data_4F8B # _model_server_result.job_id UblIj4NbmabzJ4fCRHg5ig _model_server_result.datetime_utc '2024-11-26 05:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f8b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":202}' # _entry.id 4F8B # _exptl.entry_id 4F8B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4F8B _cell.length_a 93.507 _cell.length_b 93.507 _cell.length_c 193.696 _cell.Z_PDB 30 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F8B _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 56 B CYS 55 1_555 F C77 GD1 . B GD1 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? covale ? covale2 C SG CYS 56 C CYS 55 1_555 I C77 GD1 . C GD1 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? covale ? covale3 D SG CYS 56 D CYS 55 1_555 K C77 GD1 . D GD1 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? covale ? covale4 E SG CYS 56 E CYS 55 1_555 N C77 GD1 . E GD1 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc1 B OD2 ASP 163 B ASP 162 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc2 B OXT ARG 165 B ARG 164 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc3 G MG MG . B MG 202 1_555 Q O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc4 G MG MG . B MG 202 1_555 Q O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc5 C OD1 ASP 163 C ASP 162 1_555 J MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc6 C OXT ARG 165 C ARG 164 1_555 J MG MG . C MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc7 J MG MG . C MG 202 1_555 R O HOH . C HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc8 J MG MG . C MG 202 1_555 R O HOH . C HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc9 D OD2 ASP 163 D ASP 162 1_555 L MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc10 D OXT ARG 165 D ARG 164 1_555 L MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc11 L MG MG . D MG 202 1_555 S O HOH . D HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc12 L MG MG . D MG 202 1_555 S O HOH . D HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc13 L MG MG . D MG 202 1_555 S O HOH . D HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc14 E OD2 ASP 163 E ASP 162 1_555 O MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc15 E OXT ARG 165 E ARG 164 1_555 O MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc16 O MG MG . E MG 202 1_555 T O HOH . E HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc17 O MG MG . E MG 202 1_555 T O HOH . E HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc18 O MG MG . E MG 202 1_555 T O HOH . E HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4F8B _atom_sites.fract_transf_matrix[1][1] 0.010694 _atom_sites.fract_transf_matrix[1][2] 0.006174 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 