data_4F8H # _model_server_result.job_id nVWLQSlXqCbS67LHtGeiwQ _model_server_result.datetime_utc '2024-11-04 22:41:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":402}' # _entry.id 4F8H # _exptl.entry_id 4F8H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.669 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tetradecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.61 _cell.angle_gamma 90 _cell.entry_id 4F8H _cell.length_a 184.069 _cell.length_b 132.742 _cell.length_c 162.077 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 K N N ? 3 O N N ? 3 R N N ? 3 T N N ? 3 X N N # _chem_comp.formula 'C26 H50 O11' _chem_comp.formula_weight 538.669 _chem_comp.id LMD _chem_comp.mon_nstd_flag . _chem_comp.name 'tetradecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms n-Tetradecyl-b-D-maltopyranosid # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C4 LMD sing 194 n n O6 C6 LMD sing 195 n n C5 C6 LMD sing 196 n n C5 C4 LMD sing 197 n n C5 O5 LMD sing 198 n n C4 C3 LMD sing 199 n n C3 O3 LMD sing 200 n n C3 C2 LMD sing 201 n n O5 C1 LMD sing 202 n n O2 C2 LMD sing 203 n n C2 C1 LMD sing 204 n n C1 O1 LMD sing 205 n n O1 CAP LMD sing 206 n n OAU CAO LMD sing 207 n n CAP CAO LMD sing 208 n n CAP CAQ LMD sing 209 n n CAR CAQ LMD sing 210 n n CAR OAW LMD sing 211 n n CAO CAN LMD sing 212 n n CAQ OAV LMD sing 213 n n CAN OAT LMD sing 214 n n CAN CAM LMD sing 215 n n OAV CAM LMD sing 216 n n CAM OAS LMD sing 217 n n OAS CAX LMD sing 218 n n CAX CAY LMD sing 219 n n CAY CAZ LMD sing 220 n n CAZ CBA LMD sing 221 n n CBA CBB LMD sing 222 n n CBB CBC LMD sing 223 n n CBC CBD LMD sing 224 n n CBD CBE LMD sing 225 n n CBE CBF LMD sing 226 n n CBF CBG LMD sing 227 n n CBG CBH LMD sing 228 n n CBH CBI LMD sing 229 n n CBI CBJ LMD sing 230 n n CBJ CBK LMD sing 231 n n CBK H1 LMD sing 232 n n CBK H2 LMD sing 233 n n CBK H3 LMD sing 234 n n CBJ H4 LMD sing 235 n n CBJ H5 LMD sing 236 n n CBI H6 LMD sing 237 n n CBI H7 LMD sing 238 n n CBH H8 LMD sing 239 n n CBH H9 LMD sing 240 n n CBG H10 LMD sing 241 n n CBG H11 LMD sing 242 n n CBF H12 LMD sing 243 n n CBF H13 LMD sing 244 n n CBE H14 LMD sing 245 n n CBE H15 LMD sing 246 n n CBD H16 LMD sing 247 n n CBD H17 LMD sing 248 n n CBC H18 LMD sing 249 n n CBC H19 LMD sing 250 n n CBB H20 LMD sing 251 n n CBB H21 LMD sing 252 n n CBA H22 LMD sing 253 n n CBA H23 LMD sing 254 n n CAZ H24 LMD sing 255 n n CAZ H25 LMD sing 256 n n CAY H26 LMD sing 257 n n CAY H27 LMD sing 258 n n CAX H28 LMD sing 259 n n CAX H29 LMD sing 260 n n CAM H30 LMD sing 261 n n CAN H31 LMD sing 262 n n OAT H32 LMD sing 263 n n CAO H33 LMD sing 264 n n OAU H34 LMD sing 265 n n CAQ H35 LMD sing 266 n n CAR H36 LMD sing 267 n n CAR H37 LMD sing 268 n n OAW H38 LMD sing 269 n n CAP H39 LMD sing 270 n n C1 H40 LMD sing 271 n n C5 H41 LMD sing 272 n n C6 H42 LMD sing 273 n n C6 H43 