data_4F8H
#
_model_server_result.job_id            Ms8_WQt_10UWTMdVMlpGIA 
_model_server_result.datetime_utc      '2025-02-26 21:57:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4f8h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":404}' 
#
_entry.id    4F8H 
#
_exptl.entry_id    4F8H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.61 
_cell.angle_gamma         90 
_cell.entry_id            4F8H 
_cell.length_a            184.069 
_cell.length_b            132.742 
_cell.length_c            162.077 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4F8H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 I N N 
? 4 L N N 
? 4 M N N 
? 4 P N N 
? 4 Q N N 
? 4 U N N 
? 4 V N N 
? 4 Y N N 
? 4 Z N N 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 325 n n 
P O14 PC1 doub 326 n n 
P O13 PC1 sing 327 n n 
P O11 PC1 sing 328 n n 
O13 C11 PC1 sing 329 n n 
C11 C12 PC1 sing 330 n n 
C11 H111 PC1 sing 331 n n 
C11 H112 PC1 sing 332 n n 
C12 N PC1 sing 333 n n 
C12 H121 PC1 sing 334 n n 
C12 H122 PC1 sing 335 n n 
N C13 PC1 sing 336 n n 
N C14 PC1 sing 337 n n 
N C15 PC1 sing 338 n n 
C13 H131 PC1 sing 339 n n 
C13 H132 PC1 sing 340 n n 
C13 H133 PC1 sing 341 n n 
C14 H141 PC1 sing 342 n n 
C14 H142 PC1 sing 343 n n 
C14 H143 PC1 sing 344 n n 
C15 H151 PC1 sing 345 n n 
C15 H152 PC1 sing 346 n n 
C15 H153 PC1 sing 347 n n 
O11 C1 PC1 sing 348 n n 
C1 C2 PC1 sing 349 n n 
C1 H11 PC1 sing 350 n n 
C1 H12 PC1 sing 351 n n 
C2 O21 PC1 sing 352 n n 
C2 C3 PC1 sing 353 n n 
C2 H2 PC1 sing 354 n n 
O21 C21 PC1 sing 355 n n 
C21 O22 PC1 doub 356 n n 
C21 C22 PC1 sing 357 n n 
C22 C23 PC1 sing 358 n n 
C22 H221 PC1 sing 359 n n 
C22 H222 PC1 sing 360 n n 
C23 C24 PC1 sing 361 n n 
C23 H231 PC1 sing 362 n n 
C23 H232 PC1 sing 363 n n 
C24 C25 PC1 sing 364 n n 
C24 H241 PC1 sing 365 n n 
C24 H242 PC1 sing 366 n n 
C25 C26 PC1 sing 367 n n 
C25 H251 PC1 sing 368 n n 
C25 H252 PC1 sing 369 n n 
C26 C27 PC1 sing 370 n n 
C26 H261 PC1 sing 371 n n 
C26 H262 PC1 sing 372 n n 
C27 C28 PC1 sing 373 n n 
C27 H271 PC1 sing 374 n n 
C27 H272 PC1 sing 375 n n 
C28 C29 PC1 sing 376 n n 
C28 H281 PC1 sing 377 n n 
C28 H282 PC1 sing 378 n n 
C29 C2A PC1 sing 379 n n 
C29 H291 PC1 sing 380 n n 
C29 H292 PC1 sing 381 n n 
C2A C2B PC1 sing 382 n n 
C2A H2A1 PC1 sing 383 n n 
C2A H2A2 PC1 sing 384 n n 
C2B C2C PC1 sing 385 n n 
C2B H2B1 PC1 sing 386 n n 
C2B H2B2 PC1 sing 387 n n 
C2C C2D PC1 sing 388 n n 
C2C H2C1 PC1 sing 389 n n 
C2C H2C2 PC1 sing 390 n n 
C2D C2E PC1 sing 391 n n 
C2D H2D1 PC1 sing 392 n n 
C2D H2D2 PC1 sing 393 n n 
C2E C2F PC1 sing 394 n n 
C2E H2E1 PC1 sing 395 n n 
C2E H2E2 PC1 sing 396 n n 
C2F C2G PC1 sing 397 n n 
C2F H2F1 PC1 sing 398 n n 
C2F H2F2 PC1 sing 399 n n 