GD1 B 1 201 201 GD1 GD1 . G 3 MG B 1 202 2 MG MG . H 4 PO4 B 1 203 1 PO4 PO4 . I 2 GD1 C 1 201 201 GD1 GD1 . J 3 MG C 1 202 3 MG MG . K 2 GD1 D 1 201 201 GD1 GD1 . L 3 MG D 1 202 4 MG MG . M 5 PE4 D 1 203 302 PE4 PE4 . N 2 GD1 E 1 201 201 GD1 GD1 . O 3 MG E 1 202 5 MG MG . P 6 HOH A 1 201 12 HOH HOH . P 6 HOH A 2 202 15 HOH HOH . P 6 HOH A 3 203 24 HOH HOH . P 6 HOH A 4 204 31 HOH HOH . P 6 HOH A 5 205 32 HOH HOH . P 6 HOH A 6 206 33 HOH HOH . P 6 HOH A 7 207 37 HOH HOH . P 6 HOH A 8 208 39 HOH HOH . P 6 HOH A 9 209 58 HOH HOH . P 6 HOH A 10 210 77 HOH HOH . P 6 HOH A 11 211 78 HOH HOH . P 6 HOH A 12 212 83 HOH HOH . P 6 HOH A 13 213 87 HOH HOH . P 6 HOH A 14 214 99 HOH HOH . P 6 HOH A 15 215 100 HOH HOH . P 6 HOH A 16 216 101 HOH HOH . P 6 HOH A 17 217 103 HOH HOH . P 6 HOH A 18 218 106 HOH HOH . P 6 HOH A 19 219 107 HOH HOH . P 6 HOH A 20 220 108 HOH HOH . P 6 HOH A 21 221 111 HOH HOH . P 6 HOH A 22 222 114 HOH HOH . P 6 HOH A 23 223 118 HOH HOH . P 6 HOH A 24 224 119 HOH HOH . P 6 HOH A 25 225 123 HOH HOH . P 6 HOH A 26 226 127 HOH HOH . P 6 HOH A 27 227 133 HOH HOH . P 6 HOH A 28 228 134 HOH HOH . P 6 HOH A 29 229 135 HOH HOH . P 6 HOH A 30 230 138 HOH HOH . P 6 HOH A 31 231 140 HOH HOH . P 6 HOH A 32 232 142 HOH HOH . Q 6 HOH B 1 301 5 HOH HOH . Q 6 HOH B 2 302 6 HOH HOH . Q 6 HOH B 3 303 11 HOH HOH . Q 6 HOH B 4 304 21 HOH HOH . Q 6 HOH B 5 305 25 HOH HOH . Q 6 HOH B 6 306 27 HOH HOH . Q 6 HOH B 7 307 36 HOH HOH . Q 6 HOH B 8 308 38 HOH HOH . Q 6 HOH B 9 309 45 HOH HOH . Q 6 HOH B 10 310 56 HOH HOH . Q 6 HOH B 11 311 60 HOH HOH . Q 6 HOH B 12 312 61 HOH HOH . Q 6 HOH B 13 313 69 HOH HOH . Q 6 HOH B 14 314 72 HOH HOH . Q 6 HOH B 15 315 73 HOH HOH . Q 6 HOH B 16 316 76 HOH HOH . Q 6 HOH B 17 317 79 HOH HOH . Q 6 HOH B 18 318 82 HOH HOH . Q 6 HOH B 19 319 84 HOH HOH . Q 6 HOH B 20 320 89 HOH HOH . Q 6 HOH B 21 321 90 HOH HOH . Q 6 HOH B 22 322 93 HOH HOH . Q 6 HOH B 23 323 102 HOH HOH . Q 6 HOH B 24 324 112 HOH HOH . Q 6 HOH B 25 325 113 HOH HOH . Q 6 HOH B 26 326 120 HOH HOH . Q 6 HOH B 27 327 125 HOH HOH . Q 6 HOH B 28 328 130 HOH HOH . Q 6 HOH B 29 329 131 HOH HOH . Q 6 HOH B 30 330 137 HOH HOH . Q 6 HOH B 31 331 139 HOH HOH . Q 6 HOH B 32 332 141 HOH HOH . Q 6 HOH B 33 333 145 HOH HOH . Q 6 HOH B 34 334 146 HOH HOH . Q 6 HOH B 35 335 149 HOH HOH . Q 6 HOH B 36 336 151 HOH HOH . Q 6 HOH B 37 337 152 HOH HOH . Q 6 HOH B 38 338 155 HOH HOH . Q 6 HOH B 39 339 156 HOH HOH . Q 6 HOH B 40 340 163 HOH HOH . Q 6 HOH B 41 341 164 HOH HOH . R 6 HOH C 1 301 7 HOH HOH . R 6 HOH C 2 302 8 HOH HOH . R 6 HOH C 3 303 16 HOH HOH . R 6 HOH C 4 304 19 HOH HOH . R 6 HOH C 5 305 20 HOH HOH . R 6 HOH C 6 306 22 HOH HOH . R 6 HOH C 7 307 23 HOH HOH . R 6 HOH C 8 308 28 HOH HOH . R 6 HOH C 9 309 29 HOH HOH . R 6 HOH C 10 310 34 HOH HOH . R 6 HOH C 11 311 35 HOH HOH . R 6 HOH C 12 312 44 HOH HOH . R 6 HOH C 13 313 46 HOH HOH . R 6 HOH C 14 314 50 HOH HOH . R 6 HOH C 15 315 53 HOH HOH . R 6 HOH C 16 316 54 HOH HOH . R 6 HOH C 17 317 55 HOH HOH . R 6 HOH C 18 318 59 HOH HOH . R 6 HOH C 19 319 65 HOH HOH . R 6 HOH C 20 320 66 HOH HOH . R 6 HOH C 21 321 70 HOH HOH . R 6 HOH C 22 322 80 HOH HOH . R 6 HOH C 23 323 85 HOH HOH . R 6 HOH C 24 324 86 HOH HOH . R 6 HOH C 25 325 88 HOH HOH . R 6 HOH C 26 326 91 HOH HOH . R 6 HOH C 27 327 92 HOH HOH . R 6 HOH C 28 328 109 HOH HOH . R 6 HOH C 29 329 115 HOH HOH . R 6 HOH C 30 330 126 HOH HOH . R 6 HOH C 31 331 129 HOH HOH . R 6 HOH C 32 332 147 HOH HOH . R 6 HOH C 33 333 148 HOH HOH . R 6 HOH C 34 334 150 HOH HOH . R 6 HOH C 35 335 153 HOH HOH . R 6 HOH C 36 336 154 HOH HOH . R 6 HOH C 37 337 162 HOH HOH . R 6 HOH C 38 338 165 HOH HOH . S 6 HOH D 1 301 1 HOH HOH . S 6 HOH D 2 302 9 HOH HOH . S 6 HOH D 3 303 10 HOH HOH . S 6 HOH D 4 304 13 HOH HOH . S 6 HOH D 5 305 14 HOH HOH . S 6 HOH D 6 306 17 HOH HOH . S 6 HOH D 7 307 18 HOH HOH . S 6 HOH D 8 308 26 HOH HOH . S 6 HOH D 9 309 40 HOH HOH . S 6 HOH D 10 310 41 HOH HOH . S 6 HOH D 11 311 43 HOH HOH . S 6 HOH D 12 312 48 HOH HOH . S 6 HOH D 13 313 51 HOH HOH . S 6 HOH D 14 314 52 HOH HOH . S 6 HOH D 15 315 62 HOH HOH . S 6 HOH D 16 316 63 HOH HOH . S 6 HOH D 17 317 75 HOH HOH . S 6 HOH D 18 318 95 HOH HOH . S 6 HOH D 19 319 97 HOH HOH . S 6 HOH D 20 320 98 HOH HOH . S 6 HOH D 21 321 104 HOH HOH . S 6 HOH D 22 322 110 HOH HOH . S 6 HOH D 23 323 116 HOH HOH . S 6 HOH D 24 324 122 HOH HOH . S 6 HOH D 25 325 128 HOH HOH . S 6 HOH D 26 326 132 HOH HOH . S 6 HOH D 27 327 136 HOH HOH . S 6 HOH D 28 328 144 HOH HOH . S 6 HOH D 29 329 157 HOH HOH . S 6 HOH D 30 330 159 HOH HOH . S 6 HOH D 31 331 160 HOH HOH . S 6 HOH D 32 332 161 HOH HOH . T 6 HOH E 1 301 2 HOH HOH . T 6 HOH E 2 302 3 HOH HOH . T 6 HOH E 3 303 4 HOH HOH . T 6 HOH E 4 304 30 HOH HOH . T 6 HOH E 5 305 42 HOH HOH . T 6 HOH E 6 306 47 HOH HOH . T 6 HOH E 7 307 49 HOH HOH . T 6 HOH E 8 308 57 HOH HOH . T 6 HOH E 9 309 64 HOH HOH . T 6 HOH E 10 310 67 HOH HOH . T 6 HOH E 11 311 68 HOH HOH . T 6 HOH E 12 312 71 HOH HOH . T 6 HOH E 13 313 74 HOH HOH . T 6 HOH E 14 314 81 HOH HOH . T 6 HOH E 15 315 94 HOH HOH . T 6 HOH E 16 316 96 HOH HOH . T 6 HOH E 17 317 105 HOH HOH . T 6 HOH E 18 318 117 HOH HOH . T 6 HOH E 19 319 121 HOH HOH . T 6 HOH E 20 320 124 HOH HOH . T 6 HOH E 21 321 143 HOH HOH . T 6 HOH E 22 322 158 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 3 _atom_site.Cartn_x 32.447 _atom_site.Cartn_y 34.315 _atom_site.Cartn_z -4.943 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #