455 107 HOH HOH . H 4 HOH B 56 456 108 HOH HOH . H 4 HOH B 57 457 109 HOH HOH . H 4 HOH B 58 458 110 HOH HOH . H 4 HOH B 59 459 111 HOH HOH . H 4 HOH B 60 460 112 HOH HOH . H 4 HOH B 61 461 113 HOH HOH . H 4 HOH B 62 462 114 HOH HOH . H 4 HOH B 63 463 115 HOH HOH . H 4 HOH B 64 464 118 HOH HOH . H 4 HOH B 65 465 119 HOH HOH . H 4 HOH B 66 466 120 HOH HOH . H 4 HOH B 67 467 123 HOH HOH . H 4 HOH B 68 468 124 HOH HOH . H 4 HOH B 69 469 125 HOH HOH . H 4 HOH B 70 470 128 HOH HOH . H 4 HOH B 71 471 137 HOH HOH . H 4 HOH B 72 472 138 HOH HOH . H 4 HOH B 73 473 141 HOH HOH . H 4 HOH B 74 474 143 HOH HOH . H 4 HOH B 75 475 144 HOH HOH . H 4 HOH B 76 476 149 HOH HOH . H 4 HOH B 77 477 150 HOH HOH . H 4 HOH B 78 478 156 HOH HOH . H 4 HOH B 79 479 158 HOH HOH . H 4 HOH B 80 480 160 HOH HOH . H 4 HOH B 81 481 162 HOH HOH . H 4 HOH B 82 482 163 HOH HOH . H 4 HOH B 83 483 165 HOH HOH . H 4 HOH B 84 484 166 HOH HOH . H 4 HOH B 85 485 168 HOH HOH . H 4 HOH B 86 486 169 HOH HOH . H 4 HOH B 87 487 170 HOH HOH . H 4 HOH B 88 488 175 HOH HOH . H 4 HOH B 89 489 177 HOH HOH . H 4 HOH B 90 490 178 HOH HOH . H 4 HOH B 91 491 179 HOH HOH . H 4 HOH B 92 492 180 HOH HOH . H 4 HOH B 93 493 182 HOH HOH . H 4 HOH B 94 494 184 HOH HOH . H 4 HOH B 95 495 187 HOH HOH . H 4 HOH B 96 496 188 HOH HOH . H 4 HOH B 97 497 189 HOH HOH . H 4 HOH B 98 498 190 HOH HOH . H 4 HOH B 99 499 191 HOH HOH . H 4 HOH B 100 500 192 HOH HOH . H 4 HOH B 101 501 193 HOH HOH . H 4 HOH B 102 502 194 HOH HOH . H 4 HOH B 103 503 195 HOH HOH . H 4 HOH B 104 504 196 HOH HOH . H 4 HOH B 105 505 201 HOH HOH . H 4 HOH B 106 506 202 HOH HOH . H 4 HOH B 107 507 205 HOH HOH . H 4 HOH B 108 508 206 HOH HOH . H 4 HOH B 109 509 209 HOH HOH . H 4 HOH B 110 510 210 HOH HOH . H 4 HOH B 111 511 211 HOH HOH . H 4 HOH B 112 512 212 HOH HOH . H 4 HOH B 113 513 214 HOH HOH . H 4 HOH B 114 514 215 HOH HOH . H 4 HOH B 115 515 216 HOH HOH . H 4 HOH B 116 516 218 HOH HOH . H 4 HOH B 117 517 219 HOH HOH . H 4 HOH B 118 518 220 HOH HOH . H 4 HOH B 119 519 221 HOH HOH . H 4 HOH B 120 520 222 HOH HOH . H 4 HOH B 121 521 225 HOH HOH . H 4 HOH B 122 522 227 HOH HOH . H 4 HOH B 123 523 228 HOH HOH . H 4 HOH B 124 524 229 HOH HOH . H 4 HOH B 125 525 230 HOH HOH . H 4 HOH B 126 526 231 HOH HOH . H 4 HOH B 127 527 235 HOH HOH . H 4 HOH B 128 528 239 HOH HOH . H 4 HOH B 129 529 243 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 -5.322 -0.904 0.942 1 36.35 ? C1 EDO 302 B 1 HETATM 2 O O1 EDO . . . F 3 -5.29 -2.315 1.194 1 36.78 ? O1 EDO 302 B 1 HETATM 3 C C2 EDO . . . F 3 -4.851 -0.568 -0.472 1 39.31 ? C2 EDO 302 B 1 HETATM 4 O O2 EDO . . . F 3 -5.929 -0.642 -1.432 1 37.62 ? O2 EDO 302 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 1125 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #