data_4F8O # _model_server_result.job_id w8d0172SViAPDg6wl9D0cA _model_server_result.datetime_utc '2024-10-19 04:36:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4F8O # _exptl.entry_id 4F8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.07 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F8O _cell.length_a 26.264 _cell.length_b 55.694 _cell.length_c 103.818 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC E 1 LAT 2 n B GAL 2 B 2 GAL E 1 LAT # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OH TYR 52 A TYR 52 1_555 F S AES . A AES 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.548 ? covale ? covale2 B O4 BGC . B BGC 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 sing # _chem_comp.formula 'C H5 N3' _chem_comp.formula_weight 59.07 _chem_comp.id GAI _chem_comp.mon_nstd_flag . _chem_comp.name GUANIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N1 GAI doub 117 n n C N2 GAI sing 118 n n C N3 GAI sing 119 n n N1 HN1 GAI sing 120 n n N2 HN21 GAI sing 121 n n N2 HN22 GAI sing 122 n n N3 HN31 GAI sing 123 n n N3 HN32 GAI sing 124 n n # _atom_sites.entry_id 4F8O _atom_sites.fract_transf_matrix[1][1] 0.038075 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009632 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GAI A 1 202 1 GAI GAI . D 3 GAI A 1 203 1 GAI GAI . E 4 CL A 1 204 1 CL CL . F 5 AES A 1 205 1 AES 2AB . G 6 HOH A 1 301 1 HOH HOH . G 6 HOH A 2 302 3 HOH HOH . G 6 HOH A 3 303 4 HOH HOH . G 6 HOH A 4 304 5 HOH HOH . G 6 HOH A 5 305 6 HOH HOH . G 6 HOH A 6 306 7 HOH HOH . G 6 HOH A 7 307 8 HOH HOH . G 6 HOH A 8 308 9 HOH HOH . G 6 HOH A 9 309 10 HOH HOH . G 6 HOH A 10 310 11 HOH HOH . G 6 HOH A 11 311 12 HOH HOH . G 6 HOH A 12 312 13 HOH HOH . G 6 HOH A 13 313 14 HOH HOH . G 6 HOH A 14 314 15 HOH HOH . G 6 HOH A 15 315 16 HOH HOH . G 6 HOH A 16 316 17 HOH HOH . G 6 HOH A 17 317 18 HOH HOH . G 6 HOH A 18 318 19 HOH HOH . G 6 HOH A 19 319 20 HOH HOH . G 6 HOH A 20 320 21 HOH HOH . G 6 HOH A 21 321 22 HOH HOH . G 6 HOH A 22 322 23 HOH HOH . G 6 HOH A 23 323 24 HOH HOH . G 6 HOH A 24 324 27 HOH HOH . G 6 HOH A 25 325 29 HOH HOH . G 6 HOH A 26 326 30 HOH HOH . G 6 HOH A 27 327 31 HOH HOH . G 6 HOH A 28 328 32 HOH HOH . G 6 HOH A 29 329 33 HOH HOH . G 6 HOH A 30 330 34 HOH HOH . G 6 HOH A 31 331 35 HOH HOH . G 6 HOH A 32 332 36 HOH HOH . G 6 HOH A 33 333 37 HOH HOH . G 6 HOH A 34 334 38 HOH HOH . G 6 HOH A 35 335 39 HOH HOH . G 6 HOH A 36 336 40 HOH HOH . G 6 HOH A 37 337 41 HOH HOH . G 6 HOH A 38 338 42 HOH HOH . G 6 HOH A 39 339 43 HOH HOH . G 6 HOH A 40 340 44 HOH HOH . G 6 HOH A 41 341 45 HOH HOH . G 