data_4F8C # _model_server_result.job_id xWvaGdH-K2czJGmcMPHKBw _model_server_result.datetime_utc '2024-11-04 20:22:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 4F8C # _exptl.entry_id 4F8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4F8C _cell.length_a 125.359 _cell.length_b 125.359 _cell.length_c 169.93 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4F8C _atom_sites.fract_transf_matrix[1][1] 0.007977 _atom_sites.fract_transf_matrix[1][2] 0.004606 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO A 1 301 1 EDO EDO . F 3 EDO A 1 302 1 EDO EDO . G 3 EDO C 1 301 1 EDO EDO . H 3 EDO C 1 302 1 EDO EDO . I 4 HOH A 1 401 1 HOH HOH . I 4 HOH A 2 402 2 HOH HOH . I 4 HOH A 3 403 3 HOH HOH . I 4 HOH A 4 404 4 HOH HOH . I 4 HOH A 5 405 5 HOH HOH . I 4 HOH A 6 406 7 HOH HOH . I 4 HOH A 7 407 8 HOH HOH . I 4 HOH A 8 408 9 HOH HOH . I 4 HOH A 9 409 12 HOH HOH . I 4 HOH A 10 410 15 HOH HOH . I 4 HOH A 11 411 16 HOH HOH . I 4 HOH A 12 412 17 HOH HOH . I 4 HOH A 13 413 18 HOH HOH . I 4 HOH A 14 414 19 HOH HOH . I 4 HOH A 15 415 21 HOH HOH . I 4 HOH A 16 416 22 HOH HOH . I 4 HOH A 17 417 23 HOH HOH . I 4 HOH A 18 418 24 HOH HOH . I 4 HOH A 19 419 25 HOH HOH . I 4 HOH A 20 420 26 HOH HOH . I 4 HOH A 21 421 30 HOH HOH . I 4 HOH A 22 422 31 HOH HOH . I 4 HOH A 23 423 32 HOH HOH . I 4 HOH A 24 424 33 HOH HOH . I 4 HOH A 25 425 34 HOH HOH . I 4 HOH A 26 426 35 HOH HOH . I 4 HOH A 27 427 36 HOH HOH . I 4 HOH A 28 428 37 HOH HOH . I 4 HOH A 29 429 38 HOH HOH . I 4 HOH A 30 430 39 HOH HOH . I 4 HOH A 31 431 41 HOH HOH . I 4 HOH A 32 432 42 HOH HOH . I 4 HOH A 33 433 43 HOH HOH . I 4 HOH A 34 434 44 HOH HOH . I 4 HOH A 35 435 46 HOH HOH . I 4 HOH A 36 436 48 HOH HOH . I 4 HOH A 37 437 49 HOH HOH . I 4 HOH A 38 438 56 HOH HOH . I 4 HOH A 39 439 57 HOH HOH . I 4 HOH A 40 440 58 HOH HOH . I 4 HOH A 41 441 59 HOH HOH . I 4 HOH A 42 442 60 HOH HOH . I 4 HOH A 43 443 61 HOH HOH . I 4 HOH A 44 444 64 HOH HOH . I 4 HOH A 45 445 65 HOH HOH . I 4 HOH A 46 446 66 HOH HOH . I 4 HOH A 47 447 67 HOH HOH . I 4 HOH A 48 448 68 HOH HOH . I 4 HOH A 49 449 69 HOH HOH . I 4 HOH A 50 450 70 HOH HOH . I 4 HOH A 51 451 71 HOH HOH . I 4 HOH A 52 452 72 HOH HOH . I 4 HOH A 53 453 73 HOH HOH . I 4 HOH A 54 454 74 HOH HOH . I 4 HOH A 55 455 75 HOH HOH . I 4 HOH A 56 456 76 HOH HOH . I 4 HOH A 57 457 77 HOH HOH . I 4 HOH A 58 458 78 HOH HOH . I 4 HOH A 59 459 80 HOH HOH . I 4 HOH A 60 460 81 HOH HOH . I 4 HOH A 61 461 82 HOH HOH . I 4 HOH A 62 462 83 HOH HOH . I 4 HOH A 63 463 84 HOH HOH . I 4 HOH A 64 464 86 HOH HOH . I 4 HOH A 65 465 87 HOH HOH . I 4 HOH A 66 466 89 HOH HOH . I 4 HOH A 67 467 100 HOH HOH . I 4 HOH A 68 468 176 HOH HOH . I 4 HOH A 69 469 178 HOH HOH . I 4 