C2G C2H PC1 sing 400 n n 
C2G H2G1 PC1 sing 401 n n 
C2G H2G2 PC1 sing 402 n n 
C2H C2I PC1 sing 403 n n 
C2H H2H1 PC1 sing 404 n n 
C2H H2H2 PC1 sing 405 n n 
C2I H2I1 PC1 sing 406 n n 
C2I H2I2 PC1 sing 407 n n 
C2I H2I3 PC1 sing 408 n n 
C3 O31 PC1 sing 409 n n 
C3 H31 PC1 sing 410 n n 
C3 H32 PC1 sing 411 n n 
O31 C31 PC1 sing 412 n n 
C31 O32 PC1 doub 413 n n 
C31 C32 PC1 sing 414 n n 
C32 C33 PC1 sing 415 n n 
C32 H321 PC1 sing 416 n n 
C32 H322 PC1 sing 417 n n 
C33 C34 PC1 sing 418 n n 
C33 H331 PC1 sing 419 n n 
C33 H332 PC1 sing 420 n n 
C34 C35 PC1 sing 421 n n 
C34 H341 PC1 sing 422 n n 
C34 H342 PC1 sing 423 n n 
C35 C36 PC1 sing 424 n n 
C35 H351 PC1 sing 425 n n 
C35 H352 PC1 sing 426 n n 
C36 C37 PC1 sing 427 n n 
C36 H361 PC1 sing 428 n n 
C36 H362 PC1 sing 429 n n 
C37 C38 PC1 sing 430 n n 
C37 H371 PC1 sing 431 n n 
C37 H372 PC1 sing 432 n n 
C38 C39 PC1 sing 433 n n 
C38 H381 PC1 sing 434 n n 
C38 H382 PC1 sing 435 n n 
C39 C3A PC1 sing 436 n n 
C39 H391 PC1 sing 437 n n 
C39 H392 PC1 sing 438 n n 
C3A C3B PC1 sing 439 n n 
C3A H3A1 PC1 sing 440 n n 
C3A H3A2 PC1 sing 441 n n 
C3B C3C PC1 sing 442 n n 
C3B H3B1 PC1 sing 443 n n 
C3B H3B2 PC1 sing 444 n n 
C3C C3D PC1 sing 445 n n 
C3C H3C1 PC1 sing 446 n n 
C3C H3C2 PC1 sing 447 n n 
C3D C3E PC1 sing 448 n n 
C3D H3D1 PC1 sing 449 n n 
C3D H3D2 PC1 sing 450 n n 
C3E C3F PC1 sing 451 n n 
C3E H3E1 PC1 sing 452 n n 
C3E H3E2 PC1 sing 453 n n 
C3F C3G PC1 sing 454 n n 
C3F H3F1 PC1 sing 455 n n 
C3F H3F2 PC1 sing 456 n n 
C3G C3H PC1 sing 457 n n 
C3G H3G1 PC1 sing 458 n n 
C3G H3G2 PC1 sing 459 n n 
C3H C3I PC1 sing 460 n n 
C3H H3H1 PC1 sing 461 n n 
C3H H3H2 PC1 sing 462 n n 
C3I H3I1 PC1 sing 463 n n 
C3I H3I2 PC1 sing 464 n n 
C3I H3I3 PC1 sing 465 n n 
#
_atom_sites.entry_id                     4F8H 
_atom_sites.fract_transf_matrix[1][1]    0.005433 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001315 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007533 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006348 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 RKE A 1 401 401 RKE KTM . 
G 3 LMD A 1 402 501 LMD LMD . 
H 4 PC1 A 1 403 601 PC1 PC1 . 
I 4 PC1 A 1 404 602 PC1 PC1 . 
J 2 RKE B 1 401 401 RKE KTM . 
K 3 LMD B 1 402 501 LMD LMD . 
L 4 PC1 B 1 403 601 PC1 PC1 . 
M 4 PC1 B 1 404 602 PC1 PC1 . 
N 2 RKE C 1 401 401 RKE KTM . 
O 3 LMD C 1 402 501 LMD LMD . 
P 4 PC1 C 1 403 601 PC1 PC1 . 
Q 4 PC1 C 1 404 602 PC1 PC1 . 
R 3 LMD C 1 405 502 LMD LMD . 
S 2 RKE D 1 401 401 RKE KTM . 
T 3 LMD D 1 402 501 LMD LMD . 
U 4 PC1 D 1 403 601 PC1 PC1 . 
V 4 PC1 D 1 404 602 PC1 PC1 . 
W 2 RKE E 1 401 401 RKE KTM . 
X 3 LMD E 1 402 501 LMD LMD . 
Y 4 PC1 E 1 403 601 PC1 PC1 . 