LMD sing 274 n n O6 H44 LMD sing 275 n n C4 H45 LMD sing 276 n n O4 H46 LMD sing 277 n n C3 H47 LMD sing 278 n n O3 H48 LMD sing 279 n n C2 H49 LMD sing 280 n n O2 H50 LMD sing 281 n n # _atom_sites.entry_id 4F8H _atom_sites.fract_transf_matrix[1][1] 0.005433 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001315 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 RKE A 1 401 401 RKE KTM . G 3 LMD A 1 402 501 LMD LMD . H 4 PC1 A 1 403 601 PC1 PC1 . I 4 PC1 A 1 404 602 PC1 PC1 . J 2 RKE B 1 401 401 RKE KTM . K 3 LMD B 1 402 501 LMD LMD . L 4 PC1 B 1 403 601 PC1 PC1 . M 4 PC1 B 1 404 602 PC1 PC1 . N 2 RKE C 1 401 401 RKE KTM . O 3 LMD C 1 402 501 LMD LMD . P 4 PC1 C 1 403 601 PC1 PC1 . Q 4 PC1 C 1 404 602 PC1 PC1 . R 3 LMD C 1 405 502 LMD LMD . S 2 RKE D 1 401 401 RKE KTM . T 3 LMD D 1 402 501 LMD LMD . U 4 PC1 D 1 403 601 PC1 PC1 . V 4 PC1 D 1 404 602 PC1 PC1 . W 2 RKE E 1 401 401 RKE KTM . X 3 LMD E 1 402 501 LMD LMD . Y 4 PC1 E 1 403 601 PC1 PC1 . Z 4 PC1 E 1 404 602 PC1 PC1 . AA 5 HOH A 1 501 2 HOH HOH . AA 5 HOH A 2 502 13 HOH HOH . AA 5 HOH A 3 503 14 HOH HOH . AA 5 HOH A 4 504 20 HOH HOH . AA 5 HOH A 5 505 35 HOH HOH . AA 5 HOH A 6 506 40 HOH HOH . AA 5 HOH A 7 507 41 HOH HOH . AA 5 HOH A 8 508 45 HOH HOH . AA 5 HOH A 9 509 48 HOH HOH . AA 5 HOH A 10 510 54 HOH HOH . BA 5 HOH B 1 501 9 HOH HOH . BA 5 HOH B 2 502 17 HOH HOH . BA 5 HOH B 3 503 22 HOH HOH . BA 5 HOH B 4 504 27 HOH HOH . BA 5 HOH B 5 505 29 HOH HOH . BA 5 HOH B 6 506 32 HOH HOH . BA 5 HOH B 7 507 36 HOH HOH . BA 5 HOH B 8 508 37 HOH HOH . BA 5 HOH B 9 509 47 HOH HOH . BA 5 HOH B 10 510 52 HOH HOH . BA 5 HOH B 11 511 55 HOH HOH . BA 5 HOH B 12 512 57 HOH HOH . BA 5 HOH B 13 513 58 HOH HOH . CA 5 HOH C 1 501 1 HOH HOH . CA 5 HOH C 2 502 4 HOH HOH . CA 5 HOH C 3 503 5 HOH HOH . CA 5 HOH C 4 504 10 HOH HOH . CA 5 HOH C 5 505 11 HOH HOH . CA 5 HOH C 6 506 16 HOH HOH . CA 5 HOH C 7 507 28 HOH HOH . CA 5 HOH C 8 508 31 HOH HOH . CA 5 HOH C 9 509 38 HOH HOH . CA 5 HOH C 10 510 39 HOH HOH . CA 5 HOH C 11 511 46 HOH HOH . CA 5 HOH C 12 512 50 HOH HOH . CA 5 HOH C 13 513 56 HOH HOH . DA 5 HOH D 1 501 3 HOH HOH . DA 5 HOH D 2 502 8 HOH HOH . DA 5 HOH D 3 503 12 HOH HOH . DA 5 HOH D 4 504 21 HOH HOH . DA 5 HOH D 5 505 23 HOH HOH . DA 5 HOH D 6 506 26 HOH HOH . DA 5 HOH D 7 507 43 HOH HOH . DA 5 HOH D 8 508 44 HOH HOH . DA 5 HOH D 9 509 49 HOH HOH . DA 5 HOH D 10 510 51 HOH HOH . EA 5 HOH E 1 501 6 HOH HOH . EA 5 HOH E 2 502 7 HOH HOH . EA 5 HOH E 3 503 15 HOH HOH . EA 5 HOH E 4 504 18 HOH HOH . EA 5 HOH E 5 505 19 HOH HOH . EA 5 HOH E 6 506 24 HOH HOH . EA 5 HOH E 7 507 25 HOH HOH . EA 5 HOH E 8 508 30 HOH HOH . EA 5 HOH E 9 509 33 HOH HOH . EA 5 HOH E 10 510 34 HOH HOH . EA 5 HOH E 11 511 42 HOH HOH . EA 5 HOH E 12 512 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBK LMD . . . X 3 61.465 -29.005 47.516 1 110.53 ? CBK LMD 402 