HOH A 70 470 179 HOH HOH . I 4 HOH A 71 471 180 HOH HOH . I 4 HOH A 72 472 181 HOH HOH . I 4 HOH A 73 473 182 HOH HOH . I 4 HOH A 74 474 183 HOH HOH . I 4 HOH A 75 475 208 HOH HOH . I 4 HOH A 76 476 209 HOH HOH . I 4 HOH A 77 477 210 HOH HOH . I 4 HOH A 78 478 211 HOH HOH . I 4 HOH A 79 479 212 HOH HOH . I 4 HOH A 80 480 213 HOH HOH . I 4 HOH A 81 481 214 HOH HOH . I 4 HOH A 82 482 215 HOH HOH . I 4 HOH A 83 483 216 HOH HOH . I 4 HOH A 84 484 217 HOH HOH . I 4 HOH A 85 485 218 HOH HOH . I 4 HOH A 86 486 219 HOH HOH . I 4 HOH A 87 487 220 HOH HOH . I 4 HOH A 88 488 221 HOH HOH . I 4 HOH A 89 489 222 HOH HOH . I 4 HOH A 90 490 223 HOH HOH . I 4 HOH A 91 491 224 HOH HOH . I 4 HOH A 92 492 225 HOH HOH . I 4 HOH A 93 493 226 HOH HOH . I 4 HOH A 94 494 232 HOH HOH . I 4 HOH A 95 495 233 HOH HOH . I 4 HOH A 96 496 255 HOH HOH . I 4 HOH A 97 497 262 HOH HOH . I 4 HOH A 98 498 263 HOH HOH . I 4 HOH A 99 499 264 HOH HOH . I 4 HOH A 100 500 265 HOH HOH . I 4 HOH A 101 501 266 HOH HOH . I 4 HOH A 102 502 267 HOH HOH . I 4 HOH A 103 503 268 HOH HOH . I 4 HOH A 104 504 275 HOH HOH . I 4 HOH A 105 505 279 HOH HOH . I 4 HOH A 106 506 280 HOH HOH . I 4 HOH A 107 507 281 HOH HOH . I 4 HOH A 108 508 282 HOH HOH . I 4 HOH A 109 509 283 HOH HOH . I 4 HOH A 110 510 284 HOH HOH . I 4 HOH A 111 511 285 HOH HOH . I 4 HOH A 112 512 289 HOH HOH . I 4 HOH A 113 513 290 HOH HOH . I 4 HOH A 114 514 292 HOH HOH . I 4 HOH A 115 515 293 HOH HOH . I 4 HOH A 116 516 294 HOH HOH . I 4 HOH A 117 517 295 HOH HOH . I 4 HOH A 118 518 296 HOH HOH . I 4 HOH A 119 519 298 HOH HOH . I 4 HOH A 120 520 299 HOH HOH . I 4 HOH A 121 521 301 HOH HOH . I 4 HOH A 122 522 302 HOH HOH . I 4 HOH A 123 523 303 HOH HOH . I 4 HOH A 124 524 304 HOH HOH . I 4 HOH A 125 525 305 HOH HOH . I 4 HOH A 126 526 306 HOH HOH . I 4 HOH A 127 527 309 HOH HOH . I 4 HOH A 128 528 314 HOH HOH . I 4 HOH A 129 529 315 HOH HOH . J 4 HOH B 1 101 10 HOH HOH . J 4 HOH B 2 102 11 HOH HOH . J 4 HOH B 3 103 13 HOH HOH . J 4 HOH B 4 104 14 HOH HOH . J 4 HOH B 5 105 20 HOH HOH . J 4 HOH B 6 106 28 HOH HOH . J 4 HOH B 7 107 29 HOH HOH . J 4 HOH B 8 108 40 HOH HOH . J 4 HOH B 9 109 50 HOH HOH . J 4 HOH B 10 110 51 HOH HOH . J 4 HOH B 11 111 52 HOH HOH . J 4 HOH B 12 112 53 HOH HOH . J 4 HOH B 13 113 54 HOH HOH . J 4 HOH B 14 114 55 HOH HOH . J 4 HOH B 15 115 62 HOH HOH . J 4 HOH B 16 116 63 HOH HOH . J 4 HOH B 17 117 88 HOH HOH . J 4 HOH B 18 118 90 HOH HOH . J 4 HOH B 19 119 91 HOH HOH . J 4 HOH B 20 120 92 HOH HOH . J 4 HOH B 21 121 93 HOH HOH . J 4 HOH B 22 122 94 HOH HOH . J 4 HOH B 23 123 95 HOH HOH . J 4 HOH B 24 124 96 HOH HOH . J 4 HOH B 25 125 97 HOH HOH . J 4 HOH B 26 126 184 HOH HOH . J 4 HOH B 27 127 185 HOH HOH . J 4 HOH B 28 128 227 HOH HOH . J 4 HOH B 29 129 228 HOH HOH . J 4 HOH B 30 130 234 HOH HOH . J 4 HOH B 31 131 297 HOH HOH . J 4 HOH B 32 132 300 HOH HOH . J 4 HOH B 33 133 307 HOH HOH . J 4 HOH B 34 134 308 HOH HOH . K 4 HOH C 1 401 6 HOH HOH . K 4 HOH C 2 402 27 HOH HOH . K 4 HOH C 3 403 45 HOH HOH . K 4 HOH C 4 404 47 HOH HOH . K 4 HOH C 5 405 79 HOH HOH . K 4 HOH C 6 406 85 HOH HOH . K 4 HOH C 7 407 98 HOH HOH . K 4 HOH C 8 408 99 HOH HOH . K 4 HOH C 9 409 101 HOH HOH . K 4 HOH C 10 410 104 HOH HOH . K 4 HOH C 11 411 105 HOH HOH . K 4 HOH C 12 412 106 HOH HOH . K 4 HOH C 13 413 107 HOH HOH . K 4 HOH C 14 414 108 HOH HOH . K 4 HOH C 15 415 109 HOH HOH . K 4 HOH C 16 416 110 HOH HOH . K 4 HOH C 17 417 111 HOH HOH . K 4 HOH C 18 418 113 HOH HOH . K 4 HOH C 19 419 114 HOH HOH . K 4 HOH C 20 420 115 HOH HOH . K 4 HOH C 21 421 116 HOH HOH . K 4 HOH C 22 422 117 HOH HOH . K 4 HOH C 23 423 118 HOH HOH . K 4 HOH C 24 424 119 HOH HOH . K 4 HOH C 25 425 120 HOH HOH . K 4 HOH C 26 426 121 HOH HOH . K 4 HOH C 27 427 122 HOH HOH . K 4 HOH C 28 428 123 HOH HOH . K 4 HOH C 29 429 124 HOH HOH . K 4 HOH C 30 430 125 HOH HOH . K 4 HOH C 31 431 126 HOH HOH . K 4 HOH C 32 432 127 HOH HOH . K 4 HOH C 33 433 128 HOH HOH . K 4 HOH C 34 434 129 HOH HOH . K 4 HOH C 35 435 130 HOH HOH . K 4 HOH C 36 436 131 HOH HOH . K 4 HOH C 37 437 132 HOH HOH . K 4 HOH C 38 438 133 HOH HOH . K 4 HOH C 39 439 134 HOH HOH . K 4 HOH C 40 440 135 HOH HOH . K 4 HOH C 41 441 136 HOH HOH . K 4 HOH C 42 442 137 HOH HOH . K 4 HOH C 43 443 139 HOH HOH . K 4 HOH C 44 444 141 HOH HOH . K 4 HOH C 45 445 142 HOH HOH . K 4 HOH C 46 446 144 HOH HOH . K 4 HOH C 47 447 145 HOH HOH . K 4 HOH C 48 448 146 HOH HOH . K 4 HOH C 49 449 147 HOH HOH . K 4 HOH C 50 450 148 HOH HOH . K 4 HOH C 51 451 149 HOH HOH . K 4 HOH C 52 452 150 HOH HOH . K 4 HOH C 53 453 151 HOH HOH . K 4 HOH C 54 454 152 HOH HOH . K 4 HOH C 55 455 153 HOH HOH . K 4 HOH C 56 456 154 HOH HOH . K 4 HOH C 57 457 155 HOH HOH . K 4 HOH C 58 458 156 HOH HOH . K 4 HOH C 59 459 157 HOH HOH . K 4 HOH C 60 460 158 HOH HOH . K 4 HOH C 61 461 159 HOH HOH . K 4 HOH C 62 462 160 HOH HOH . K 4 HOH C 63 463 161 HOH HOH . K 4 HOH C 64 464 162 HOH HOH . K 4 HOH C 65 465 163 HOH HOH . K 4 HOH C 66 466 164 HOH HOH . K 4 HOH C 67 467 165 HOH HOH . K 4 HOH C 68 468 166 HOH HOH . K 4 HOH C 69 469 167 HOH HOH . K 4 HOH C 70 470 168 HOH HOH . K 4 HOH C 71 471 169 HOH HOH . K 4 HOH C 72 472 170 HOH HOH . K 4 HOH C 73 473 171 HOH HOH . K 4 HOH C 74 474 172 HOH HOH . K 4 HOH C 75 475 173 HOH HOH . K 4 HOH C 76 476 174 HOH HOH . K 4 HOH C 77 477 175 HOH HOH . K 4 HOH C 78 478 177 HOH HOH . K 4 HOH C 79 479 186 HOH HOH . K 4 HOH C 80 480 187 HOH HOH . K 4 HOH C 81 481 188 HOH HOH . K 4 HOH C 82 482 189 HOH HOH . K 4 HOH C 83 483 190 HOH HOH . K 4 HOH C 84 484 191 HOH HOH . K 4 HOH C 85 485 192 HOH HOH . K 4 HOH C 86 486 193 HOH HOH . K 4 HOH C 87 487 194 HOH HOH . K 4 HOH C 88 488 195 HOH HOH . K 4 HOH C 89 489 196 HOH HOH . K 4 HOH C 90 490 198 HOH HOH . K 4 HOH C 91 491 199 HOH HOH . K 4 HOH C 92 492 200 HOH HOH . K 4 HOH C 93 493 207 HOH HOH . K 4 HOH C 94 494 229 HOH HOH . K 4 HOH C 95 495 230 HOH HOH . K 4 HOH C 96 496 231 HOH HOH . K 4 HOH C 97 497 235 HOH HOH . K 4 HOH C 98 498 236 HOH HOH . K 4 HOH C 99 499 237 HOH HOH . K 4 HOH C 100 500 238 HOH HOH . K 4 HOH C 101 501 240 HOH HOH . K 4 HOH C 102 502 241 HOH HOH . K 4 HOH C 103 503 242 HOH HOH . K 4 HOH C 104 504 244 HOH HOH . K 4 HOH C 105 505 245 HOH HOH . K 4 HOH C 106 506 246 HOH HOH . K 4 HOH C 107 507 247 HOH HOH . K 4 HOH C 108 508 248 HOH HOH . K 4 HOH C 109 509 252 HOH HOH . K 4 HOH C 110 510 253 HOH HOH . K 4 HOH C 111 511 254 HOH HOH . K 4 HOH C 112 512 256 HOH HOH . K 4 HOH C 113 513 257 HOH HOH . K 4 HOH C 114 514 258 HOH HOH . K 4 HOH C 115 515 259 HOH HOH . K 4 HOH C 116 516 260 HOH HOH . K 4 HOH C 117 517 261 HOH HOH . K 4 HOH C 118 518 273 HOH HOH . K 4 HOH C 119 519 274 HOH HOH . K 4 HOH C 120 520 276 HOH HOH . K 4 HOH C 121 521 277 HOH HOH . K 4 HOH C 122 522 278 HOH HOH . K 4 HOH C 123 523 286 HOH HOH . K 4 HOH C 124 524 287 HOH HOH . K 4 HOH C 125 525 288 HOH HOH . K 4 HOH C 126 526 291 HOH HOH . K 4 HOH C 127 527 311 HOH HOH . K 4 HOH C 128 528 312 HOH HOH . K 4 HOH C 129 529 313 HOH HOH . K 4 HOH C 130 530 316 HOH HOH . K 4 HOH C 131 531 317 HOH HOH . L 4 HOH D 1 101 202 HOH HOH . L 4 HOH D 2 102 102 HOH HOH . L 4 HOH D 3 103 103 HOH HOH . L 4 HOH D 4 104 112 HOH HOH . L 4 HOH D 5 105 138 HOH HOH . L 4 HOH D 6 106 140 HOH HOH . L 4 HOH D 7 107 143 HOH HOH . L 4 HOH D 8 108 197 HOH HOH . L 4 HOH D 9 109 201 HOH HOH . L 4 HOH D 10 110 203 HOH HOH . L 4 HOH D 11 111 204 HOH HOH . L 4 HOH D 12 112 205 HOH HOH . L 4 HOH D 13 113 206 HOH HOH . L 4 HOH D 14 114 239 HOH HOH . L 4 HOH D 15 115 243 HOH HOH . L 4 HOH D 16 116 249 HOH HOH . L 4 HOH D 17 117 250 HOH HOH . L 4 HOH D 18 118 251 HOH HOH . L 4 HOH D 19 119 269 HOH HOH . L 4 HOH D 20 120 270 HOH HOH . L 4 HOH D 21 121 271 HOH HOH . L 4 HOH D 22 122 272 HOH HOH . L 4 HOH D 23 123 310 HOH HOH . L 4 HOH D 24 124 318 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 3 -24.056 43.523 26.792 1 30.01 ? C1 EDO 301 C 1 HETATM 2 O O1 EDO . . . G 3 -24.241 43.611 28.157 1 29.62 ? O1 EDO 301 C 1 HETATM 3 C C2 EDO . . . G 3 -23.897 42.012 26.566 1 30.14 ? C2 EDO 301 C 1 HETATM 4 O O2 EDO . . . G 3 -25.177 41.417 26.297 1 25.03 ? O2 EDO 301 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #