data_4F3R # _model_server_result.job_id Nm6yqm3RLkwICKfjd_wz-g _model_server_result.datetime_utc '2024-11-29 20:20:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4F3R # _exptl.entry_id 4F3R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4F3R _cell.length_a 103.965 _cell.length_b 103.965 _cell.length_c 89.862 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 PISA trimeric 3 author_and_software_defined_assembly 3 PISA hexameric 6 software_defined_assembly 4 PISA hexameric 6 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1,2,3 B,D,F 2 1,4,5 C,G 3 1,6,7 A,E 4 1,2,3 C,G 4 8,9,10 B,D,F 5 1,4,5,11,12,13 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 103.965 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 51.9825 90.036331 0 4 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 6 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 51.9825 90.036331 0 7 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -51.9825 90.036331 0 8 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 9 'crystal symmetry operation' 5_665 x-y+1,-y+1,-z 1 0 0 0 -1 0 0 0 -1 51.9825 90.036331 0 10 'crystal symmetry operation' 6_655 -x+1,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 103.965 0 0 11 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 89.862 12 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 89.862 13 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 89.862 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 106 A HIS 103 1_555 A N MSE 107 A MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 107 A MSE 104 1_555 A N ASN 108 A ASN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C THR 132 A THR 129 1_555 A N MSE 133 A MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 133 A MSE 130 1_555 A N VAL 134 A VAL 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C MSE 4 B MSE 1 1_555 B N LYS 5 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 B C HIS 106 B HIS 103 1_555 B N MSE 107 B MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 B C MSE 107 B MSE 104 1_555 B N ASN 108 B ASN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 B C THR 132 B THR 129 1_555 B N MSE 133 B MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 B C MSE 133 B MSE 130 1_555 B N VAL 134 B VAL 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 C C MSE 4 C MSE 1 1_555 C N LYS 5 C LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 C C HIS 106 C HIS 103 1_555 C N MSE 107 C MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 C C MSE 107 C MSE 104 1_555 C N ASN 108 C ASN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 C C THR 132 C THR 129 1_555 C N MSE 133 C MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 C C MSE 133 C MSE 130 1_555 C N VAL 134 C VAL 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 B O ALA 59 B ALA 56 1_555 D CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc2 B O LEU 62 B LEU 59 1_555 D CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc3 D CA CA . B CA 201 1_555 F O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc4 D CA CA . B CA 201 1_555 F