data_4F6R
#
_model_server_result.job_id            7Z7q4NyIBCZerImIEXGZCg 
_model_server_result.datetime_utc      '2024-12-02 12:07:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4f6r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    4F6R 
#
_exptl.entry_id    4F6R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.29 
_cell.angle_gamma         90 
_cell.entry_id            4F6R 
_cell.length_a            95.06 
_cell.length_b            75.57 
_cell.length_c            155.68 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4F6R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E O1B GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc2 E O1G GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc3 F MG MG . A MG 502 1_555 J O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc4 F MG MG . A MG 502 1_555 J O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc5 F MG MG . A MG 502 1_555 J O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc6 F MG MG . A MG 502 1_555 J O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 174 n n 
PG O2G GTP sing 175 n n 
PG O3G GTP sing 176 n n 
PG O3B GTP sing 177 n n 
O2G HOG2 GTP sing 178 n n 
O3G HOG3 GTP sing 179 n n 
O3B PB GTP sing 180 n n 
PB O1B GTP doub 181 n n 
PB O2B GTP sing 182 n n 
PB O3A GTP sing 183 n n 
O2B HOB2 GTP sing 184 n n 
O3A PA GTP sing 185 n n 
PA O1A GTP doub 186 n n 
PA O2A GTP sing 187 n n 
PA O5' GTP sing 188 n n 
O2A HOA2 GTP sing 189 n n 
O5' C5' GTP sing 190 n n 
C5' C4' GTP sing 191 n n 
C5' H5' GTP sing 192 n n 
C5' "H5''" GTP sing 193 n n 
C4' O4' GTP sing 194 n n 
C4' C3' GTP sing 195 n n 
C4' H4' GTP sing 196 n n 
O4' C1' GTP sing 197 n n 
C3' O3' GTP sing 198 n n 
C3' C2' GTP sing 199 n n 
C3' H3' GTP sing 200 n n 
O3' HO3' GTP sing 201 n n 
C2' O2' GTP sing 202 n n 
C2' C1' GTP sing 203 n n 
C2' H2' GTP sing 204 n n 
O2' HO2' GTP sing 205 n n 
C1' N9 GTP sing 206 n n 
C1' H1' GTP sing 207 n n 
N9 C8 GTP sing 208 n y 
N9 C4 GTP sing 209 n y 
C8 N7 GTP doub 210 n y 
C8 H8 GTP sing 211 n n 
N7 C5 GTP sing 212 n y 
C5 C6 GTP sing 213 n n 
C5 C4 GTP doub 214 n y 
C6 O6 GTP doub 215 n n 
C6 N1 GTP sing 216 n n 
N1 C2 GTP sing 217 n n 
N1 HN1 GTP sing 218 n n 
C2 N2 GTP sing 219 n n 
C2 N3 GTP doub 220 n n 
N2 HN21 GTP sing 221 n n 
N2 HN22 GTP sing 222 n n 
N3 C4 GTP sing 223 n n 
#
_atom_sites.entry_id                     4F6R 
_atom_sites.fract_transf_matrix[1][1]    0.01052 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00116 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013233 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006462 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 GTP A 1 501 600 GTP GTP . 
F 6 MG A 1 502 601 MG MG . 
G 7 SO4 A 1 503 1 SO4 SO4 . 
H 8 GDP B 1 501 600 GDP GDP . 
I 9 MES B 1 502 1 MES MES . 
J 10 HOH A 1 601 2 HOH HOH . 
J 10 HOH A 2 602 3 HOH HOH . 
J 10 HOH A 3 603 4 HOH HOH . 
J 10 HOH A 4 604 8 HOH HOH . 
J 10 HOH A 5 605 9 HOH HOH . 
J 10 HOH A 6 606 11 HOH HOH . 
J 10 HOH A 7 607 12 HOH HOH . 
J 10 HOH A 8 608 15 HOH HOH . 
J 10 HOH A 9 609 16 HOH HOH . 
J 10 HOH A 10 610 20 HOH HOH . 
J 10 HOH A 11 611 22 HOH HOH . 
J 10 HOH A 12 612 23 HOH HOH . 
J 10 HOH A 13 613 24 HOH HOH . 
J 10 HOH A 14 614 25 HOH HOH . 
J 10 HOH A 15 615 30 HOH HOH . 
J 10 HOH A 16 616 32 HOH HOH . 
J 10 HOH A 17 617 33 HOH HOH . 
J 10 HOH A 18 618 34 HOH HOH . 
J 10 HOH A 19 619 41 HOH HOH . 
J 10 HOH A 20 620 43 HOH HOH . 
J 10 HOH A 21 621 48 HOH HOH . 
J 10 HOH A 22 622 49 HOH HOH . 
J 10 HOH A 23 623 55 HOH HOH . 
J 10 HOH A 24 624 56 HOH HOH . 
J 10 HOH A 25 625 57 HOH HOH . 
J 10 HOH A 26 626 63 HOH HOH . 
J 10 HOH A 27 627 67 HOH HOH . 
J 10 HOH A 28 628 68 HOH HOH . 
J 10 HOH A 29 629 72 HOH HOH . 
J 10 HOH A 30 630 73 HOH HOH . 
J 10 HOH A 31 631 76 HOH HOH . 
J 10 HOH A 32 632 81 HOH HOH . 
J 10 HOH A 33 633 82 HOH HOH . 
J 10 HOH A 34 634 83 HOH HOH . 
J 10 HOH A 35 635 85 HOH HOH . 
J 10 HOH A 36 636 88 HOH HOH . 
J 10 HOH A 37 637 90 HOH HOH . 
J 10 HOH A 38 638 97 HOH HOH . 
J 10 HOH A 39 639 99 HOH HOH . 
K 10 HOH B 1 601 5 HOH HOH . 
K 10 HOH B 2 602 10 HOH HOH . 
K 10 HOH B 3 603 13 HOH HOH . 
K 10 HOH B 4 604 17 HOH HOH . 
K 10 HOH B 5 605 18 HOH HOH . 
K 10 HOH B 6 606 19 HOH HOH . 
K 10 HOH B 7 607 26 HOH HOH . 
K 10 HOH B 8 608 29 HOH HOH . 
K 10 HOH B 9 609 35 HOH HOH . 
K 10 HOH B 10 610 36 HOH HOH . 
K 10 HOH B 11 611 40 HOH HOH . 
K 10 HOH B 12 612 42 HOH HOH . 
K 10 HOH B 13 613 44 HOH HOH . 
K 10 HOH B 14 614 45 HOH HOH . 
K 10 HOH B 15 615 46 HOH HOH . 
K 10 HOH B 16 616 50 HOH HOH . 
K 10 HOH B 17 617 51 HOH HOH . 
K 10 HOH B 18 618 52 HOH HOH . 
K 10 HOH B 19 619 58 HOH HOH . 
K 10 HOH B 20 620 59 HOH HOH . 
K 10 HOH B 21 621 60 HOH HOH . 
K 10 HOH B 22 622 61 HOH HOH . 
K 10 HOH B 23 623 62 HOH HOH . 
K 10 HOH B 24 624 64 HOH HOH . 
K 10 HOH B 25 625 66 HOH HOH . 
K 10 HOH B 26 626 69 HOH HOH . 
K 10 HOH B 27 627 74 HOH HOH . 
K 10 HOH B 28 628 75 HOH HOH . 
K 10 HOH B 29 629 77 HOH HOH . 
K 10 HOH B 30 630 78 HOH HOH . 
K 10 HOH B 31 631 79 HOH HOH . 
K 10 HOH B 32 632 80 HOH HOH . 
K 10 HOH B 33 633 86 HOH HOH . 
K 10 HOH B 34 634 87 HOH HOH . 
K 10 HOH B 35 635 91 HOH HOH . 
K 10 HOH B 36 636 92 HOH HOH . 
K 10 HOH B 37 637 93 HOH HOH . 
K 10 HOH B 38 638 94 HOH HOH . 
K 10 HOH B 39 639 95 HOH HOH . 
K 10 HOH B 40 640 98 HOH HOH . 
K 10 HOH B 41 641 100 HOH HOH . 
K 10 HOH B 42 642 101 HOH HOH . 
K 10 HOH B 43 643 102 HOH HOH . 
L 10 HOH C 1 101 14 HOH HOH . 
L 10 HOH C 2 102 28 HOH HOH . 
L 10 HOH C 3 103 47 HOH HOH . 
M 10 HOH D 1 201 1 HOH HOH . 
M 10 HOH D 2 202 6 HOH HOH . 
M 10 HOH D 3 203 7 HOH HOH . 
M 10 HOH D 4 204 21 HOH HOH . 
M 10 HOH D 5 205 27 HOH HOH . 
M 10 HOH D 6 206 31 HOH HOH . 
M 10 HOH D 7 207 37 HOH HOH . 
M 10 HOH D 8 208 38 HOH HOH . 
M 10 HOH D 9 209 39 HOH HOH . 
M 10 HOH D 10 210 53 HOH HOH . 
M 10 HOH D 11 211 54 HOH HOH . 
M 10 HOH D 12 212 65 HOH HOH . 
M 10 HOH D 13 213 70 HOH HOH . 
M 10 HOH D 14 214 71 HOH HOH . 
M 10 HOH D 15 215 84 HOH HOH . 
M 10 HOH D 16 216 89 HOH HOH . 
M 10 HOH D 17 217 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . E 5 31.606 -5.852 48.42 1 44.63 ? PG GTP 501 A 1 
HETATM 2 O O1G GTP . . . E 5 31.255 -6.684 47.228 1 46.84 ? O1G GTP 501 A 1 
HETATM 3 O O2G GTP . . . E 5 30.359 -5.338 49.077 1 42.07 ? O2G GTP 501 A 1 
HETATM 4 O O3G GTP . . . E 5 32.523 -4.729 48.032 1 44.55 ? O3G GTP 501 A 1 
HETATM 5 O O3B GTP . . . E 5 32.354 -6.802 49.48 1 47.33 ? O3B GTP 501 A 1 
HETATM 6 P PB GTP . . . E 5 32.588 -8.291 49.537 1 44.94 ? PB GTP 501 A 1 
HETATM 7 O O1B GTP . . . E 5 31.362 -9.044 49.118 1 42.61 ? O1B GTP 501 A 1 
HETATM 8 O O2B GTP . . . E 5 32.957 -8.706 50.931 1 46.78 ? O2B GTP 501 A 1 
HETATM 9 O O3A GTP . . . E 5 33.786 -8.603 48.52 1 47.72 ? O3A GTP 501 A 1 
HETATM 10 P PA GTP . . . E 5 34.681 -9.783 48.292 1 47.42 ? PA GTP 501 A 1 
HETATM 11 O O1A GTP . . . E 5 34.355 -10.42 46.971 1 43.08 ? O1A GTP 501 A 1 
HETATM 12 O O2A GTP . . . E 5 34.484 -10.79 49.394 1 47.16 ? O2A GTP 501 A 1 
HETATM 13 O O5' GTP . . . E 5 36.171 -9.193 48.298 1 46.21 ? O5' GTP 501 A 1 
HETATM 14 C C5' GTP . . . E 5 37.023 -9.297 47.163 1 48.73 ? C5' GTP 501 A 1 
HETATM 15 C C4' GTP . . . E 5 38.27 -9.979 47.649 1 49.75 ? C4' GTP 501 A 1 
HETATM 16 O O4' GTP . . . E 5 37.944 -11.295 48.158 1 48.44 ? O4' GTP 501 A 1 
HETATM 17 C C3' GTP . . . E 5 39.276 -10.224 46.535 1 51.77 ? C3' GTP 501 A 1 
HETATM 18 O O3' GTP . . . E 5 40.567 -10.347 47.12 1 52 ? O3' GTP 501 A 1 
HETATM 19 C C2' GTP . . . E 5 38.791 -11.553 45.971 1 51.41 ? C2' GTP 501 A 1 
HETATM 20 O O2' GTP . . . E 5 39.825 -12.261 45.31 1 57.79 ? O2' GTP 501 A 1 
HETATM 21 C C1' GTP . . . E 5 38.421 -12.281 47.254 1 47.84 ? C1' GTP 501 A 1 
HETATM 22 N N9 GTP . . . E 5 37.391 -13.3 47.061 1 46.75 ? N9 GTP 501 A 1 
HETATM 23 C C8 GTP . . . E 5 36.101 -13.131 46.63 1 47.08 ? C8 GTP 501 A 1 
HETATM 24 N N7 GTP . . . E 5 35.422 -14.249 46.577 1 47.48 ? N7 GTP 501 A 1 
HETATM 25 C C5 GTP . . . E 5 36.319 -15.218 47 1 46.13 ? C5 GTP 501 A 1 
HETATM 26 C C6 GTP . . . E 5 36.18 -16.661 47.191 1 44.29 ? C6 GTP 501 A 1 
HETATM 27 O O6 GTP . . . E 5 35.18 -17.341 46.986 1 43.79 ? O6 GTP 501 A 1 
HETATM 28 N N1 GTP . . . E 5 37.347 -17.258 47.637 1 42.51 ? N1 GTP 501 A 1 
HETATM 29 C C2 GTP . . . E 5 38.527 -16.599 47.868 1 41.31 ? C2 GTP 501 A 1 
HETATM 30 N N2 GTP . . . E 5 39.57 -17.341 48.247 1 39.61 ? N2 GTP 501 A 1 
HETATM 31 N N3 GTP . . . E 5 38.676 -15.279 47.709 1 44.2 ? N3 GTP 501 A 1 
HETATM 32 C C4 GTP . . . E 5 37.539 -14.652 47.288 1 46.03 ? C4 GTP 501 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           37 
_model_server_stats.create_model_time_ms    87 
_model_server_stats.query_time_ms           490 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#