Z 4 PC1 E 1 404 602 PC1 PC1 . 
AA 5 HOH A 1 501 2 HOH HOH . 
AA 5 HOH A 2 502 13 HOH HOH . 
AA 5 HOH A 3 503 14 HOH HOH . 
AA 5 HOH A 4 504 20 HOH HOH . 
AA 5 HOH A 5 505 35 HOH HOH . 
AA 5 HOH A 6 506 40 HOH HOH . 
AA 5 HOH A 7 507 41 HOH HOH . 
AA 5 HOH A 8 508 45 HOH HOH . 
AA 5 HOH A 9 509 48 HOH HOH . 
AA 5 HOH A 10 510 54 HOH HOH . 
BA 5 HOH B 1 501 9 HOH HOH . 
BA 5 HOH B 2 502 17 HOH HOH . 
BA 5 HOH B 3 503 22 HOH HOH . 
BA 5 HOH B 4 504 27 HOH HOH . 
BA 5 HOH B 5 505 29 HOH HOH . 
BA 5 HOH B 6 506 32 HOH HOH . 
BA 5 HOH B 7 507 36 HOH HOH . 
BA 5 HOH B 8 508 37 HOH HOH . 
BA 5 HOH B 9 509 47 HOH HOH . 
BA 5 HOH B 10 510 52 HOH HOH . 
BA 5 HOH B 11 511 55 HOH HOH . 
BA 5 HOH B 12 512 57 HOH HOH . 
BA 5 HOH B 13 513 58 HOH HOH . 
CA 5 HOH C 1 501 1 HOH HOH . 
CA 5 HOH C 2 502 4 HOH HOH . 
CA 5 HOH C 3 503 5 HOH HOH . 
CA 5 HOH C 4 504 10 HOH HOH . 
CA 5 HOH C 5 505 11 HOH HOH . 
CA 5 HOH C 6 506 16 HOH HOH . 
CA 5 HOH C 7 507 28 HOH HOH . 
CA 5 HOH C 8 508 31 HOH HOH . 
CA 5 HOH C 9 509 38 HOH HOH . 
CA 5 HOH C 10 510 39 HOH HOH . 
CA 5 HOH C 11 511 46 HOH HOH . 
CA 5 HOH C 12 512 50 HOH HOH . 
CA 5 HOH C 13 513 56 HOH HOH . 
DA 5 HOH D 1 501 3 HOH HOH . 
DA 5 HOH D 2 502 8 HOH HOH . 
DA 5 HOH D 3 503 12 HOH HOH . 
DA 5 HOH D 4 504 21 HOH HOH . 
DA 5 HOH D 5 505 23 HOH HOH . 
DA 5 HOH D 6 506 26 HOH HOH . 
DA 5 HOH D 7 507 43 HOH HOH . 
DA 5 HOH D 8 508 44 HOH HOH . 
DA 5 HOH D 9 509 49 HOH HOH . 
DA 5 HOH D 10 510 51 HOH HOH . 
EA 5 HOH E 1 501 6 HOH HOH . 
EA 5 HOH E 2 502 7 HOH HOH . 
EA 5 HOH E 3 503 15 HOH HOH . 
EA 5 HOH E 4 504 18 HOH HOH . 
EA 5 HOH E 5 505 19 HOH HOH . 
EA 5 HOH E 6 506 24 HOH HOH . 
EA 5 HOH E 7 507 25 HOH HOH . 
EA 5 HOH E 8 508 30 HOH HOH . 
EA 5 HOH E 9 509 33 HOH HOH . 
EA 5 HOH E 10 510 34 HOH HOH . 
EA 5 HOH E 11 511 42 HOH HOH . 