O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc5 D CA CA . B CA 201 1_555 F O HOH . B HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc6 D CA CA . B CA 201 1_555 F O HOH . B HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4F3R _atom_sites.fract_transf_matrix[1][1] 0.009619 _atom_sites.fract_transf_matrix[1][2] 0.005553 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011128 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CA B 1 201 1 CA CA . E 3 HOH A 1 201 3 HOH HOH . E 3 HOH A 2 202 15 HOH HOH . E 3 HOH A 3 203 16 HOH HOH . E 3 HOH A 4 204 18 HOH HOH . E 3 HOH A 5 205 21 HOH HOH . E 3 HOH A 6 206 22 HOH HOH . E 3 HOH A 7 207 35 HOH HOH . E 3 HOH A 8 208 36 HOH HOH . E 3 HOH A 9 209 46 HOH HOH . E 3 HOH A 10 210 47 HOH HOH . E 3 HOH A 11 211 50 HOH HOH . E 3 HOH A 12 212 59 HOH HOH . E 3 HOH A 13 213 63 HOH HOH . E 3 HOH A 14 214 69 HOH HOH . E 3 HOH A 15 215 72 HOH HOH . E 3 HOH A 16 216 74 HOH HOH . E 3 HOH A 17 217 76 HOH HOH . E 3 HOH A 18 218 78 HOH HOH . E 3 HOH A 19 219 81 HOH HOH . E 3 HOH A 20 220 84 HOH HOH . E 3 HOH A 21 221 88 HOH HOH . E 3 HOH A 22 222 89 HOH HOH . E 3 HOH A 23 223 93 HOH HOH . E 3 HOH A 24 224 97 HOH HOH . E 3 HOH A 25 225 100 HOH HOH . E 3 HOH A 26 226 101 HOH HOH . E 3 HOH A 27 227 105 HOH HOH . E 3 HOH A 28 228 106 HOH HOH . E 3 HOH A 29 229 112 HOH HOH . E 3 HOH A 30 230 113 HOH HOH . E 3 HOH A 31 231 120 HOH HOH . E 3 HOH A 32 232 126 HOH HOH . E 3 HOH A 33 233 128 HOH HOH . E 3 HOH A 34 234 129 HOH HOH . E 3 HOH A 35 235 133 HOH HOH . E 3 HOH A 36 236 138 HOH HOH . E 3 HOH A 37 237 144 HOH HOH . E 3 HOH A 38 238 156 HOH HOH . E 3 HOH A 39 239 158 HOH HOH . E 3 HOH A 40 240 159 HOH HOH . E 3 HOH A 41 241 162 HOH HOH . E 3 HOH A 42 242 167 HOH HOH . E 3 HOH A 43 243 178 HOH HOH . E 3 HOH A 44 244 184 HOH HOH . E 3 HOH A 45 245 185 HOH HOH . E 3 HOH A 46 246 186 HOH HOH . E 3 HOH A 47 247 188 HOH HOH . F 3 HOH B 1 301 2 HOH HOH . F 3 HOH B 2 302 5 HOH HOH . F 3 HOH B 3 303 6 HOH HOH . F 3 HOH B 4 304 8 HOH HOH . F 3 HOH B 5 305 10 HOH HOH . F 3 HOH B 6 306 11 HOH HOH . F 3 HOH B 7 307 13 HOH HOH . F 3 HOH B 8 308 14 HOH HOH . F 3 HOH B 9 309 17 HOH HOH . F 3 HOH B 10 310 20 HOH HOH . F 3 HOH B 11 311 23 HOH HOH . F 3 HOH B 12 312 25 HOH HOH . F 3 HOH B 13 313 26 HOH HOH . F 3 HOH B 14 314 27 HOH HOH . F 3 HOH B 15 315 28 HOH HOH . F 3 HOH B 16 316 30 HOH HOH . F 3 HOH B 17 317 32 HOH HOH . F 3 HOH B 18 318 33 HOH HOH . F 3 HOH B 19 319 34 HOH HOH . F 3 HOH B 20 320 37 HOH HOH . F 3 HOH B 21 321 41 HOH HOH . F 3 HOH B 22 322 42 HOH HOH . F 3 HOH B 23 323 43 HOH HOH . F 3 HOH B 24 324 44 HOH HOH . F 3 HOH B 25 325 45 HOH HOH . F 3 HOH B 26 326 51 HOH HOH . F 3 HOH B 27 327 52 HOH HOH . F 3 HOH B 28 328 55 HOH HOH . F 3 HOH B 29 329 56 HOH HOH . F 3 HOH B 30 330 57 HOH HOH . F 3 HOH B 31 331 58 HOH HOH . F 3 HOH B 32 332 61 HOH HOH . F 3 HOH B 33 333 62 HOH HOH . F 3 HOH B 34 334 66 HOH HOH . F 3 HOH B 35 335 70 HOH HOH . F 3 HOH B 36 336 71 HOH HOH . F 3 HOH B 37 337 73 HOH HOH . F 3 HOH B 38 338 77 HOH HOH . F 3 HOH B 39 339 82 HOH HOH . F 3 HOH B 40 340 83 HOH HOH . F 3 HOH B 41 341 86 HOH HOH . F 3 HOH B 42 342 87 HOH HOH . F 3 HOH B 43 343 91 HOH HOH . F 3 HOH B 44 344 96 HOH HOH . F 3 HOH B 45 345 98 HOH HOH . F 3 HOH B 46 346 102 HOH HOH . F 3 HOH B 47 347 104 HOH HOH . F 3 HOH B 48 348 108 HOH HOH . F 3 HOH B 49 349 109 HOH HOH . F 3 HOH B 50 350 110 HOH HOH . F 3 HOH B 51 351 115 HOH HOH . F 3 HOH B 52 352 116 HOH HOH . F 3 HOH B 53 353 117 HOH HOH . F 3 HOH B 54 354 118 HOH HOH . F 3 HOH B 55 355 121 HOH HOH . F 3 HOH B 56 356 122 HOH HOH . F 3 HOH B 57 357 123 HOH HOH . F 3 HOH B 58 358 124 HOH HOH . F 3 HOH B 59 359 125 HOH HOH . F 3 HOH B 60 360 130 HOH HOH . F 3 HOH B 61 361 132 HOH HOH . F 3 HOH B 62 362 136 HOH HOH . F 3 HOH B 63 363 137 HOH HOH . F 3 HOH B 64 364 140 HOH HOH . F 3 HOH B 65 365 141 HOH HOH . F 3 HOH B 66 366 145 HOH HOH . F 3 HOH B 67 367 146 HOH HOH . F 3 HOH B 68 368 148 HOH HOH . F 3 HOH B 69 369 149 HOH HOH . F 3 HOH B 70 370 151 HOH HOH . F 3 HOH B 71 371 153 HOH HOH . F 3 HOH B 72 372 155 HOH HOH . F 3 HOH B 73 373 157 HOH HOH . F 3 HOH B 74 374 160 HOH HOH . F 3 HOH B 75 375 161 HOH HOH . F 3 HOH B 76 376 163 HOH HOH . F 3 HOH B 77 377 164 HOH HOH . F 3 HOH B 78 378 165 HOH HOH . F 3 HOH B 79 379 166 HOH HOH . F 3 HOH B 80 380 168 HOH HOH . F 3 HOH B 81 381 169 HOH HOH . F 3 HOH B 82 382 171 HOH HOH . F 3 HOH B 83 383 172 HOH HOH . F 3 HOH B 84 384 174 HOH HOH . F 3 HOH B 85 385 175 HOH HOH . F 3 HOH B 86 386 176 HOH HOH . F 3 HOH B 87 387 179 HOH HOH . F 3 HOH B 88 388 183 HOH HOH . G 3 HOH C 1 201 1 HOH HOH . G 3 HOH C 2 202 4 HOH HOH . G 3 HOH C 3 203 7 HOH HOH . G 3 HOH C 4 204 9 HOH HOH . G 3 HOH C 5 205 12 HOH HOH . G 3 HOH C 6 206 19 HOH HOH . G 3 HOH C 7 207 24 HOH HOH . G 3 HOH C 8 208 29 HOH HOH . G 3 HOH C 9 209 31 HOH HOH . G 3 HOH C 10 210 38 HOH HOH . G 3 HOH C 11 211 39 HOH HOH . G 3 HOH C 12 212 40 HOH HOH . G 3 HOH C 13 213 48 HOH HOH . G 3 HOH C 14 214 49 HOH HOH . G 3 HOH C 15 215 53 HOH HOH . G 3 HOH C 16 216 54 HOH HOH . G 3 HOH C 17 217 60 HOH HOH . G 3 HOH C 18 218 64 HOH HOH . G 3 HOH C 19 219 65 HOH HOH . G 3 HOH C 20 220 67 HOH HOH . G 3 HOH C 21 221 68 HOH HOH . G 3 HOH C 22 222 75 HOH HOH . G 3 HOH C 23 223 79 HOH HOH . G 3 HOH C 24 224 80 HOH HOH . G 3 HOH C 25 225 85 HOH HOH . G 3 HOH C 26 226 90 HOH HOH . G 3 HOH C 27 227 92 HOH HOH . G 3 HOH C 28 228 94 HOH HOH . G 3 HOH C 29 229 95 HOH HOH . G 3 HOH C 30 230 99 HOH HOH . G 3 HOH C 31 231 103 HOH HOH . G 3 HOH C 32 232 107 HOH HOH . G 3 HOH C 33 233 111 HOH HOH . G 3 HOH C 34 234 114 HOH HOH . G 3 HOH C 35 235 119 HOH HOH . G 3 HOH C 36 236 127 HOH HOH . G 3 HOH C 37 237 131 HOH HOH . G 3 HOH C 38 238 142 HOH HOH . G 3 HOH C 39 239 143 HOH HOH . G 3 HOH C 40 240 147 HOH HOH . G 3 HOH C 41 241 150 HOH HOH . G 3 HOH C 42 242 152 HOH HOH . G 3 HOH C 43 243 154 HOH HOH . G 3 HOH C 44 244 170 HOH HOH . G 3 HOH C 45 245 173 HOH HOH . G 3 HOH C 46 246 177 HOH HOH . G 3 HOH C 47 247 180 HOH HOH . G 3 HOH C 48 248 181 HOH HOH . G 3 HOH C 49 249 182 HOH HOH . G 3 HOH C 50 250 187 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.405 _atom_site.Cartn_y 31.885 _atom_site.Cartn_z 26.098 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #