data_4F78 # _model_server_result.job_id tAX9o5n7E7J3ksfbkwqmmA _model_server_result.datetime_utc '2024-11-10 01:22:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":316}' # _entry.id 4F78 # _exptl.entry_id 4F78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.19 _cell.angle_gamma 90 _cell.entry_id 4F78 _cell.length_a 38.912 _cell.length_b 43.96 _cell.length_c 80.199 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 O N N ? 6 P N N ? 6 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N MSE 3 A MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C MSE 3 A MSE 2 1_555 A N LYS 4 A LYS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C LEU 46 A LEU 45 1_555 A N MSE 47 A MSE 46 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C LEU 46 A LEU 45 1_555 A N MSE 47 A MSE 46 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C MSE 47 A MSE 46 1_555 A N LYS 48 A LYS 47 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C MSE 47 A MSE 46 1_555 A N LYS 48 A LYS 47 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C ILE 179 A ILE 178 1_555 A N MSE 180 A MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C MSE 180 A MSE 179 1_555 A N GLN 181 A GLN 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OD1 ASP 115 A ASP 114 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc2 A ND1 HIS 168 A HIS 167 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc3 B ZN ZN . A ZN 301 1_555 R O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc4 A NE2 HIS 108 A HIS 107 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc5 A OD2 ASP 115 A ASP 114 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc6 B ZN ZN . A ZN 301 1_555 D O2 SO4 . A SO4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 4F78 _atom_sites.fract_transf_matrix[1][1] 0.025699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004159 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 CL A 1 302 2 CL CL . D 4 SO4 A 1 303 3 SO4 SO4 . E 5 EDO A 1 304 9 EDO EDO . F 5 EDO A 1 305 10 EDO EDO . G 5 EDO A 1 306 11 EDO EDO . H 5 EDO A 1 307 12 EDO EDO . I 5 EDO A 1 308 13 EDO EDO . J 5 EDO A 1 309 14 EDO EDO . K 5 EDO A 1 310 15 EDO EDO . L 5 EDO A 1 311 16 EDO EDO . M 5 EDO A 1 312 17 EDO EDO . N 5 EDO A 1 313 18 EDO EDO . O 6 GOL A 1 314 19 GOL GOL . P 6 GOL A 1 315 20 GOL GOL . Q 6 GOL A 1 316 21 GOL GOL . R 7 HOH A 1 401 2 HOH HOH . R 7 HOH A 2 402 3 HOH HOH . R 7 HOH A 3 403 4 HOH HOH . R 7 HOH A 4 404 5 HOH HOH . R 7 HOH A 5 405 6 HOH HOH . R 7 HOH A 6 406 7 HOH HOH . R 7 HOH A 7 407 8 HOH HOH . R 7 HOH A 8 408 9 HOH HOH . R 7 HOH A 9 409 10 HOH HOH . R 7 HOH A 10 410 11 HOH HOH . R 7 HOH A 11 411 12 HOH HOH . R 7 HOH A 12 412 13 HOH HOH . R 7 HOH A 13 413 14 HOH HOH . R 7 HOH A 14 414 15 HOH HOH . R 7 HOH A 15 415 16 HOH HOH . R 7 HOH A 16 416 17 HOH HOH . R 7 HOH A 17 417 18 HOH HOH . R 7 HOH A 18 418 19 HOH HOH . R 7 HOH A 19 419 20 HOH HOH . R 7 HOH A 20 420 21 HOH HOH . R 7 HOH A 21 421 23 HOH HOH . R 7 HOH A 22 422 24 HOH HOH . R 7 HOH A 23 423 25 HOH HOH . R 7 HOH A 24 424 26 HOH HOH . R 7 HOH A 25 425 27 HOH HOH . R 7 HOH A 26 426 28 HOH HOH . R 7 HOH A 27 427 29 HOH HOH . R 7 HOH A 28 428 30 HOH HOH . R 7 HOH A 29 429 31 HOH HOH . R 7 HOH A 30 430 32 HOH HOH . R 7 HOH A 31 431 33 HOH HOH . R 7 HOH A 32 432 34 HOH HOH . R 7 HOH A 33 433 35 HOH HOH . R 7 HOH A 34 434 36 HOH HOH . R 7 HOH A 35 435 37 HOH HOH . R 7 HOH A 36 436 38 HOH HOH . R 7 HOH A 37 437 39 HOH HOH . R 7 HOH A 38 438 40 HOH HOH . R 7 HOH A 39 439 41 HOH HOH . R 7 HOH A 40 440 44 HOH HOH . R 7 HOH A 41 441 45 HOH HOH . R 7 HOH A 42 442 46 HOH HOH . R 7 HOH A 43 443 47 HOH HOH . R 7 HOH A 44 444 48 HOH HOH . R 7 HOH A 45 445 49 HOH HOH . R 7 HOH A 46 446 51 HOH HOH . R 7 HOH A 47 447 52 HOH HOH . R 7 HOH A 48 448 53 HOH HOH . R 7 HOH A 49 449 54 HOH HOH . R 7 HOH A 50 450 55 HOH HOH . R 7 HOH A 51 451 56 HOH HOH . R 7 HOH A 52 452 57 HOH HOH . R 7 HOH A 53 453 58 HOH HOH . R 7 HOH A 54 454 59 HOH HOH . R 7 HOH A 55 455 60 HOH HOH . R 7 HOH A 56 456 62 HOH HOH . R 7 HOH A 57 457 63 HOH HOH . R 7 HOH A 58 458 65 HOH HOH . R 7 HOH A 59 459 66 HOH HOH . R 7 HOH A 60 460 67 HOH HOH . R 7 HOH A 61 461 68 HOH HOH . R 7 HOH A 62 462 70 HOH HOH . R 7 HOH A 63 463 72 HOH HOH . R 7 HOH A 64 464 73 HOH HOH . R 7 HOH A 65 465 74 HOH HOH . R 7 HOH A 66 466 75 HOH HOH . R 7 HOH A 67 467 76 HOH HOH . R 7 HOH A 68 468 77 HOH HOH . R 7 HOH A 69 469 78 HOH HOH . R 7 HOH A 70 470 79 HOH HOH . R 7 HOH A 71 471 80 HOH HOH . R 7 HOH A 72 472 81 HOH HOH . R 7 HOH A 73 473 83 HOH HOH . R 7 HOH A 74 474 86 HOH HOH . R 7 HOH A 75 475 87 HOH HOH . R 7 HOH A 76 476 88 HOH HOH . R 7 HOH A 77 477 89 HOH HOH . R 7 HOH A 78 478 90 HOH HOH . R 7 HOH A 79 479 91 HOH HOH . R 7 HOH A 80 480 92 HOH HOH . R 7 HOH A 81 481 93 HOH HOH . R 7 HOH A 82 482 94 HOH HOH . R 7 HOH A 83 483 95 HOH HOH . R 7 HOH A 84 484 96 HOH HOH . R 7 HOH A 85 485 97 HOH HOH . R 7 HOH A 86 486 98 HOH HOH . R 7 HOH A 87 487 99 HOH HOH . R 7 HOH A 88 488 100 HOH HOH . R 7 HOH A 89 489 101 HOH HOH . R 7 HOH A 90 490 102 HOH HOH . R 7 HOH A 91 491 103 HOH HOH . R 7 HOH A 92 492 106 HOH HOH . R 7 HOH A 93 493 108 HOH HOH . R 7 HOH A 94 494 109 HOH HOH . R 7 HOH A 95 495 110 HOH HOH . R 7 HOH A 96 496 112 HOH HOH . R 7 HOH A 97 497 113 HOH HOH . R 7 HOH A 98 498 114 HOH HOH . R 7 HOH A 99 499 115 HOH HOH . R 7 HOH A 100 500 116 HOH HOH . R 7 HOH A 101 501 122 HOH HOH . R 7 HOH A 102 502 123 HOH HOH . R 7 HOH A 103 503 124 HOH HOH . R 7 HOH A 104 504 127 HOH HOH . R 7 HOH A 105 505 129 HOH HOH . R 7 HOH A 106 506 130 HOH HOH . R 7 HOH A 107 507 132 HOH HOH . R 7 HOH A 108 508 133 HOH HOH . R 7 HOH A 109 509 135 HOH HOH . R 7 HOH A 110 510 137 HOH HOH . R 7 HOH A 111 511 138 HOH HOH . R 7 HOH A 112 512 140 HOH HOH . R 7 HOH A 113 513 141 HOH HOH . R 7 HOH A 114 514 142 HOH HOH . R 7 HOH A 115 515 143 HOH HOH . R 7 HOH A 116 516 144 HOH HOH . R 7 HOH A 117 517 145 HOH HOH . R 7 HOH A 118 518 146 HOH HOH . R 7 HOH A 119 519 149 HOH HOH . R 7 HOH A 120 520 150 HOH HOH . R 7 HOH A 121 521 151 HOH HOH . R 7 HOH A 122 522 152 HOH HOH . R 7 HOH A 123 523 153 HOH HOH . R 7 HOH A 124 524 154 HOH HOH . R 7 HOH A 125 525 155 HOH HOH . R 7 HOH A 126 526 156 HOH HOH . R 7 HOH A 127 527 157 HOH HOH . R 7 HOH A 128 528 158 HOH HOH . R 7 HOH A 129 529 159 HOH HOH . R 7 HOH A 130 530 160 HOH HOH . R 7 HOH A 131 531 161 HOH HOH . R 7 HOH A 132 532 162 HOH HOH . R 7 HOH A 133 533 168 HOH HOH . R 7 HOH A 134 534 169 HOH HOH . R 7 HOH A 135 535 172 HOH HOH . R 7 HOH A 136 536 173 HOH HOH . R 7 HOH A 137 537 174 HOH HOH . R 7 HOH A 138 538 179 HOH HOH . R 7 HOH A 139 539 183 HOH HOH . R 7 HOH A 140 540 184 HOH HOH . R 7 HOH A 141 541 188 HOH HOH . R 7 HOH A 142 542 189 HOH HOH . R 7 HOH A 143 543 197 HOH HOH . R 7 HOH A 144 544 203 HOH HOH . R 7 HOH A 145 545 205 HOH HOH . R 7 HOH A 146 546 207 HOH HOH . R 7 HOH A 147 547 208 HOH HOH . R 7 HOH A 148 548 209 HOH HOH . R 7 HOH A 149 549 212 HOH HOH . R 7 HOH A 150 550 213 HOH HOH . R 7 HOH A 151 551 214 HOH HOH . R 7 HOH A 152 552 215 HOH HOH . R 7 HOH A 153 553 217 HOH HOH . R 7 HOH A 154 554 218 HOH HOH . R 7 HOH A 155 555 219 HOH HOH . R 7 HOH A 156 556 221 HOH HOH . R 7 HOH A 157 557 222 HOH HOH . R 7 HOH A 158 558 225 HOH HOH . R 7 HOH A 159 559 228 HOH HOH . R 7 HOH A 160 560 229 HOH HOH . R 7 HOH A 161 561 230 HOH HOH . R 7 HOH A 162 562 231 HOH HOH . R 7 HOH A 163 563 233 HOH HOH . R 7 HOH A 164 564 234 HOH HOH . R 7 HOH A 165 565 236 HOH HOH . R 7 HOH A 166 566 238 HOH HOH . R 7 HOH A 167 567 239 HOH HOH . R 7 HOH A 168 568 241 HOH HOH . R 7 HOH A 169 569 243 HOH HOH . R 7 HOH A 170 570 244 HOH HOH . R 7 HOH A 171 571 245 HOH HOH . R 7 HOH A 172 572 246 HOH HOH . R 7 HOH A 173 573 247 HOH HOH . R 7 HOH A 174 574 249 HOH HOH . R 7 HOH A 175 575 251 HOH HOH . R 7 HOH A 176 576 252 HOH HOH . R 7 HOH A 177 577 253 HOH HOH . R 7 HOH A 178 578 254 HOH HOH . R 7 HOH A 179 579 255 HOH HOH . R 7 HOH A 180 580 257 HOH HOH . R 7 HOH A 181 581 259 HOH HOH . R 7 HOH A 182 582 262 HOH HOH . R 7 HOH A 183 583 264 HOH HOH . R 7 HOH A 184 584 265 HOH HOH . R 7 HOH A 185 585 266 HOH HOH . R 7 HOH A 186 586 267 HOH HOH . R 7 HOH A 187 587 268 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Q 6 -12.39 -15.596 -18.65 1 59.82 ? C1 GOL 316 A 1 HETATM 2 O O1 GOL . . . Q 6 -11.578 -15.917 -19.764 1 56.9 ? O1 GOL 316 A 1 HETATM 3 C C2 GOL . . . Q 6 -12.969 -14.195 -18.829 1 58.49 ? C2 GOL 316 A 1 HETATM 4 O O2 GOL . . . Q 6 -11.976 -13.255 -18.543 1 51.74 ? O2 GOL 316 A 1 HETATM 5 C C3 GOL . . . Q 6 -13.334 -13.997 -20.291 1 58.05 ? C3 GOL 316 A 1 HETATM 6 O O3 GOL . . . Q 6 -14.293 -14.971 -20.617 1 56.94 ? O3 GOL 316 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #