data_4F7V # _model_server_result.job_id ID-w_WL8oEkhdB16rKj-vw _model_server_result.datetime_utc '2025-03-09 04:41:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4F7V # _exptl.entry_id 4F7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 634.625 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-{[2-({N-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]glycyl}amino)ethyl]sulfonyl}-5'-deoxyadenosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F7V _cell.length_a 53.118 _cell.length_b 70.581 _cell.length_c 36.261 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H30 N12 O8 S' _chem_comp.formula_weight 634.625 _chem_comp.id J1D _chem_comp.mon_nstd_flag . _chem_comp.name "5'-{[2-({N-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]glycyl}amino)ethyl]sulfonyl}-5'-deoxyadenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C16 J1D sing 160 n n C16 N10 J1D sing 161 n n C16 N8 J1D doub 162 n n N10 C17 J1D sing 163 n n N8 C22 J1D sing 164 n n C17 O5 J1D doub 165 n n C17 C23 J1D sing 166 n n C22 N12 J1D sing 167 n n C22 C23 J1D doub 168 n n N12 C19 J1D sing 169 n n C23 N11 J1D sing 170 n n C21 C19 J1D sing 171 n n N11 C18 J1D doub 172 n n C19 C18 J1D sing 173 n n C19 C20 J1D sing 174 n n C18 C15 J1D sing 175 n n O6 C13 J1D doub 176 n n C15 N7 J1D sing 177 n n C15 O4 J1D doub 178 n n N7 C14 J1D sing 179 n n N3 C7 J1D sing 180 n n C13 C14 J1D sing 181 n n C13 N6 J1D sing 182 n n C7 N4 J1D doub 183 n y C7 C6 J1D sing 184 n y N4 C8 J1D sing 185 n y N2 C6 J1D sing 186 n y N2 C5 J1D doub 187 n y C11 C12 J1D sing 188 n n C11 S1 J1D sing 189 n n C6 C9 J1D doub 190 n y N6 C12 J1D sing 191 n n C8 N5 J1D doub 192 n y C5 N1 J1D sing 193 n y O7 S1 J1D doub 194 n n C10 S1 J1D sing 195 n n C10 C1 J1D sing 196 n n C9 N5 J1D sing 197 n y C9 N1 J1D sing 198 n y S1 O8 J1D doub 199 n n N1 C4 J1D sing 200 n n C2 C1 J1D sing 201 n n C2 O2 J1D sing 202 n n C2 C3 J1D sing 203 n n C1 O1 J1D sing 204 n n O1 C4 J1D sing 205 n n C4 C3 J1D sing 206 n n C3 O3 J1D sing 207 n n C1 H1 J1D sing 208 n n C2 H2 J1D sing 209 n n O2 H3 J1D sing 210 n n C3 H4 J1D sing 211 n n O3 H5 J1D sing 212 n n C4 H6 J1D sing 213 n n C5 H7 J1D sing 214 n n N3 H8 J1D sing 215 n n N3 H9 J1D sing 216 n n C8 H10 J1D sing 217 n n C10 H11 J1D sing 218 n n C10 H12 J1D sing 219 n n C11 H13 J1D sing 220 n n C11 