data_4F7K
#
_model_server_result.job_id            QgQzPLK2TpC7yMEtIaITZQ 
_model_server_result.datetime_utc      '2024-11-24 06:00:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4f7k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    4F7K 
#
_exptl.entry_id    4F7K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.1 
_cell.angle_gamma         90 
_cell.entry_id            4F7K 
_cell.length_a            123.41 
_cell.length_b            91.36 
_cell.length_c            86.15 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4F7K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,H 1 1 
B,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4F7K 
_atom_sites.fract_transf_matrix[1][1]    0.008103 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00329 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010946 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012528 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 501 1 GOL GOL . 
D 2 GOL A 1 502 1 GOL GOL . 
E 2 GOL A 1 503 1 GOL GOL . 
F 2 GOL B 1 501 1 GOL GOL . 
G 2 GOL B 1 502 1 GOL GOL . 
H 3 HOH A 1 601 4 HOH HOH . 
H 3 HOH A 2 602 5 HOH HOH . 
H 3 HOH A 3 603 11 HOH HOH . 
H 3 HOH A 4 604 12 HOH HOH . 
H 3 HOH A 5 605 13 HOH HOH . 
H 3 HOH A 6 606 19 HOH HOH . 
H 3 HOH A 7 607 23 HOH HOH . 
H 3 HOH A 8 608 27 HOH HOH . 
H 3 HOH A 9 609 28 HOH HOH . 
H 3 HOH A 10 610 29 HOH HOH . 
H 3 HOH A 11 611 30 HOH HOH . 
H 3 HOH A 12 612 31 HOH HOH . 
H 3 HOH A 13 613 32 HOH HOH . 
H 3 HOH A 14 614 33 HOH HOH . 
H 3 HOH A 15 615 34 HOH HOH . 
H 3 HOH A 16 616 35 HOH HOH . 
H 3 HOH A 17 617 38 HOH HOH . 
H 3 HOH A 18 618 44 HOH HOH . 
H 3 HOH A 19 619 45 HOH HOH . 
H 3 HOH A 20 620 46 HOH HOH . 
H 3 HOH A 21 621 51 HOH HOH . 
H 3 HOH A 22 622 53 HOH HOH . 
H 3 HOH A 23 623 54 HOH HOH . 
H 3 HOH A 24 624 55 HOH HOH . 
H 3 HOH A 25 625 56 HOH HOH . 
H 3 HOH A 26 626 63 HOH HOH . 
H 3 HOH A 27 627 66 HOH HOH . 
H 3 HOH A 28 628 67 HOH HOH . 
H 3 HOH A 29 629 68 HOH HOH . 
H 3 HOH A 30 630 69 HOH HOH . 
H 3 HOH A 31 631 70 HOH HOH . 
H 3 HOH A 32 632 72 HOH HOH . 
H 3 HOH A 33 633 73 HOH HOH . 
H 3 HOH A 34 634 74 HOH HOH . 
H 3 HOH A 35 635 77 HOH HOH . 
H 3 HOH A 36 636 78 HOH HOH . 
H 3 HOH A 37 637 79 HOH HOH . 
H 3 HOH A 38 638 80 HOH HOH . 
H 3 HOH A 39 639 81 HOH HOH . 
H 3 HOH A 40 640 93 HOH HOH . 
H 3 HOH A 41 641 94 HOH HOH . 
H 3 HOH A 42 642 96 HOH HOH . 
H 3 HOH A 43 643 97 HOH HOH . 
H 3 HOH A 44 644 98 HOH HOH . 
H 3 HOH A 45 645 101 HOH HOH . 
H 3 HOH A 46 646 102 HOH HOH . 
H 3 HOH A 47 647 103 HOH HOH . 
H 3 HOH A 48 648 104 HOH HOH . 
H 3 HOH A 49 649 105 HOH HOH . 
H 3 HOH A 50 650 106 HOH HOH . 
H 3 HOH A 51 651 109 HOH HOH . 
H 3 HOH A 52 652 111 HOH HOH . 
H 3 HOH A 53 653 114 HOH HOH . 
H 3 HOH A 54 654 115 HOH HOH . 
H 3 HOH A 55 655 120 HOH HOH . 