E 1 HETATM 2 C CBJ LMD . . . X 3 61.231 -29.212 46.008 1 96.59 ? CBJ LMD 402 E 1 HETATM 3 C CBI LMD . . . X 3 62.26 -28.374 45.228 1 73.96 ? CBI LMD 402 E 1 HETATM 4 C CBH LMD . . . X 3 61.523 -27.719 44.046 1 51.28 ? CBH LMD 402 E 1 HETATM 5 C CBG LMD . . . X 3 60.009 -27.582 44.337 1 61.63 ? CBG LMD 402 E 1 HETATM 6 C CBF LMD . . . X 3 59.19 -27.453 43.025 1 63.91 ? CBF LMD 402 E 1 HETATM 7 C CBE LMD . . . X 3 59.659 -26.245 42.18 1 56.99 ? CBE LMD 402 E 1 HETATM 8 C CBD LMD . . . X 3 59.086 -26.242 40.745 1 63.93 ? CBD LMD 402 E 1 HETATM 9 C CBC LMD . . . X 3 57.649 -25.672 40.63 1 48.68 ? CBC LMD 402 E 1 HETATM 10 C CBB LMD . . . X 3 57.458 -25.069 39.216 1 45.24 ? CBB LMD 402 E 1 HETATM 11 C CBA LMD . . . X 3 55.976 -24.889 38.816 1 63.43 ? CBA LMD 402 E 1 HETATM 12 C CAZ LMD . . . X 3 55.837 -24.452 37.336 1 46.51 ? CAZ LMD 402 E 1 HETATM 13 C CAY LMD . . . X 3 54.733 -23.372 37.168 1 123.13 ? CAY LMD 402 E 1 HETATM 14 C CAX LMD . . . X 3 53.753 -23.672 36.008 1 127.15 ? CAX LMD 402 E 1 HETATM 15 O OAS LMD . . . X 3 54.495 -23.762 34.773 1 122.44 ? OAS LMD 402 E 1 HETATM 16 C CAM LMD . . . X 3 54.288 -22.695 33.814 1 166.71 ? CAM LMD 402 E 1 HETATM 17 C CAN LMD . . . X 3 54.872 -22.956 32.391 1 157.09 ? CAN LMD 402 E 1 HETATM 18 O OAT LMD . . . X 3 56.285 -23.11 32.368 1 174.77 ? OAT LMD 402 E 1 HETATM 19 C CAO LMD . . . X 3 54.552 -21.82 31.409 1 174.03 ? CAO LMD 402 E 1 HETATM 20 O OAU LMD . . . X 3 55.072 -22.19 30.14 1 159.62 ? OAU LMD 402 E 1 HETATM 21 O OAV LMD . . . X 3 52.959 -22.088 33.787 1 188.29 ? OAV LMD 402 E 1 HETATM 22 C CAQ LMD . . . X 3 52.65 -21.077 32.782 1 167.05 ? CAQ LMD 402 E 1 HETATM 23 C CAR LMD . . . X 3 51.165 -20.637 32.941 1 150.75 ? CAR LMD 402 E 1 HETATM 24 O OAW LMD . . . X 3 50.263 -21.733 32.814 1 132.07 ? OAW LMD 402 E 1 HETATM 25 C CAP LMD . . . X 3 53.015 -21.668 31.391 1 211.25 ? CAP LMD 402 E 1 HETATM 26 O O1 LMD . . . X 3 52.511 -20.906 30.268 1 222.53 ? O1 LMD 402 E 1 HETATM 27 C C1 LMD . . . X 3 52.604 -21.631 29.019 1 203.39 ? C1 LMD 402 E 1 HETATM 28 O O5 LMD . . . X 3 51.579 -22.641 28.848 1 167.82 ? O5 LMD 402 E 1 HETATM 29 C C5 LMD . . . X 3 52.033 -23.715 27.977 1 160.81 ? C5 LMD 402 E 1 HETATM 30 C C6 LMD . . . X 3 52.506 -24.863 28.909 1 172.14 ? C6 LMD 402 E 1 HETATM 31 O O6 LMD . . . X 3 52.473 -26.131 28.261 1 114.99 ? O6 LMD 402 E 1 HETATM 32 C C4 LMD . . . X 3 53.135 -23.176 26.999 1 168.09 ? C4 LMD 402 E 1 HETATM 33 O O4 LMD . . . X 3 53.311 -23.977 25.832 1 98.98 ? O4 LMD 402 E 1 HETATM 34 C C3 LMD . . . X 3 52.828 -21.712 26.539 1 168.18 ? C3 LMD 402 E 1 HETATM 35 O O3 LMD . . . X 3 53.826 -21.245 25.639 1 100.71 ? O3 LMD 402 E 1 HETATM 36 C C2 LMD . . . X 3 52.738 -20.753 27.751 1 146.86 ? C2 LMD 402 E 1 HETATM 37 O O2 LMD . . . X 3 51.676 -19.814 27.594 1 129.44 ? O2 LMD 402 E 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #