data_4F6V # _model_server_result.job_id 4mQpYu6VEI94Df2JLWVFvQ _model_server_result.datetime_utc '2024-11-02 13:41:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4F6V # _exptl.entry_id 4F6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 341.358 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,4-dioxo-4-{[3-(3-phenoxyphenyl)propyl]amino}butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4F6V _cell.length_a 80.712 _cell.length_b 80.712 _cell.length_c 90.864 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 173 A ASN 168 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A OD2 ASP 177 A ASP 172 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 B OAA ZYM . A ZYM 301 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc4 B OAC ZYM . A ZYM 301 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc5 B OAD ZYM . A ZYM 301 1_555 F MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc6 C O2 SRT . A SRT 302 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc7 D OAE FJP . A FJP 303 1_555 E MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc8 F MG MG . A MG 305 1_555 G O HOH . A HOH 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc9 F MG MG . A MG 305 1_555 G O HOH . A HOH 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? # _chem_comp.formula 'C19 H19 N O5' _chem_comp.formula_weight 341.358 _chem_comp.id ZYM _chem_comp.mon_nstd_flag . _chem_comp.name '2,4-dioxo-4-{[3-(3-phenoxyphenyl)propyl]amino}butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAT OAA ZYM sing 437 n n OAA HOAA ZYM sing 438 n n OAB CAU ZYM doub 439 n n OAC CAT ZYM doub 440 n n OAD CAV ZYM doub 441 n n CAU CAE ZYM sing 442 n n CAV CAE ZYM sing 443 n n CAE HAE ZYM sing 444 n n CAE HAEA ZYM sing 445 n n CAH CAF ZYM doub 446 n y CAG CAF ZYM sing 447 n y CAF HAF ZYM sing 448 n n CAK CAG ZYM doub 449 n y CAG HAG ZYM sing 450 n n CAL CAH ZYM sing 451 n y CAH HAH ZYM sing 452 n n CAJ CAI ZYM doub 453 n y CAI CAM ZYM sing 454 n y CAI HAI ZYM sing 455 n n CAW CAJ ZYM sing 456 n y CAJ HAJ ZYM sing 457 n n CAX CAK ZYM sing 458 n y CAK HAK ZYM sing 459 n n CAX CAL ZYM doub 460 n y CAL HAL ZYM sing 461 n n CAY CAM ZYM doub 462 n y CAM HAM ZYM sing 463 n n CAW CAN ZYM doub 464 n y CAN CAY ZYM sing 465 n y CAN HAN ZYM sing 466 n n CAP CAO ZYM sing 467 n n CAO CAQ ZYM sing 468 n n CAO HAO ZYM sing 469 n n CAO HAOA ZYM sing 470 n n CAP NAR ZYM sing 471 n n CAP HAP ZYM sing 472 n n CAP HAPA ZYM sing 473 n n CAQ CAW ZYM sing 474 n n CAQ HAQ ZYM sing 475 n n CAQ HAQA ZYM sing 476 n n CAU NAR ZYM sing 477 n n NAR HNAR ZYM sing 478 n n CAY OAS ZYM sing 479 n n OAS CAX ZYM sing 480 n n CAV CAT ZYM sing 481 n n # _atom_sites.entry_id 4F6V _atom_sites.fract_transf_matrix[1][1] 0.01239 _atom_sites.fract_transf_matrix[1][2] 0.007153 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZYM A 1 301 288 ZYM ZYM . C 3 SRT A 1 302 289 SRT TAR . D 4 FJP A 1 303 290 FJP FJP . E 5 MG A 1 304 291 MG