H 3 HOH A 56 656 121 HOH HOH . 
H 3 HOH A 57 657 122 HOH HOH . 
H 3 HOH A 58 658 123 HOH HOH . 
H 3 HOH A 59 659 125 HOH HOH . 
H 3 HOH A 60 660 126 HOH HOH . 
H 3 HOH A 61 661 127 HOH HOH . 
H 3 HOH A 62 662 128 HOH HOH . 
H 3 HOH A 63 663 133 HOH HOH . 
H 3 HOH A 64 664 139 HOH HOH . 
H 3 HOH A 65 665 143 HOH HOH . 
H 3 HOH A 66 666 144 HOH HOH . 
H 3 HOH A 67 667 150 HOH HOH . 
H 3 HOH A 68 668 154 HOH HOH . 
H 3 HOH A 69 669 156 HOH HOH . 
H 3 HOH A 70 670 157 HOH HOH . 
H 3 HOH A 71 671 158 HOH HOH . 
H 3 HOH A 72 672 159 HOH HOH . 
H 3 HOH A 73 673 160 HOH HOH . 
H 3 HOH A 74 674 161 HOH HOH . 
H 3 HOH A 75 675 162 HOH HOH . 
H 3 HOH A 76 676 164 HOH HOH . 
H 3 HOH A 77 677 165 HOH HOH . 
H 3 HOH A 78 678 166 HOH HOH . 
H 3 HOH A 79 679 167 HOH HOH . 
H 3 HOH A 80 680 168 HOH HOH . 
H 3 HOH A 81 681 169 HOH HOH . 
H 3 HOH A 82 682 170 HOH HOH . 
H 3 HOH A 83 683 189 HOH HOH . 
H 3 HOH A 84 684 190 HOH HOH . 
H 3 HOH A 85 685 191 HOH HOH . 
H 3 HOH A 86 686 192 HOH HOH . 
H 3 HOH A 87 687 193 HOH HOH . 
H 3 HOH A 88 688 194 HOH HOH . 
H 3 HOH A 89 689 199 HOH HOH . 
H 3 HOH A 90 690 200 HOH HOH . 
H 3 HOH A 91 691 205 HOH HOH . 
H 3 HOH A 92 692 209 HOH HOH . 
H 3 HOH A 93 693 210 HOH HOH . 
H 3 HOH A 94 694 211 HOH HOH . 
H 3 HOH A 95 695 213 HOH HOH . 
H 3 HOH A 96 696 214 HOH HOH . 
H 3 HOH A 97 697 215 HOH HOH . 
H 3 HOH A 98 698 216 HOH HOH . 
H 3 HOH A 99 699 217 HOH HOH . 
H 3 HOH A 100 700 218 HOH HOH . 
H 3 HOH A 101 701 219 HOH HOH . 
H 3 HOH A 102 702 221 HOH HOH . 
H 3 HOH A 103 703 222 HOH HOH . 
H 3 HOH A 104 704 223 HOH HOH . 
H 3 HOH A 105 705 224 HOH HOH . 
H 3 HOH A 106 706 225 HOH HOH . 
H 3 HOH A 107 707 227 HOH HOH . 
H 3 HOH A 108 708 230 HOH HOH . 
H 3 HOH A 109 709 232 HOH HOH . 
H 3 HOH A 110 710 237 HOH HOH . 
H 3 HOH A 111 711 238 HOH HOH . 
H 3 HOH A 112 712 239 HOH HOH . 
H 3 HOH A 113 713 243 HOH HOH . 
H 3 HOH A 114 714 245 HOH HOH . 
H 3 HOH A 115 715 246 HOH HOH . 
H 3 HOH A 116 716 248 HOH HOH . 
H 3 HOH A 117 717 250 HOH HOH . 
H 3 HOH A 118 718 251 HOH HOH . 
H 3 HOH A 119 719 253 HOH HOH . 
H 3 HOH A 120 720 256 HOH HOH . 
H 3 HOH A 121 721 258 HOH HOH . 
H 3 HOH A 122 722 259 HOH HOH . 
H 3 HOH A 123 723 260 HOH HOH . 
H 3 HOH A 124 724 265 HOH HOH . 