H14 J1D sing 221 n n N6 H15 J1D sing 222 n n C12 H16 J1D sing 223 n n C12 H17 J1D sing 224 n n C14 H18 J1D sing 225 n n C14 H19 J1D sing 226 n n N7 H20 J1D sing 227 n n N9 H21 J1D sing 228 n n N9 H22 J1D sing 229 n n N10 H23 J1D sing 230 n n C20 H24 J1D sing 231 n n C20 H25 J1D sing 232 n n C20 H26 J1D sing 233 n n C21 H27 J1D sing 234 n n C21 H28 J1D sing 235 n n C21 H29 J1D sing 236 n n N12 H31 J1D sing 237 n n # _atom_sites.entry_id 4F7V _atom_sites.fract_transf_matrix[1][1] 0.018826 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J1D A 1 201 171 J1D J1D . C 3 HOH A 1 301 201 HOH HOH . C 3 HOH A 2 302 202 HOH HOH . C 3 HOH A 3 303 203 HOH HOH . C 3 HOH A 4 304 204 HOH HOH . C 3 HOH A 5 305 205 HOH HOH . C 3 HOH A 6 306 206 HOH HOH . C 3 HOH A 7 307 207 HOH HOH . C 3 HOH A 8 308 208 HOH HOH . C 3 HOH A 9 309 209 HOH HOH . C 3 HOH A 10 310 210 HOH HOH . C 3 HOH A 11 311 211 HOH HOH . C 3 HOH A 12 312 212 HOH HOH . C 3 HOH A 13 313 213 HOH HOH . C 3 HOH A 14 314 214 HOH HOH . C 3 HOH A 15 315 215 HOH HOH . C 3 HOH A 16 316 216 HOH HOH . C 3 HOH A 17 317 217 HOH HOH . C 3 HOH A 18 318 218 HOH HOH . C 3 HOH A 19 319 219 HOH HOH . C 3 HOH A 20 320 220 HOH HOH . C 3 HOH A 21 321 221 HOH HOH . C 3 HOH A 22 322 222 HOH HOH . C 3 HOH A 23 323 223 HOH HOH . C 3 HOH A 24 324 224 HOH HOH . C 3 HOH A 25 325 225 HOH HOH . C 3 HOH A 26 326 226 HOH HOH . C 3 HOH A 27 327 227 HOH HOH . C 3 HOH A 28 328 228 HOH HOH . C 3 HOH A 29 329 229 HOH HOH . C 3 HOH A 30 330 230 HOH HOH . C 3 HOH A 31 331 231 HOH HOH . C 3 HOH A 32 332 232 HOH HOH . C 3 HOH A 33 333 233 HOH HOH . C 3 HOH A 34 334 234 HOH HOH . C 3 HOH A 35 335 235 HOH HOH . C 3 HOH A 36 336 236 HOH HOH . C 3 HOH A 37 337 237 HOH HOH . C 3 HOH A 38 338 238 HOH HOH . C 3 HOH A 39 339 239 HOH HOH . C 3 HOH A 40 340 240 HOH HOH . C 3 HOH A 41 341 241 HOH HOH . C 3 HOH A 42 342 242 HOH HOH . C 3 HOH A 43 343 243 HOH HOH . C 3 HOH A 44 344 244 HOH HOH . C 3 HOH A 45 345 245 HOH HOH . C 3 HOH A 46 346 246 HOH HOH . C 3 HOH A 47 347 247 HOH HOH . C 3 HOH A 48 348 248 HOH HOH . C 3 HOH A 49 349 249 HOH HOH . C 3 HOH A 50 350 250 HOH HOH . C 3 HOH A 51 351 251 HOH HOH . C 3 HOH A 52 352 252 HOH HOH . C 3 HOH A 53 353 253 HOH HOH . C 3 HOH A 54 354 254 HOH HOH . C 3 HOH A 55 355 255 HOH HOH . C 3 HOH A 56 356 256 HOH HOH . C 3 HOH A 57 357 257 HOH HOH . C 3 HOH A 58 358 258 HOH HOH . C 3 HOH A 59 359 259 HOH HOH . C 3 HOH A 60 360 260 HOH HOH . C 3 HOH A 61 361 261 HOH HOH . C 3 HOH A 62 362 262 HOH HOH . C 3 HOH A 63 363 263 HOH HOH . C 3 HOH A 64 364 264 HOH HOH . C 3 HOH A 65 365 265 HOH HOH . C 3 HOH A 66 366 266 HOH HOH . C 3 HOH A 67 367 267 HOH HOH . C 3 HOH A 68 368 268 HOH HOH . C 3 HOH A 69 369 269 HOH HOH . C 3 HOH A 70 370 270 HOH HOH . C 3 HOH A 71 371 271 HOH HOH . C 3 HOH A 72 372 272 HOH HOH . C 3 HOH A 73 373 273 HOH HOH . C 3 HOH A 74 374 274 HOH HOH . C 3 HOH A 75 375 275 HOH HOH . C 3 HOH A 76 376 276 HOH HOH . C 3 HOH A 77 377 277 HOH HOH . C 3 HOH A 78 378 278 HOH HOH . C 3 HOH A 79 379 279 HOH HOH . C 3 HOH A 80 380 280 HOH HOH . C 3 HOH A 81 381 281 HOH HOH . C 3 HOH A 82 382 282 HOH HOH . C 3 HOH A 83 383 283 HOH HOH . C 3 HOH A 84 384 284 HOH HOH . C 3 HOH A 85 385 285 HOH HOH . C 3 HOH A 86 386 286 HOH HOH . C 3 HOH A 87 387 287 HOH HOH . C 3 HOH A 88 388 288 HOH HOH . C 3 HOH A 89 389 289 HOH HOH . C 3 HOH A 90 390 290 HOH HOH . C 3 HOH A 91 391 291 HOH HOH . C 3 HOH A 92 392 292 HOH HOH . C 3 HOH A 93 393 293 HOH HOH . C 3 HOH A 94 394 294 HOH HOH . C 3 HOH A 95 395 295 HOH HOH . C 3 HOH A 96 396 296 HOH HOH . C 3 HOH A 97 397 297 HOH HOH . C 3 HOH A 98 398 298 HOH HOH . C 3 HOH A 99 399 299 HOH HOH . C 3 HOH A 100 400 300 HOH HOH . C 3 HOH A 101 401 301 HOH HOH . C 3 HOH A 102 402 302 HOH HOH . C 3 HOH A 103 403 303 HOH HOH . C 3 HOH A 104 404 304 HOH HOH . C 3 HOH A 105 405 305 HOH HOH . C 3 HOH A 106 406 306 HOH HOH . C 3 HOH A 107 407 307 HOH HOH . C 3 HOH A 108 408 308 HOH HOH . C 3 HOH A 109 409 309 HOH HOH . C 3 HOH A 110 410 310 HOH HOH . C 3 HOH A 111 411 311 HOH HOH . C 3 HOH A 112 412 312 HOH HOH . C 3 HOH A 113 413 313 HOH HOH . C 3 HOH A 114 414 314 HOH HOH . C 3 HOH A 115 415 315 HOH HOH . C 3 HOH A 116 416 316 HOH HOH . C 3 HOH A 117 417 317 HOH HOH . C 3 HOH A 118 418 318 HOH HOH . C 3 HOH A 119 419 319 HOH HOH . C 3 HOH A 120 420 320 HOH HOH . C 3 HOH A 121 421 321 HOH HOH . C 3 HOH A 122 422 322 HOH HOH . C 3 HOH A 123 423 323 HOH HOH . C 3 HOH A 124 424 324 HOH HOH . C 3 HOH A 125 425 325 HOH HOH . C 3 HOH A 126 426 326 HOH HOH . C 3 HOH A 127 427 327 HOH HOH . C 3 HOH A 128 428 328 HOH HOH . C 3 HOH A 129 429 329 HOH HOH . C 3 HOH A 130 430 330 HOH HOH . C 3 HOH A 131 431 331 HOH HOH . C 3 HOH A 132 432 332 HOH HOH . C 3 HOH A 133 433 333 HOH HOH . C 3 HOH A 134 434 334 HOH HOH . C 3 HOH A 135 435 335 HOH HOH . C 3 HOH A 136 436 336 HOH HOH . C 3 HOH A 137 437 337 HOH HOH . C 3 HOH A 138 438 338 HOH HOH . C 3 HOH A 139 439 339 HOH HOH . C 3 HOH A 140 440 340 HOH HOH . C 3 HOH A 141 441 341 HOH HOH . C 3 HOH A 142 442 342 HOH HOH . C 3 HOH A 143 443 343 HOH HOH . C 3 HOH A 144 444 344 HOH HOH . C 3 HOH A 145 445 345 HOH HOH . C 3 HOH A 146 446 346 HOH HOH . C 3 HOH A 147 447 347 HOH HOH . C 3 HOH A 148 448 348 HOH HOH . C 3 HOH A 149 449 349 HOH HOH . C 3 HOH A 150 450 350 HOH HOH . C 3 HOH A 151 451 351 HOH HOH . C 3 HOH A 152 452 352 HOH HOH . C 3 HOH A 153 453 353 HOH HOH . C 3 HOH A 154 454 354 HOH HOH . C 3 HOH A 155 455 355 HOH HOH . C 3 HOH A 156 456 356 HOH HOH . C 3 HOH A 157 457 357 HOH HOH . C 3 HOH A 158 458 358 HOH HOH . C 3 HOH A 159 459 359 HOH HOH . C 3 HOH A 160 460 360 HOH HOH . C 3 HOH A 161 461 361 HOH HOH . C 3 HOH A 162 462 362 HOH HOH . C 3 HOH A 163 463 363 HOH HOH . C 3 HOH A 164 464 364 HOH HOH . C 3 HOH A 165 465 365 HOH HOH . C 3 HOH A 166 466 366 HOH HOH . C 3 HOH A 167 467 367 HOH HOH . C 3 HOH A 168 468 368 HOH HOH . C 3 HOH A 169 469 369 HOH HOH . C 3 HOH A 170 470 370 HOH HOH . C 3 HOH A 171 471 371 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J1D . . . B 2 4.865 18.014 14.149 1 16.71 ? C1 J1D 201 A 1 HETATM 2 O O1 J1D . . . B 2 4.307 16.67 14.372 1 16.18 ? O1 J1D 201 A 1 HETATM 3 C C2 J1D . . . B 2 6.388 17.797 14.033 1 17.86 ? C2 J1D 201 A 1 HETATM 4 O O2 J1D . . . B 2 7.04 18.945 14.441 1 19 ? O2 J1D 201 A 1 HETATM 5 C C3 J1D . . . B 2 6.607 16.59 15.038 1 23.99 ? C3 J1D 201 A 1 HETATM 6 O O3 J1D . . . B 2 6.623 16.897 16.384 1 20.42 ? O3 J1D 201 A 1 HETATM 7 C C4 J1D . . . B 2 5.335 15.729 14.726 1 17.23 ? C4 J1D 201 A 1 HETATM 8 N N1 J1D . . . B 2 5.529 14.892 13.534 1 21.14 ? N1 J1D 201 A 1 HETATM 9 C C5 J1D . . . B 2 6.684 14.643 12.727 1 17.23 ? C5 J1D 201 A 1 HETATM 10 N N2 J1D . . . B 2 6.413 13.834 11.701 1 12.11 ? N2 J1D 201 A 1 HETATM 11 C C6 J1D . . . B 2 5.049 13.569 11.813 1 15.5 ? C6 J1D 201 A 1 HETATM 12 C C7 J1D . . . B 2 4.198 12.82 11.038 1 14.71 ? C7 J1D 201 A 1 HETATM 13 N N3 J1D . . . B 2 4.69 12.193 9.907 1 7.47 ? N3 J1D 201 A 1 HETATM 14 N N4 J1D . . . B 2 2.872 12.704 11.403 1 14.4 ? N4 J1D 201 A 1 HETATM 15 C C8 J1D . . . B 2 2.439 13.386 12.512 1 13.09 ? C8 J1D 201 A 1 HETATM 16 N N5 J1D . . . B 2 3.161 14.13 13.329 1 14.48 ? N5 J1D 201 A 1 HETATM 17 C C9 J1D . . . B 2 4.48 14.21 12.938 1 15.83 ? C9 J1D 201 A 1 HETATM 18 C C10 J1D . . . B 2 4.291 18.747 12.934 1 24.07 ? C10 J1D 201 A 1 HETATM 19 S S1 J1D . . . B 2 2.529 18.9 13.01 1 20.65 ? S1 J1D 201 A 1 HETATM 20 C C11 J1D . . . B 2 2.133 19.888 11.709 1 22.61 ? C11 J1D 201 A 1 HETATM 21 N N6 J1D . . . B 2 3.66 21.734 11.989 1 26.65 ? N6 J1D 201 A 1 HETATM 22 C C12 J1D . . . B 2 2.244 21.375 12.03 1 20.71 ? C12 J1D 201 A 1 HETATM 23 C C13 J1D . . . B 2 4.218 22.094 10.781 1 29.7 ? C13 J1D 201 A 1 HETATM 24 C C14 J1D . . . B 2 5.677 22.46 10.841 1 20.08 ? C14 J1D 201 A 1 HETATM 25 N N7 J1D . . . B 2 5.947 23.505 9.872 1 21.07 ? N7 J1D 201 A 1 HETATM 26 C C15 J1D . . . B 2 5.309 24.738 9.861 1 30.76 ? C15 J1D 201 A 1 HETATM 27 O O4 J1D . . . B 2 4.436 25.062 10.661 1 29.36 ? O4 J1D 201 A 1 HETATM 28 N N8 J1D . . . B 2 7.201 27.892 5.598 1 17.4 ? N8 J1D 201 A 1 HETATM 29 C C16 J1D . . . B 2 8.369 27.493 5.134 1 13.72 ? C16 J1D 201 A 1 HETATM 30 N N9 J1D . . . B 2 8.99 28.125 4.057 1 14.35 ? N9 J1D 201 A 1 HETATM 31 N N10 J1D . . . B 2 9.08 26.453 5.586 1 13.07 ? N10 J1D 201 A 1 HETATM 32 C C17 J1D . . . B 2 8.687 25.662 6.678 1 8.06 ? C17 J1D 201 A 1 HETATM 33 O O5 J1D . . . B 2 9.428 24.758 6.998 1 8.9 ? O5 J1D 201 A 1 HETATM 34 N N11 J1D . . . B 2 6.955 25.324 8.275 1 17.75 ? N11 J1D 201 A 1 HETATM 35 C C18 J1D . . . B 2 5.789 25.629 8.757 1 24.07 ? C18 J1D 201 A 1 HETATM 36 C C19 J1D . . . B 2 4.929 26.801 8.359 1 22.76 ? C19 J1D 201 A 1 HETATM 37 C C20 J1D . . . B 2 4.826 27.803 9.52 1 29.53 ? C20 J1D 201 A 1 HETATM 38 C C21 J1D . . . B 2 3.597 26.274 7.839 1 30.32 ? C21 J1D 201 A 1 HETATM 39 N N12 J1D . . . B 2 5.544 27.528 7.216 1 20.21 ? N12 J1D 201 A 1 HETATM 40 C C22 J1D . . . B 2 6.718 27.138 6.682 1 15.92 ? C22 J1D 201 A 1 HETATM 41 C C23 J1D . . . B 2 7.417 26.064 7.225 1 15.3 ? C23 J1D 201 A 1 HETATM 42 O O6 J1D . . . B 2 3.555 22.132 9.751 1 25.64 ? O6 J1D 201 A 1 HETATM 43 O O7 J1D . . . B 2 2.012 17.614 12.737 1 19.7 ? O7 J1D 201 A 1 HETATM 44 O O8 J1D . . . B 2 2.317 19.605 14.237 1 17.67 ? O8 J1D 201 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 44 #