EA 5 HOH E 12 512 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . V 4 71.022 -51.412 28.138 1 68.12 ? O12 PC1 404 D 1 
HETATM 2 P P PC1 . . . V 4 71.011 -52.893 28.524 1 258.08 ? P PC1 404 D 1 
HETATM 3 O O14 PC1 . . . V 4 71.655 -53.143 29.876 1 56.13 ? O14 PC1 404 D 1 
HETATM 4 O O13 PC1 . . . V 4 71.867 -53.762 27.53 1 133.34 ? O13 PC1 404 D 1 
HETATM 5 C C11 PC1 . . . V 4 71.485 -53.654 26.212 1 132.45 ? C11 PC1 404 D 1 
HETATM 6 C C12 PC1 . . . V 4 72.12 -52.467 25.561 1 143.62 ? C12 PC1 404 D 1 
HETATM 7 N N PC1 . . . V 4 72.278 -52.716 24.157 1 157.65 ? N PC1 404 D 1 
HETATM 8 C C13 PC1 . . . V 4 72.415 -51.469 23.448 1 80.18 ? C13 PC1 404 D 1 
HETATM 9 C C14 PC1 . . . V 4 71.109 -53.383 23.665 1 100.53 ? C14 PC1 404 D 1 
HETATM 10 C C15 PC1 . . . V 4 73.425 -53.564 23.973 1 75.85 ? C15 PC1 404 D 1 
HETATM 11 O O11 PC1 . . . V 4 69.55 -53.46 28.692 1 228.59 ? O11 PC1 404 D 1 
HETATM 12 C C1 PC1 . . . V 4 69.51 -54.403 29.711 1 176.28 ? C1 PC1 404 D 1 
HETATM 13 C C2 PC1 . . . V 4 68.412 -54.249 30.742 1 191.45 ? C2 PC1 404 D 1 
HETATM 14 O O21 PC1 . . . V 4 67.554 -53.18 30.521 1 193.49 ? O21 PC1 404 D 1 
HETATM 15 C C21 PC1 . . . V 4 66.349 -53.363 31.184 1 146.38 ? C21 PC1 404 D 1 
HETATM 16 O O22 PC1 . . . V 4 65.438 -53.993 30.663 1 76.34 ? O22 PC1 404 D 1 
HETATM 17 C C22 PC1 . . . V 4 66.09 -52.708 32.502 1 119.22 ? C22 PC1 404 D 1 
HETATM 18 C C23 PC1 . . . V 4 65.513 -53.705 33.458 1 135.99 ? C23 PC1 404 D 1 
HETATM 19 C C24 PC1 . . . V 4 66.606 -54.396 34.215 1 107.85 ? C24 PC1 404 D 1 
HETATM 20 C C25 PC1 . . . V 4 66.066 -55.076 35.433 1 99.34 ? C25 PC1 404 D 1 
HETATM 21 C C26 PC1 . . . V 4 66.495 -54.374 36.688 1 112.51 ? C26 PC1 404 D 1 
HETATM 22 C C27 PC1 . . . V 4 65.437 -53.414 37.147 1 161.58 ? C27 PC1 404 D 1 
HETATM 23 C C28 PC1 . . . V 4 64.954 -53.747 38.525 1 107.45 ? C28 PC1 404 D 1 
HETATM 24 C C29 PC1 . . . V 4 63.895 -52.793 38.98 1 54.28 ? C29 PC1 404 D 1 
HETATM 25 C C2A PC1 . . . V 4 64.435 -51.93 40.086 1 98.36 ? C2A PC1 404 D 1 
HETATM 26 C C2B PC1 . . . V 4 65.474 -50.961 39.608 1 61.52 ? C2B PC1 404 D 1 
HETATM 27 C C3 PC1 . . . V 4 69.021 -54.217 32.123 1 157.71 ? C3 PC1 404 D 1 
HETATM 28 O O31 PC1 . . . V 4 69.014 -52.973 32.742 1 186.53 ? O31 PC1 404 D 1 
HETATM 29 C C31 PC1 . . . V 4 70.292 -52.562 33.103 1 131.38 ? C31 PC1 404 D 1 
HETATM 30 O O32 PC1 . . . V 4 71.176 -52.574 32.255 1 67.73 ? O32 PC1 404 D 1 
HETATM 31 C C32 PC1 . . . V 4 70.665 -52.108 34.488 1 66.33 ? C32 PC1 404 D 1 
HETATM 32 C C33 PC1 . . . V 4 69.515 -51.645 35.322 1 96.36 ? C33 PC1 404 D 1 
HETATM 33 C C34 PC1 . . . V 4 69.975 -51.499 36.738 1 62.53 ? C34 PC1 404 D 1 
HETATM 34 C C35 PC1 . . . V 4 69.383 -50.261 37.322 1 89.62 ? C35 PC1 404 D 1 
HETATM 35 C C36 PC1 . . . V 4 69.22 -50.433 38.793 1 87.49 ? C36 PC1 404 D 1 
HETATM 36 C C37 PC1 . . . V 4 70.054 -49.411 39.494 1 93.47 ? C37 PC1 404 D 1 
HETATM 37 C C38 PC1 . . . V 4 70.535 -49.93 40.814 1 93.11 ? C38 PC1 404 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           37 
#