H 3 HOH A 125 725 266 HOH HOH . 
H 3 HOH A 126 726 267 HOH HOH . 
H 3 HOH A 127 727 268 HOH HOH . 
H 3 HOH A 128 728 269 HOH HOH . 
H 3 HOH A 129 729 272 HOH HOH . 
H 3 HOH A 130 730 273 HOH HOH . 
H 3 HOH A 131 731 276 HOH HOH . 
H 3 HOH A 132 732 278 HOH HOH . 
H 3 HOH A 133 733 279 HOH HOH . 
H 3 HOH A 134 734 282 HOH HOH . 
H 3 HOH A 135 735 285 HOH HOH . 
H 3 HOH A 136 736 286 HOH HOH . 
H 3 HOH A 137 737 291 HOH HOH . 
H 3 HOH A 138 738 294 HOH HOH . 
H 3 HOH A 139 739 299 HOH HOH . 
H 3 HOH A 140 740 302 HOH HOH . 
H 3 HOH A 141 741 305 HOH HOH . 
H 3 HOH A 142 742 308 HOH HOH . 
H 3 HOH A 143 743 309 HOH HOH . 
H 3 HOH A 144 744 312 HOH HOH . 
H 3 HOH A 145 745 313 HOH HOH . 
H 3 HOH A 146 746 314 HOH HOH . 
H 3 HOH A 147 747 316 HOH HOH . 
H 3 HOH A 148 748 318 HOH HOH . 
H 3 HOH A 149 749 319 HOH HOH . 
H 3 HOH A 150 750 321 HOH HOH . 
H 3 HOH A 151 751 322 HOH HOH . 
H 3 HOH A 152 752 325 HOH HOH . 
H 3 HOH A 153 753 326 HOH HOH . 
I 3 HOH B 1 601 7 HOH HOH . 
I 3 HOH B 2 602 10 HOH HOH . 
I 3 HOH B 3 603 16 HOH HOH . 
I 3 HOH B 4 604 25 HOH HOH . 
I 3 HOH B 5 605 50 HOH HOH . 
I 3 HOH B 6 606 52 HOH HOH . 
I 3 HOH B 7 607 59 HOH HOH . 
I 3 HOH B 8 608 60 HOH HOH . 
I 3 HOH B 9 609 65 HOH HOH . 
I 3 HOH B 10 610 71 HOH HOH . 
I 3 HOH B 11 611 76 HOH HOH . 
I 3 HOH B 12 612 82 HOH HOH . 
I 3 HOH B 13 613 85 HOH HOH . 
I 3 HOH B 14 614 88 HOH HOH . 
I 3 HOH B 15 615 89 HOH HOH . 
I 3 HOH B 16 616 91 HOH HOH . 
I 3 HOH B 17 617 99 HOH HOH . 
I 3 HOH B 18 618 100 HOH HOH . 
I 3 HOH B 19 619 107 HOH HOH . 
I 3 HOH B 20 620 113 HOH HOH . 
I 3 HOH B 21 621 116 HOH HOH . 
I 3 HOH B 22 622 118 HOH HOH . 
I 3 HOH B 23 623 134 HOH HOH . 
I 3 HOH B 24 624 141 HOH HOH . 
I 3 HOH B 25 625 142 HOH HOH . 
I 3 HOH B 26 626 149 HOH HOH . 
I 3 HOH B 27 627 171 HOH HOH . 
I 3 HOH B 28 628 172 HOH HOH . 
I 3 HOH B 29 629 173 HOH HOH . 
I 3 HOH B 30 630 174 HOH HOH . 
I 3 HOH B 31 631 175 HOH HOH . 
I 3 HOH B 32 632 176 HOH HOH . 
I 3 HOH B 33 633 177 HOH HOH . 
I 3 HOH B 34 634 178 HOH HOH . 
I 3 HOH B 35 635 179 HOH HOH . 
I 3 HOH B 36 636 180 HOH HOH . 
I 3 HOH B 37 637 181 HOH HOH . 
I 3 HOH B 38 638 183 HOH HOH . 
I 3 HOH B 39 639 184 HOH HOH . 
I 3 HOH B 40 640 185 HOH HOH . 
I 3 HOH B 41 641 186 HOH HOH . 
I 3 HOH B 42 642 187 HOH HOH . 
I 3 HOH B 43 643 188 HOH HOH . 
I 3 HOH B 44 644 195 HOH HOH . 
I 3 HOH B 45 645 197 HOH HOH . 
I 3 HOH B 46 646 198 HOH HOH . 
I 3 HOH B 47 647 201 HOH HOH . 
I 3 HOH B 48 648 202 HOH HOH . 
I 3 HOH B 49 649 203 HOH HOH . 
I 3 HOH B 50 650 204 HOH HOH . 
I 3 HOH B 51 651 206 HOH HOH . 
I 3 HOH B 52 652 207 HOH HOH . 
I 3 HOH B 53 653 208 HOH HOH . 
I 3 HOH B 54 654 212 HOH HOH . 
I 3 HOH B 55 655 226 HOH HOH . 
I 3 HOH B 56 656 228 HOH HOH . 
I 3 HOH B 57 657 229 HOH HOH . 
I 3 HOH B 58 658 235 HOH HOH . 
I 3 HOH B 59 659 236 HOH HOH . 
I 3 HOH B 60 660 241 HOH HOH . 
I 3 HOH B 61 661 242 HOH HOH . 
I 3 HOH B 62 662 244 HOH HOH . 
I 3 HOH B 63 663 247 HOH HOH . 
I 3 HOH B 64 664 249 HOH HOH . 
I 3 HOH B 65 665 252 HOH HOH . 
I 3 HOH B 66 666 254 HOH HOH . 
I 3 HOH B 67 667 257 HOH HOH . 
I 3 HOH B 68 668 261 HOH HOH . 
I 3 HOH B 69 669 263 HOH HOH . 
I 3 HOH B 70 670 264 HOH HOH . 
I 3 HOH B 71 671 274 HOH HOH . 
I 3 HOH B 72 672 277 HOH HOH . 
I 3 HOH B 73 673 280 HOH HOH . 
I 3 HOH B 74 674 281 HOH HOH . 
I 3 HOH B 75 675 283 HOH HOH . 
I 3 HOH B 76 676 284 HOH HOH . 
I 3 HOH B 77 677 287 HOH HOH . 
I 3 HOH B 78 678 288 HOH HOH . 
I 3 HOH B 79 679 289 HOH HOH . 
I 3 HOH B 80 680 290 HOH HOH . 
I 3 HOH B 81 681 292 HOH HOH . 
I 3 HOH B 82 682 293 HOH HOH . 
I 3 HOH B 83 683 295 HOH HOH . 
I 3 HOH B 84 684 296 HOH HOH . 
I 3 HOH B 85 685 297 HOH HOH . 
I 3 HOH B 86 686 298 HOH HOH . 
I 3 HOH B 87 687 300 HOH HOH . 
I 3 HOH B 88 688 303 HOH HOH . 
I 3 HOH B 89 689 306 HOH HOH . 
I 3 HOH B 90 690 307 HOH HOH . 
I 3 HOH B 91 691 310 HOH HOH . 
I 3 HOH B 92 692 311 HOH HOH . 
I 3 HOH B 93 693 317 HOH HOH . 
I 3 HOH B 94 694 320 HOH HOH . 
I 3 HOH B 95 695 327 HOH HOH . 
I 3 HOH B 96 696 328 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 2.267 51.165 -17.821 0.6 37.84 ? C1 GOL 502 A 1 
HETATM 2 O O1 GOL . . . D 2 1.497 52.241 -17.315 0.6 37.92 ? O1 GOL 502 A 1 
HETATM 3 C C2 GOL . . . D 2 3.548 51.571 -18.56 0.6 38.38 ? C2 GOL 502 A 1 
HETATM 4 O O2 GOL . . . D 2 3.956 50.489 -19.354 0.6 35.56 ? O2 GOL 502 A 1 
HETATM 5 C C3 GOL . . . D 2 4.668 51.947 -17.59 0.6 40.78 ? C3 GOL 502 A 1 
HETATM 6 O O3 GOL . . . D 2 5.487 52.993 -18.065 0.6 42.43 ? O3 GOL 502 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#