data_4F4C # _model_server_result.job_id Z8yFSfoos1oDTMxLq3N2cQ _model_server_result.datetime_utc '2024-12-22 01:17:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f4c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1405}' # _entry.id 4F4C # _exptl.entry_id 4F4C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 512.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'undecyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F4C _cell.length_a 96.896 _cell.length_b 155.36 _cell.length_c 162.416 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F4C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG N 801 NDG 2 n B NAG 2 B 2 NAG N 802 NDG 2 n B BMA 3 B 3 BMA N 803 BMA 2 n B MAN 4 B 4 MAN N 804 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 125 A ASN 125 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.484 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale3 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale4 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? # _chem_comp.formula 'C23 H44 O10 S' _chem_comp.formula_weight 512.654 _chem_comp.id 0SA _chem_comp.mon_nstd_flag . _chem_comp.name 'undecyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL CK 0SA sing 1 n n CK CJ 0SA sing 2 n n CJ CI 0SA sing 3 n n CI CH 0SA sing 4 n n CH CG 0SA sing 5 n n CG CF 0SA sing 6 n n CF CD 0SA sing 7 n n CD CC 0SA sing 8 n n CC CB 0SA sing 9 n n CA CB 0SA sing 10 n n CA S1' 0SA sing 11 n n S1' C1' 0SA sing 12 n n O2' C2' 0SA sing 13 n n C1' C2' 0SA sing 14 n n C1' O5' 0SA sing 15 n n C2' C3' 0SA sing 16 n n O5' C5' 0SA sing 17 n n O6' C6' 0SA sing 18 n n C5' C6' 0SA sing 19 n n C5' C4' 0SA sing 20 n n C3' O3' 0SA sing 21 n n C3' C4' 0SA sing 22 n n C4' O1 0SA sing 23 n n O1 C1 0SA sing 24 n n O6 C6 0SA sing 25 n n C1 O5 0SA sing 26 n n C1 C2 0SA sing 27 n n O5 C5 0SA sing 28 n n C6 C5 0SA sing 29 n n C5 C4 0SA sing 30 n n O2 C2 0SA sing 31 n n C2 C3 0SA sing 32 n n C4 C3 0SA sing 33 n n C4 O4 0SA sing 34 n n C3 O3 0SA sing 35 n n CL H1 0SA sing 36 n n CL H2 0SA sing 37 n n CL H3 0SA sing 38 n n CK H4 0SA sing 39 n n CK H5 0SA sing 40 n n CJ H6 0SA sing 41 n n CJ H7 0SA sing 42 n n CI H8 0SA sing 43 n n CI H9 0SA sing 44 n n CH H10 0SA sing 45 n n CH H11 0SA sing 46 n n CG H12 0SA sing 47 n n CG H13 0SA sing 48 n n CF H14 0SA sing 49 n n CF H15 0SA sing 50 n n CD H16 0SA sing 51 n n CD H17 0SA sing 52 n n CC H18 0SA sing 53 n n CC H19 0SA sing 54 n n CB H20 0SA sing 55 n n CB H21 0SA sing 56 n n CA H22 0SA sing 57 n n CA H23 0SA sing 58 n n C1' H24 0SA sing 59 n n C2' H25 0SA sing 60 n n O2' H26 0SA sing 61 n n C3' H27 0SA sing 62 n n O3' H28 0SA sing 63 n n C5' H29 0SA sing 64 n n C6' H30 0SA sing 65 n n C6' H31 0SA sing 66 n n O6' H32 0SA sing 67 n n C4' H33 0SA sing 68 n n C1 H34 0SA sing 69 n n C5 H35 0SA sing 70 n n C6 H36 0SA sing 71 n n C6 H37 0SA sing 72 n n O6 H38 0SA sing 73 n n C4 H39 0SA sing 74 n n O4 H40 0SA sing 75 n n C3 H41 0SA sing 76 n n O3 H42 0SA sing 77 n n C2 H43 0SA sing 78 n n O2 H44 0SA sing 79 n n # _atom_sites.entry_id 4F4C _atom_sites.fract_transf_matrix[1][1] 0.01032 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 0SA A 1 1405 5004 0SA 0SA . D 3 0SA A 1 1406 5005 0SA 0SA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CL 0SA . . . C 3 -26.865 -17.547 -11.182 1 153.85 ? CL 0SA 1405 A 1 HETATM 2 C CK 0SA . . . C 3 -26.002 -16.412 -10.629 1 154.25 ? CK 0SA 1405 A 1 HETATM 3 C CJ 0SA . . . C 3 -26.807 -15.109 -10.604 1 155.25 ? CJ 0SA 1405 A 1 HETATM 4 C CI 0SA . . . C 3 -25.9 -13.957 -10.163 1 153.29 ? CI 0SA 1405 A 1 HETATM 5 C CH 0SA . . . C 3 -26.711 -12.664 -10.078 1 150.09 ? CH 0SA 1405 A 1 HETATM 6 C CG 0SA . . . C 3 -25.886 -11.59 -9.366 1 147.77 ? CG 0SA 1405 A 1 HETATM 7 C CF 0SA . . . C 3 -26.784 -10.377 -9.099 1 149.89 ? CF 0SA 1405 A 1 HETATM 8 C CD 0SA . . . C 3 -26.054 -9.362 -8.224 1 152.94 ? CD 0SA 1405 A 1 HETATM 9 C CC 0SA . . . C 3 -26.938 -8.129 -8.032 1 158.44 ? CC 0SA 1405 A 1 HETATM 10 C CB 0SA . . . C 3 -26.078 -6.997 -7.46 1 163.2 ? CB 0SA 1405 A 1 HETATM 11 C CA 0SA . . . C 3 -26.847 -5.667 -7.472 1 166.33 ? CA 0SA 1405 A 1 HETATM 12 S S1' 0SA . . . C 3 -25.766 -4.252 -7.108 1 171.46 ? S1' 0SA 1405 A 1 HETATM 13 C C1' 0SA . . . C 3 -25.749 -4.214 -5.328 1 170.89 ? C1' 0SA 1405 A 1 HETATM 14 C C2' 0SA . . . C 3 -24.6 -3.333 -4.866 1 172.18 ? C2' 0SA 1405 A 1 HETATM 15 O O2' 0SA . . . C 3 -23.374 -3.87 -5.385 1 171.94 ? O2' 0SA 1405 A 1 HETATM 16 C C3' 0SA . . . C 3 -24.551 -3.308 -3.347 1 173.13 ? C3' 0SA 1405 A 1 HETATM 17 O O3' 0SA . . . C 3 -23.582 -2.327 -2.943 1 172.6 ? O3' 0SA 1405 A 1 HETATM 18 O O5' 0SA . . . C 3 -26.964 -3.624 -4.849 1 170.57 ? O5' 0SA 1405 A 1 HETATM 19 C C5' 0SA . . . C 3 -27.021 -3.738 -3.421 1 172.72 ? C5' 0SA 1405 A 1 HETATM 20 C C6' 0SA . . . C 3 -28.382 -3.179 -3.004 1 172.35 ? C6' 0SA 1405 A 1 HETATM 21 O O6' 0SA . . . C 3 -29.396 -3.862 -3.746 1 170.82 ? O6' 0SA 1405 A 1 HETATM 22 C C4' 0SA . . . C 3 -25.906 -2.947 -2.747 1 173.73 ? C4' 0SA 1405 A 1 HETATM 23 O O1 0SA . . . C 3 -25.922 -3.226 -1.334 1 175.58 ? O1 0SA 1405 A 1 HETATM 24 C C1 0SA . . . C 3 -25.33 -2.199 -0.52 1 176.86 ? C1 0SA 1405 A 1 HETATM 25 O O5 0SA . . . C 3 -26.171 -1.035 -0.474 1 178.65 ? O5 0SA 1405 A 1 HETATM 26 C C5 0SA . . . C 3 -27.463 -1.326 0.083 1 178.36 ? C5 0SA 1405 A 1 HETATM 27 C C6 0SA . . . C 3 -28.354 -0.081 0.041 1 175.14 ? C6 0SA 1405 A 1 HETATM 28 O O6 0SA . . . C 3 -28.844 0.118 -1.287 1 168.67 ? O6 0SA 1405 A 1 HETATM 29 C C4 0SA . . . C 3 -27.353 -1.82 1.518 1 179.78 ? C4 0SA 1405 A 1 HETATM 30 O O4 0SA . . . C 3 -28.657 -2.22 1.967 1 179.91 ? O4 0SA 1405 A 1 HETATM 31 C C3 0SA . . . C 3 -26.434 -3.03 1.567 1 178.55 ? C3 0SA 1405 A 1 HETATM 32 O O3 0SA . . . C 3 -26.191 -3.38 2.939 1 178.28 ? O3 0SA 1405 A 1 HETATM 33 C C2 0SA . . . C 3 -25.108 -2.701 0.901 1 177.31 ? C2 0SA 1405 A 1 HETATM 34 O O2 0SA . . . C 3 -24.274 -3.868 0.898 1 176.61 ? O2 0SA 1405 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 34 #