MG . F 5 MG A 1 305 292 MG MG . G 6 HOH A 1 401 293 HOH HOH . G 6 HOH A 2 402 294 HOH HOH . G 6 HOH A 3 403 295 HOH HOH . G 6 HOH A 4 404 296 HOH HOH . G 6 HOH A 5 405 297 HOH HOH . G 6 HOH A 6 406 298 HOH HOH . G 6 HOH A 7 407 299 HOH HOH . G 6 HOH A 8 408 300 HOH HOH . G 6 HOH A 9 409 301 HOH HOH . G 6 HOH A 10 410 302 HOH HOH . G 6 HOH A 11 411 303 HOH HOH . G 6 HOH A 12 412 304 HOH HOH . G 6 HOH A 13 413 305 HOH HOH . G 6 HOH A 14 414 306 HOH HOH . G 6 HOH A 15 415 307 HOH HOH . G 6 HOH A 16 416 308 HOH HOH . G 6 HOH A 17 417 309 HOH HOH . G 6 HOH A 18 418 310 HOH HOH . G 6 HOH A 19 419 311 HOH HOH . G 6 HOH A 20 420 312 HOH HOH . G 6 HOH A 21 421 313 HOH HOH . G 6 HOH A 22 422 314 HOH HOH . G 6 HOH A 23 423 315 HOH HOH . G 6 HOH A 24 424 316 HOH HOH . G 6 HOH A 25 425 317 HOH HOH . G 6 HOH A 26 426 318 HOH HOH . G 6 HOH A 27 427 319 HOH HOH . G 6 HOH A 28 428 320 HOH HOH . G 6 HOH A 29 429 321 HOH HOH . G 6 HOH A 30 430 322 HOH HOH . G 6 HOH A 31 431 323 HOH HOH . G 6 HOH A 32 432 324 HOH HOH . G 6 HOH A 33 433 325 HOH HOH . G 6 HOH A 34 434 326 HOH HOH . G 6 HOH A 35 435 327 HOH HOH . G 6 HOH A 36 436 328 HOH HOH . G 6 HOH A 37 437 329 HOH HOH . G 6 HOH A 38 438 330 HOH HOH . G 6 HOH A 39 439 331 HOH HOH . G 6 HOH A 40 440 332 HOH HOH . G 6 HOH A 41 441 333 HOH HOH . G 6 HOH A 42 442 334 HOH HOH . G 6 HOH A 43 443 335 HOH HOH . G 6 HOH A 44 444 336 HOH HOH . G 6 HOH A 45 445 337 HOH HOH . G 6 HOH A 46 446 338 HOH HOH . G 6 HOH A 47 447 339 HOH HOH . G 6 HOH A 48 448 340 HOH HOH . G 6 HOH A 49 449 341 HOH HOH . G 6 HOH A 50 450 342 HOH HOH . G 6 HOH A 51 451 343 HOH HOH . G 6 HOH A 52 452 344 HOH HOH . G 6 HOH A 53 453 345 HOH HOH . G 6 HOH A 54 454 346 HOH HOH . G 6 HOH A 55 455 347 HOH HOH . G 6 HOH A 56 456 348 HOH HOH . G 6 HOH A 57 457 349 HOH HOH . G 6 HOH A 58 458 350 HOH HOH . G 6 HOH A 59 459 351 HOH HOH . G 6 HOH A 60 460 352 HOH HOH . G 6 HOH A 61 461 353 HOH HOH . G 6 HOH A 62 462 354 HOH HOH . G 6 HOH A 63 463 355 HOH HOH . G 6 HOH A 64 464 356 HOH HOH . G 6 HOH A 65 465 357 HOH HOH . G 6 HOH A 66 466 358 HOH HOH . G 6 HOH A 67 467 359 HOH HOH . G 6 HOH A 68 468 360 HOH HOH . G 6 HOH A 69 469 361 HOH HOH . G 6 HOH A 70 470 362 HOH HOH . G 6 HOH A 71 471 363 HOH HOH . G 6 HOH A 72 472 364 HOH HOH . G 6 HOH A 73 473 365 HOH HOH . G 6 HOH A 74 474 366 HOH HOH . G 6 HOH A 75 475 367 HOH HOH . G 6 HOH A 76 476 368 HOH HOH . G 6 HOH A 77 477 369 HOH HOH . G 6 HOH A 78 478 370 HOH HOH . G 6 HOH A 79 479 371 HOH HOH . G 6 HOH A 80 480 372 HOH HOH . G 6 HOH A 81 481 373 HOH HOH . G 6 HOH A 82 482 374 HOH HOH . G 6 HOH A 83 483 375 HOH HOH . G 6 HOH A 84 484 376 HOH HOH . G 6 HOH A 85 485 377 HOH HOH . G 6 HOH A 86 486 378 HOH HOH . G 6 HOH A 87 487 379 HOH HOH . G 6 HOH A 88 488 380 HOH HOH . G 6 HOH A 89 489 381 HOH HOH . G 6 HOH A 90 490 382 HOH HOH . G 6 HOH A 91 491 383 HOH HOH . G 6 HOH A 92 492 384 HOH HOH . G 6 HOH A 93 493 385 HOH HOH . G 6 HOH A 94 494 386 HOH HOH . G 6 HOH A 95 495 387 HOH HOH . G 6 HOH A 96 496 388 HOH HOH . G 6 HOH A 97 497 389 HOH HOH . G 6 HOH A 98 498 390 HOH HOH . G 6 HOH A 99 499 391 HOH HOH . G 6 HOH A 100 500 392 HOH HOH . G 6 HOH A 101 501 393 HOH HOH . G 6 HOH A 102 502 394 HOH HOH . G 6 HOH A 103 503 395 HOH HOH . G 6 HOH A 104 504 396 HOH HOH . G 6 HOH A 105 505 397 HOH HOH . G 6 HOH A 106 506 398 HOH HOH . G 6 HOH A 107 507 399 HOH HOH . G 6 HOH A 108 508 400 HOH HOH . G 6 HOH A 109 509 401 HOH HOH . G 6 HOH A 110 510 402 HOH HOH . G 6 HOH A 111 511 403 HOH HOH . G 6 HOH A 112 512 404 HOH HOH . G 6 HOH A 113 513 405 HOH HOH . G 6 HOH A 114 514 406 HOH HOH . G 6 HOH A 115 515 407 HOH HOH . G 6 HOH A 116 516 408 HOH HOH . G 6 HOH A 117 517 409 HOH HOH . G 6 HOH A 118 518 410 HOH HOH . G 6 HOH A 119 519 411 HOH HOH . G 6 HOH A 120 520 412 HOH HOH . G 6 HOH A 121 521 413 HOH HOH . G 6 HOH A 122 522 414 HOH HOH . G 6 HOH A 123 523 415 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA ZYM . . . B 2 23.122 -4.985 8.082 0.8 74.27 ? OAA ZYM 301 A 1 HETATM 2 O OAB ZYM . . . B 2 26.108 -7.177 4.826 0.8 69.3 ? OAB ZYM 301 A 1 HETATM 3 O OAC ZYM . . . B 2 23.383 -3.829 6.268 0.8 72.67 ? OAC ZYM 301 A 1 HETATM 4 O OAD ZYM . . . B 2 24.829 -5.289 5.1 0.8 75.78 ? OAD ZYM 301 A 1 HETATM 5 C CAE ZYM . . . B 2 25.024 -6.912 6.748 0.8 69.81 ? CAE ZYM 301 A 1 HETATM 6 C CAF ZYM . . . B 2 25.201 -15.927 12.254 1 34.53 ? CAF ZYM 301 A 1 HETATM 7 C CAG ZYM . . . B 2 26.564 -15.924 12.051 1 37.38 ? CAG ZYM 301 A 1 HETATM 8 C CAH ZYM . . . B 2 24.401 -15.182 11.442 1 35.55 ? CAH ZYM 301 A 1 HETATM 9 C CAI ZYM . . . B 2 28.454 -10.637 10.16 1 38.46 ? CAI ZYM 301 A 1 HETATM 10 C CAJ ZYM . . . B 2 28.956 -10.245 8.947 1 38.21 ? CAJ ZYM 301 A 1 HETATM 11 C CAK ZYM . . . B 2 27.123 -15.167 11.049 1 37.2 ? CAK ZYM 301 A 1 HETATM 12 C CAL ZYM . . . B 2 24.968 -14.45 10.427 1 39.06 ? CAL ZYM 301 A 1 HETATM 13 C CAM ZYM . . . B 2 27.723 -11.792 10.268 1 36.28 ? CAM ZYM 301 A 1 HETATM 14 C CAN ZYM . . . B 2 28.026 -12.164 7.919 1 36.92 ? CAN ZYM 301 A 1 HETATM 15 C CAO ZYM . . . B 2 28.602 -9.297 6.041 1 52.08 ? CAO ZYM 301 A 1 HETATM 16 C CAP ZYM . . . B 2 27.236 -9.582 5.441 1 56.54 ? CAP ZYM 301 A 1 HETATM 17 C CAQ ZYM . . . B 2 29.329 -10.542 6.532 1 43.74 ? CAQ ZYM 301 A 1 HETATM 18 N NAR ZYM . . . B 2 26.343 -8.773 6.258 1 66.26 ? NAR ZYM 301 A 1 HETATM 19 O OAS ZYM . . . B 2 26.805 -13.715 9.167 1 39.68 ? OAS ZYM 301 A 1 HETATM 20 C CAT ZYM . . . B 2 23.638 -4.807 6.963 0.8 73.04 ? CAT ZYM 301 A 1 HETATM 21 C CAU ZYM . . . B 2 25.832 -7.6 5.918 0.8 68.82 ? CAU ZYM 301 A 1 HETATM 22 C CAV ZYM . . . B 2 24.532 -5.734 6.305 0.8 73.04 ? CAV ZYM 301 A 1 HETATM 23 C CAW ZYM . . . B 2 28.755 -11.009 7.833 1 38.83 ? CAW ZYM 301 A 1 HETATM 24 C CAX ZYM . . . B 2 26.322 -14.422 10.223 1 37.91 ? CAX ZYM 301 A 1 HETATM 25 C CAY ZYM . . . B 2 27.515 -12.566 9.14 1 40.38 ? CAY ZYM 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #