data_4F4O # _model_server_result.job_id yye2S7VKp4oajrI50nojYg _model_server_result.datetime_utc '2024-11-30 07:33:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":202}' # _entry.id 4F4O # _exptl.entry_id 4F4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F4O _cell.length_a 72.88 _cell.length_b 197.78 _cell.length_c 322.07 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 1 1 G,H,I,J,K,L,Q,R,S,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 U N N ? 7 W N N ? 7 AA N N ? 7 CA N N ? 7 GA N N ? 7 IA N N ? 7 MA N N ? 7 OA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 2 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n M NAG 1 M 1 NAG C 1001 NAG 4 n M NAG 2 M 2 NAG C 1002 NAG 5 n N NAG 1 N 1 NAG C 1005 NAG 5 n N FUC 2 N 2 FUC C 1006 FUC 4 n O NAG 1 O 1 NAG F 1001 NAG 4 n O NAG 2 O 2 NAG F 1002 NAG 5 n P NAG 1 P 1 NAG F 1005 NAG 5 n P FUC 2 P 2 FUC F 1006 FUC 4 n Q NAG 1 Q 1 NAG I 1001 NAG 4 n Q NAG 2 Q 2 NAG I 1002 NAG 5 n R NAG 1 R 1 NAG I 1005 NAG 5 n R FUC 2 R 2 FUC I 1006 FUC 5 n S NAG 1 S 1 NAG L 1005 NAG 5 n S FUC 2 S 2 FUC L 1006 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 33 C CYS 33 1_555 F SG CYS 33 F CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 C SG CYS 52 C CYS 52 1_555 C SG CYS 86 C CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 90 C CYS 90 1_555 C SG CYS 207 C CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf4 C SG CYS 250 C CYS 250 1_555 C SG CYS 281 C CYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 C SG CYS 292 C CYS 292 1_555 C SG CYS 322 C CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf6 F SG CYS 52 F CYS 52 1_555 F SG CYS 86 F CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf7 F SG CYS 90 F CYS 90 1_555 F SG CYS 207 F CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf8 F SG CYS 250 F CYS 250 1_555 F SG CYS 281 F CYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf9 F SG CYS 292 F CYS 292 1_555 F SG CYS 322 F CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf10 I SG CYS 33 I CYS 33 1_555 L SG CYS 33 L CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf11 I SG CYS 52 I CYS 52 1_555 I SG CYS 86 I CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 I SG CYS 90 I CYS 90 1_555 I SG CYS 207 I CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf13 I SG CYS 250 I CYS 250 1_555 I SG CYS 281 I CYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 I SG CYS 292 I CYS 292 1_555 I SG CYS 322 I CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf15 L SG CYS 52 L CYS 52 1_555 L SG CYS 86 L CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf16 L SG CYS 90 L CYS 90 1_555 L SG CYS 207 L CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf17 L SG CYS 250 L CYS 250 1_555 L SG CYS 281 L CYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf18 L SG CYS 292 L CYS 292 1_555 L SG CYS 322 L CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 C ND2 ASN 125 C ASN 125 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale2 C ND2 ASN 151 C ASN 151 1_555 X C1 NAG . C NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 C ND2 ASN 183 C ASN 183 1_555 Y C1 NAG . C NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale4 C ND2 ASN 232 C ASN 232 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 F ND2 ASN 125 F ASN 125 1_555 O C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale6 F ND2 ASN 151 F ASN 151 1_555 DA C1 NAG . F NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale7 F ND2 ASN 183 F ASN 183 1_555 EA C1 NAG . F NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale8 F ND2 ASN 232 F ASN 232 1_555 P C1 NAG . P NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale9 I ND2 ASN 125 I ASN 125 1_555 Q C1 NAG . Q NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale10 I ND2 ASN 151 I ASN 151 1_555 JA C1 NAG . I NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale11 I ND2 ASN 183 I ASN 183 1_555 KA C1 NAG . I NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale12 I ND2 ASN 232 I ASN 232 1_555 R C1 NAG . R NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale13 L ND2 ASN 125 L ASN 125 1_555 PA C1 NAG . L NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale14 L ND2 ASN 183 L ASN 183 1_555 QA C1 NAG . L NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale15 L ND2 ASN 232 L ASN 232 1_555 S C1 NAG . S NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale16 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? covale ? covale17 N O6 NAG . N NAG 1 1_555 N C1 FUC . N FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale18 O O4 NAG . O NAG 1 1_555 O C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? covale ? covale19 P O6 NAG . P NAG 1 1_555 P C1 FUC . P FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale20 Q O4 NAG . Q NAG 1 1_555 Q C1 NAG . Q NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? covale ? covale21 R O6 NAG . R NAG 1 1_555 R C1 FUC . R FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale22 S O6 NAG . S NAG 1 1_555 S C1 FUC . S FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 T FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc2 T FE HEM . A HEM 201 1_555 U O1 OXY . A OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? metalc ? metalc3 T FE HEM . A HEM 201 1_555 U O2 OXY . A OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 V FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc5 V FE HEM . B HEM 201 1_555 W O1 OXY . B OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.757 ? metalc ? metalc6 V FE HEM . B HEM 201 1_555 W O2 OXY . B OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc7 D NE2 HIS 87 D HIS 87 1_555 Z FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc8 Z FE HEM . D HEM 201 1_555 AA O1 OXY . D OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? metalc ? metalc9 Z FE HEM . D HEM 201 1_555 AA O2 OXY . D OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc10 E NE2 HIS 92 E HIS 92 1_555 BA FE HEM . E HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc11 BA FE HEM . E HEM 201 1_555 CA O1 OXY . E OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.757 ? metalc ? metalc12 BA FE HEM . E HEM 201 1_555 CA O2 OXY . E OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc13 G NE2 HIS 87 G HIS 87 1_555 FA FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc14 FA FE HEM . G HEM 201 1_555 GA O1 OXY . G OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? metalc ? metalc15 FA FE HEM . G HEM 201 1_555 GA O2 OXY . G OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc16 H NE2 HIS 92 H HIS 92 1_555 HA FE HEM . H HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc17 HA FE HEM . H HEM 201 1_555 IA O1 OXY . H OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc18 HA FE HEM . H HEM 201 1_555 IA O2 OXY . H OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc19 J NE2 HIS 87 J HIS 87 1_555 LA FE HEM . J HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc20 LA FE HEM . J HEM 201 1_555 MA O1 OXY . J OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc21 LA FE HEM . J HEM 201 1_555 MA O2 OXY . J OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc22 K NE2 HIS 92 K HIS 92 1_555 NA FE HEM . K HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc23 NA FE HEM . K HEM 201 1_555 OA O1 OXY . K OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? metalc ? metalc24 NA FE HEM . K HEM 201 1_555 OA O2 OXY . K OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 370 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 4F4O _atom_sites.fract_transf_matrix[1][1] 0.013721 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code T 6 HEM A 1 201 650 HEM HEM . U 7 OXY A 1 202 651 OXY OXY . V 6 HEM B 1 201 750 HEM HEM . W 7 OXY B 1 202 751 OXY OXY . X 8 NAG C 1 1003 1003 NAG NAG . Y 8 NAG C 1 1004 1004 NAG NAG . Z 6 HEM D 1 201 650 HEM HEM . AA 7 OXY D 1 202 651 OXY OXY . BA 6 HEM E 1 201 750 HEM HEM . CA 7 OXY E 1 202 751 OXY OXY . DA 8 NAG F 1 1003 1003 NAG NAG . EA 8 NAG F 1 1004 1004 NAG NAG . FA 6 HEM G 1 201 650 HEM HEM . GA 7 OXY G 1 202 651 OXY OXY . HA 6 HEM H 1 201 750 HEM HEM . IA 7 OXY H 1 202 751 OXY OXY . JA 8 NAG I 1 1003 1003 NAG NAG . KA 8 NAG I 1 1004 1004 NAG NAG . LA 6 HEM J 1 201 650 HEM HEM . MA 7 OXY J 1 202 651 OXY OXY . NA 6 HEM K 1 201 750 HEM HEM . OA 7 OXY K 1 202 751 OXY OXY . PA 8 NAG L 1 1001 1001 NAG NAG . QA 8 NAG L 1 1002 1004 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . U 7 -30.961 -14.644 77.231 1 96.37 ? O1 OXY 202 A 1 HETATM 2 O O2 OXY . . . U 7 -29.835 -14.667 76.806 1 92.18 ? O2 OXY 202 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 2 #