6 HOH A 42 342 46 HOH HOH . G 6 HOH A 43 343 47 HOH HOH . G 6 HOH A 44 344 48 HOH HOH . G 6 HOH A 45 345 49 HOH HOH . G 6 HOH A 46 346 50 HOH HOH . G 6 HOH A 47 347 51 HOH HOH . G 6 HOH A 48 348 52 HOH HOH . G 6 HOH A 49 349 53 HOH HOH . G 6 HOH A 50 350 54 HOH HOH . G 6 HOH A 51 351 55 HOH HOH . G 6 HOH A 52 352 56 HOH HOH . G 6 HOH A 53 353 58 HOH HOH . G 6 HOH A 54 354 59 HOH HOH . G 6 HOH A 55 355 60 HOH HOH . G 6 HOH A 56 356 61 HOH HOH . G 6 HOH A 57 357 62 HOH HOH . G 6 HOH A 58 358 63 HOH HOH . G 6 HOH A 59 359 64 HOH HOH . G 6 HOH A 60 360 65 HOH HOH . G 6 HOH A 61 361 66 HOH HOH . G 6 HOH A 62 362 67 HOH HOH . G 6 HOH A 63 363 68 HOH HOH . G 6 HOH A 64 364 69 HOH HOH . G 6 HOH A 65 365 70 HOH HOH . G 6 HOH A 66 366 71 HOH HOH . G 6 HOH A 67 367 72 HOH HOH . G 6 HOH A 68 368 73 HOH HOH . G 6 HOH A 69 369 74 HOH HOH . G 6 HOH A 70 370 75 HOH HOH . G 6 HOH A 71 371 76 HOH HOH . G 6 HOH A 72 372 77 HOH HOH . G 6 HOH A 73 373 78 HOH HOH . G 6 HOH A 74 374 79 HOH HOH . G 6 HOH A 75 375 80 HOH HOH . G 6 HOH A 76 376 81 HOH HOH . G 6 HOH A 77 377 82 HOH HOH . G 6 HOH A 78 378 83 HOH HOH . G 6 HOH A 79 379 84 HOH HOH . G 6 HOH A 80 380 85 HOH HOH . G 6 HOH A 81 381 86 HOH HOH . G 6 HOH A 82 382 87 HOH HOH . G 6 HOH A 83 383 88 HOH HOH . G 6 HOH A 84 384 89 HOH HOH . G 6 HOH A 85 385 90 HOH HOH . G 6 HOH A 86 386 91 HOH HOH . G 6 HOH A 87 387 92 HOH HOH . G 6 HOH A 88 388 93 HOH HOH . G 6 HOH A 89 389 94 HOH HOH . G 6 HOH A 90 390 95 HOH HOH . G 6 HOH A 91 391 96 HOH HOH . G 6 HOH A 92 392 97 HOH HOH . G 6 HOH A 93 393 98 HOH HOH . G 6 HOH A 94 394 99 HOH HOH . G 6 HOH A 95 395 100 HOH HOH . G 6 HOH A 96 396 101 HOH HOH . G 6 HOH A 97 397 102 HOH HOH . G 6 HOH A 98 398 103 HOH HOH . G 6 HOH A 99 399 104 HOH HOH . G 6 HOH A 100 400 105 HOH HOH . G 6 HOH A 101 401 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C GAI . . . D 3 25.816 -3.529 26.884 0.58 17.85 ? C GAI 203 A 1 HETATM 2 N N1 GAI . . . D 3 24.762 -4.198 26.738 0.58 17.99 ? N1 GAI 203 A 1 HETATM 3 N N2 GAI . . . D 3 25.747 -2.178 26.86 0.58 16.14 ? N2 GAI 203 A 1 HETATM 4 N N3 GAI . . . D 3 26.999 -4.215 26.928 0.58 20.2 ? N3 GAI 203 A 1 HETATM 5 H HN1 GAI . . . D 3 23.918 -3.755 26.691 0.58 21.52 ? HN1 GAI 203 A 1 HETATM 6 H HN21 GAI . . . D 3 24.849 -1.72 26.796 0.58 19.31 ? HN21 GAI 203 A 1 HETATM 7 H HN22 GAI . . . D 3 26.59 -1.628 26.939 0.58 19.31 ? HN22 GAI 203 A 1 HETATM 8 H HN31 GAI . . . D 3 27.871 -3.712 27.008 0.58 24.18 ? HN31 GAI 203 A 1 HETATM 9 H HN32 GAI . . . D 3 26.998 -5.225 26.913 0.58 24.18 ? HN32 GAI 203 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #