data_4F5B # _model_server_result.job_id 8p0IPJ7OnhgcPbf81T6qHQ _model_server_result.datetime_utc '2025-02-26 21:22:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4F5B # _exptl.entry_id 4F5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'phosphorylated tyrosine' _entity.formula_weight 261.168 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description O-PHOSPHOTYROSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4F5B _cell.length_a 67.6 _cell.length_b 67.6 _cell.length_c 46.8 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H12 N O6 P' _chem_comp.formula_weight 261.168 _chem_comp.id PTR _chem_comp.mon_nstd_flag n _chem_comp.name O-PHOSPHOTYROSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms PHOSPHONOTYROSINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PTR sing 277 n n N H PTR sing 278 n n N H2 PTR sing 279 n n CA C PTR sing 280 n n CA CB PTR sing 281 n n CA HA PTR sing 282 n n C O PTR doub 283 n n C OXT PTR sing 284 n n OXT HXT PTR sing 285 n n CB CG PTR sing 286 n n CB HB2 PTR sing 287 n n CB HB3 PTR sing 288 n n CG CD1 PTR doub 289 n y CG CD2 PTR sing 290 n y CD1 CE1 PTR sing 291 n y CD1 HD1 PTR sing 292 n n CD2 CE2 PTR doub 293 n y CD2 HD2 PTR sing 294 n n CE1 CZ PTR doub 295 n y CE1 HE1 PTR sing 296 n n CE2 CZ PTR sing 297 n y CE2 HE2 PTR sing 298 n n CZ OH PTR sing 299 n n OH P PTR sing 300 n n P O1P PTR doub 301 n n P O2P PTR sing 302 n n P O3P PTR sing 303 n n O2P HO2P PTR sing 304 n n O3P HO3P PTR sing 305 n n # _atom_sites.entry_id 4F5B _atom_sites.fract_transf_matrix[1][1] 0.014793 _atom_sites.fract_transf_matrix[1][2] 0.008541 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017081 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PTR A 1 301 1 PTR PTR . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 8 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 11 HOH HOH . C 3 HOH A 12 412 12 HOH HOH . C 3 HOH A 13 413 13 HOH HOH . C 3 HOH A 14 414 14 HOH HOH . C 3 HOH A 15 415 15 HOH HOH . C 3 HOH A 16 416 16 HOH HOH . C 3 HOH A 17 417 17 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 19 HOH HOH . C 3 HOH A 20 420 20 HOH HOH . C 3 HOH A 21 421 21 HOH HOH . C 3 HOH A 22 422 22 HOH HOH . C 3 HOH A 23 423 23 HOH HOH . C 3 HOH A 24 424 24 HOH HOH . C 3 HOH A 25 425 25 HOH HOH . C 3 HOH A 26 426 26 HOH HOH . C 3 HOH A 27 427 27 HOH HOH . C 3 HOH A 28 428 28 HOH HOH . C 3 HOH A 29 429 29 HOH HOH . C 3 HOH A 30 430 30 HOH HOH . C 3 HOH A 31 431 31 HOH HOH . C 3 HOH A 32 432 32 HOH HOH . C 3 HOH A 33 433 33 HOH HOH . C 3 HOH A 34 434 34 HOH HOH . C 3 HOH A 35 435 35 HOH HOH . C 3 HOH A 36 436 36 HOH HOH . C 3 HOH A 37 437 37 HOH HOH . C 3 HOH A 38 438 38 HOH HOH . C 3 HOH A 39 439 39 HOH HOH . C 3 HOH A 40 440 40 HOH HOH . C 3 HOH A 41 441 41 HOH HOH . C 3 HOH A 42 442 42 HOH HOH . C 3 HOH A 43 443 43 HOH HOH . C 3 HOH A 44 444 44 HOH HOH . C 3 HOH A 45 445 45 HOH HOH . C 3 HOH A 46 446 46 HOH HOH . C 3 HOH A 47 447 47 HOH HOH . C 3 HOH A 48 448 48 HOH HOH . C 3 HOH A 49 449 49 HOH HOH . C 3 HOH A 50 450 50 HOH HOH . C 3 HOH A 51 451 51 HOH HOH . C 3 HOH A 52 452 52 HOH HOH . C 3 HOH A 53 453 53 HOH HOH . C 3 HOH A 54 454 54 HOH HOH . C 3 HOH A 55 455 55 HOH HOH . C 3 HOH A 56 456 56 HOH HOH . C 3 HOH A 57 457 57 HOH HOH . C 3 HOH A 58 458 58 HOH HOH . C 3 HOH A 59 459 59 HOH HOH . C 3 HOH A 60 460 60 HOH HOH . C 3 HOH A 61 461 61 HOH HOH . C 3 HOH A 62 462 62 HOH HOH . C 3 HOH A 63 463 63 HOH HOH . C 3 HOH A 64 464 64 HOH HOH . C 3 HOH A 65 465 65 HOH HOH . C 3 HOH A 66 466 66 HOH HOH . C 3 HOH A 67 467 67 HOH HOH . C 3 HOH A 68 468 68 HOH HOH . C 3 HOH A 69 469 69 HOH HOH . C 3 HOH A 70 470 70 HOH HOH . C 3 HOH A 71 471 71 HOH HOH . C 3 HOH A 72 472 72 HOH HOH . C 3 HOH A 73 473 73 HOH HOH . C 3 HOH A 74 474 74 HOH HOH . C 3 HOH A 75 475 75 HOH HOH . C 3 HOH A 76 476 76 HOH HOH . C 3 HOH A 77 477 77 HOH HOH . C 3 HOH A 78 478 78 HOH HOH . C 3 HOH A 79 479 79 HOH HOH . C 3 HOH A 80 480 80 HOH HOH . C 3 HOH A 81 481 81 HOH HOH . C 3 HOH A 82 482 82 HOH HOH . C 3 HOH A 83 483 83 HOH HOH . C 3 HOH A 84 484 84 HOH HOH . C 3 HOH A 85 485 85 HOH HOH . C 3 HOH A 86 486 86 HOH HOH . C 3 HOH A 87 487 87 HOH HOH . C 3 HOH A 88 488 88 HOH HOH . C 3 HOH A 89 489 89 HOH HOH . C 3 HOH A 90 490 90 HOH HOH . C 3 HOH A 91 491 91 HOH HOH . C 3 HOH A 92 492 92 HOH HOH . C 3 HOH A 93 493 93 HOH HOH . C 3 HOH A 94 494 94 HOH HOH . C 3 HOH A 95 495 95 HOH HOH . C 3 HOH A 96 496 96 HOH HOH . C 3 HOH A 97 497 97 HOH HOH . C 3 HOH A 98 498 98 HOH HOH . C 3 HOH A 99 499 99 HOH HOH . C 3 HOH A 100 500 100 HOH HOH . C 3 HOH A 101 501 101 HOH HOH . C 3 HOH A 102 502 102 HOH HOH . C 3 HOH A 103 503 103 HOH HOH . C 3 HOH A 104 504 104 HOH HOH . C 3 HOH A 105 505 105 HOH HOH . C 3 HOH A 106 506 106 HOH HOH . C 3 HOH A 107 507 107 HOH HOH . C 3 HOH A 108 508 108 HOH HOH . C 3 HOH A 109 509 109 HOH HOH . C 3 HOH A 110 510 110 HOH HOH . C 3 HOH A 111 511 111 HOH HOH . C 3 HOH A 112 512 112 HOH HOH . C 3 HOH A 113 513 113 HOH HOH . C 3 HOH A 114 514 114 HOH HOH . C 3 HOH A 115 515 115 HOH HOH . C 3 HOH A 116 516 116 HOH HOH . C 3 HOH A 117 517 117 HOH HOH . C 3 HOH A 118 518 118 HOH HOH . C 3 HOH A 119 519 119 HOH HOH . C 3 HOH A 120 520 120 HOH HOH . C 3 HOH A 121 521 121 HOH HOH . C 3 HOH A 122 522 122 HOH HOH . C 3 HOH A 123 523 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PTR . . . B 2 -0.893 21.161 -8.347 1 21.11 ? N PTR 301 A 1 HETATM 2 C CA PTR . . . B 2 -0.799 22.518 -7.705 1 20.6 ? CA PTR 301 A 1 HETATM 3 C C PTR . . . B 2 -0.332 23.519 -8.757 1 22.08 ? C PTR 301 A 1 HETATM 4 O O PTR . . . B 2 -0.179 23.247 -9.968 1 23.34 ? O PTR 301 A 1 HETATM 5 O OXT PTR . . . B 2 -0.139 24.653 -8.368 1 23.44 ? OXT PTR 301 A 1 HETATM 6 C CB PTR . . . B 2 0.092 22.484 -6.417 1 20.63 ? CB PTR 301 A 1 HETATM 7 C CG PTR . . . B 2 -0.307 21.326 -5.534 1 19.07 ? CG PTR 301 A 1 HETATM 8 C CD1 PTR . . . B 2 -1.536 21.315 -4.892 1 16.53 ? CD1 PTR 301 A 1 HETATM 9 C CD2 PTR . . . B 2 0.492 20.193 -5.434 1 19.26 ? CD2 PTR 301 A 1 HETATM 10 C CE1 PTR . . . B 2 -1.948 20.204 -4.153 1 16.24 ? CE1 PTR 301 A 1 HETATM 11 C CE2 PTR . . . B 2 0.094 19.087 -4.678 1 18.91 ? CE2 PTR 301 A 1 HETATM 12 C CZ PTR . . . B 2 -1.133 19.093 -4.039 1 15.41 ? CZ PTR 301 A 1 HETATM 13 O OH PTR . . . B 2 -1.554 18.077 -3.378 1 15.9 ? OH PTR 301 A 1 HETATM 14 P P PTR . . . B 2 -2.3 16.867 -4.171 1 15.51 ? P PTR 301 A 1 HETATM 15 O O1P PTR . . . B 2 -1.154 16.157 -4.868 1 18.69 ? O1P PTR 301 A 1 HETATM 16 O O2P PTR . . . B 2 -3.326 17.44 -5.156 1 16.59 ? O2P PTR 301 A 1 HETATM 17 O O3P PTR . . . B 2 -2.97 15.933 -3.168 1 15.95 ? O3P PTR 301 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #