data_4F93
#
_model_server_result.job_id            Ujpw5zJuDOUHhk76cgWu2w 
_model_server_result.datetime_utc      '2024-11-16 22:40:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4f93 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":3002}' 
#
_entry.id    4F93 
#
_exptl.entry_id    4F93 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          120.62 
_cell.angle_gamma         90 
_cell.entry_id            4F93 
_cell.length_a            147.12 
_cell.length_b            154.586 
_cell.length_c            143.28 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4F93 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 1053 B ASP 1454 1_555 D MG MG . B MG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? 
metalc ? metalc2 C O1G ATP . B ATP 3002 1_555 D MG MG . B MG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc3 C O1B ATP . B ATP 3002 1_555 D MG MG . B MG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? 
metalc ? metalc4 C O3G ATP . B ATP 3002 1_555 D MG MG . B MG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     4F93 
_atom_sites.fract_transf_matrix[1][1]    0.006797 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004022 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006469 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00811 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP B 1 3001 3001 ADP ADP . 
C 3 ATP B 1 3002 4001 ATP ATP . 
D 4 MG B 1 3003 1 MG MG . 
E 5 SAN B 1 3004 1 SAN SAN . 
F 6 HOH B 1 3101 1 HOH HOH . 
F 6 HOH B 2 3102 2 HOH HOH . 
F 6 HOH B 3 3103 3 HOH HOH . 
F 6 HOH B 4 3104 4 HOH HOH . 
F 6 HOH B 5 3105 5 HOH HOH . 
F 6 HOH B 6 3106 6 HOH HOH . 
F 6 HOH B 7 3107 7 HOH HOH . 
F 6 HOH B 8 3108 8 HOH HOH . 
F 6 HOH B 9 3109 9 HOH HOH . 
F 6 HOH B 10 3110 10 HOH HOH . 
F 6 HOH B 11 3111 11 HOH HOH . 
F 6 HOH B 12 3112 12 HOH HOH . 
F 6 HOH B 13 3113 13 HOH HOH . 
F 6 HOH B 14 3114 14 HOH HOH . 
F 6 HOH B 15 3115 15 HOH HOH . 
F 6 HOH B 16 3116 16 HOH HOH . 
F 6 HOH B 17 3117 17 HOH HOH . 
F 6 HOH B 18 3118 18 HOH HOH . 
F 6 HOH B 19 3119 19 HOH HOH . 
F 6 HOH B 20 3120 20 HOH HOH . 
F 6 HOH B 21 3121 21 HOH HOH . 
F 6 HOH B 22 3122 22 HOH HOH . 
F 6 HOH B 23 3123 23 HOH HOH . 
F 6 HOH B 24 3124 24 HOH HOH . 
F 6 HOH B 25 3125 25 HOH HOH . 
F 6 HOH B 26 3126 26 HOH HOH . 
F 6 HOH B 27 3127 27 HOH HOH . 
F 6 HOH B 28 3128 28 HOH HOH . 
F 6 HOH B 29 3129 29 HOH HOH . 
F 6 HOH B 30 3130 30 HOH HOH . 
F 6 HOH B 31 3131 31 HOH HOH . 
F 6 HOH B 32 3132 32 HOH HOH . 
F 6 HOH B 33 3133 33 HOH HOH . 
F 6 HOH B 34 3134 34 HOH HOH . 
F 6 HOH B 35 3135 35 HOH HOH . 
F 6 HOH B 36 3136 36 HOH HOH . 
F 6 HOH B 37 3137 37 HOH HOH . 
F 6 HOH B 38 3138 38 HOH HOH . 
F 6 HOH B 39 3139 39 HOH HOH . 
F 6 HOH B 40 3140 40 HOH HOH . 
F 6 HOH B 41 3141 41 HOH HOH . 
F 6 HOH B 42 3142 42 HOH HOH . 
F 6 HOH B 43 3143 43 HOH HOH . 
F 6 HOH B 44 3144 44 HOH HOH . 
F 6 HOH B 45 3145 46 HOH HOH . 
F 6 HOH B 46 3146 47 HOH HOH . 
F 6 HOH B 47 3147 48 HOH HOH . 
F 6 HOH B 48 3148 49 HOH HOH . 
F 6 HOH B 49 3149 50 HOH HOH . 
F 6 HOH B 50 3150 51 HOH HOH . 
F 6 HOH B 51 3151 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 3 -68.191 -19.625 -43.202 1 199.61 ? PG ATP 3002 B 1 
HETATM 2 O O1G ATP . . . C 3 -69.377 -19.742 -44.141 1 136.77 ? O1G ATP 3002 B 1 
HETATM 3 O O2G ATP . . . C 3 -66.975 -19.014 -43.831 1 217.39 ? O2G ATP 3002 B 1 
HETATM 4 O O3G ATP . . . C 3 -68.538 -19.065 -41.833 1 206.02 ? O3G ATP 3002 B 1 
HETATM 5 P PB ATP . . . C 3 -67.878 -22.323 -43.926 1 104.56 ? PB ATP 3002 B 1 
HETATM 6 O O1B ATP . . . C 3 -69.359 -22.461 -44.092 1 128.68 ? O1B ATP 3002 B 1 
HETATM 7 O O2B ATP . . . C 3 -67.068 -23.501 -43.463 1 96.49 ? O2B ATP 3002 B 1 
HETATM 8 O O3B ATP . . . C 3 -67.673 -21.124 -42.885 1 139.11 ? O3B ATP 3002 B 1 
HETATM 9 P PA ATP . . . C 3 -68.008 -21.63 -46.674 1 98.07 ? PA ATP 3002 B 1 
HETATM 10 O O1A ATP . . . C 3 -68.21 -20.173 -46.992 1 94.42 ? O1A ATP 3002 B 1 
HETATM 11 O O2A ATP . . . C 3 -69.233 -22.501 -46.696 1 135.54 ? O2A ATP 3002 B 1 
HETATM 12 O O3A ATP . . . C 3 -67.201 -21.769 -45.282 1 173.77 ? O3A ATP 3002 B 1 
HETATM 13 O O5' ATP . . . C 3 -66.972 -22.308 -47.698 1 95.65 ? O5' ATP 3002 B 1 
HETATM 14 C C5' ATP . . . C 3 -65.708 -21.736 -48.012 1 99.16 ? C5' ATP 3002 B 1 
HETATM 15 C C4' ATP . . . C 3 -65.475 -21.727 -49.524 1 96.09 ? C4' ATP 3002 B 1 
HETATM 16 O O4' ATP . . . C 3 -65.325 -23.049 -50.052 1 87.19 ? O4' ATP 3002 B 1 
HETATM 17 C C3' ATP . . . C 3 -66.661 -21.071 -50.215 1 120.11 ? C3' ATP 3002 B 1 
HETATM 18 O O3' ATP . . . C 3 -66.201 -19.961 -50.992 1 123.59 ? O3' ATP 3002 B 1 
HETATM 19 C C2' ATP . . . C 3 -67.253 -22.14 -51.112 1 121.24 ? C2' ATP 3002 B 1 
HETATM 20 O O2' ATP . . . C 3 -67.551 -21.587 -52.394 1 122.3 ? O2' ATP 3002 B 1 
HETATM 21 C C1' ATP . . . C 3 -66.171 -23.204 -51.199 1 116.42 ? C1' ATP 3002 B 1 
HETATM 22 N N9 ATP . . . C 3 -66.749 -24.57 -51.196 1 123.86 ? N9 ATP 3002 B 1 
HETATM 23 C C8 ATP . . . C 3 -67.892 -24.963 -50.593 1 110.78 ? C8 ATP 3002 B 1 
HETATM 24 N N7 ATP . . . C 3 -68.111 -26.288 -50.787 1 100.62 ? N7 ATP 3002 B 1 
HETATM 25 C C5 ATP . . . C 3 -67.094 -26.754 -51.536 1 116.36 ? C5 ATP 3002 B 1 
HETATM 26 C C6 ATP . . . C 3 -66.701 -28.059 -52.111 1 131.51 ? C6 ATP 3002 B 1 
HETATM 27 N N6 ATP . . . C 3 -67.471 -29.155 -51.909 1 129.53 ? N6 ATP 3002 B 1 
HETATM 28 N N1 ATP . . . C 3 -65.558 -28.118 -52.839 1 131.97 ? N1 ATP 3002 B 1 
HETATM 29 C C2 ATP . . . C 3 -64.787 -27.033 -53.044 1 113.61 ? C2 ATP 3002 B 1 
HETATM 30 N N3 ATP . . . C 3 -65.085 -25.818 -52.552 1 114.02 ? N3 ATP 3002 B 1 
HETATM 31 C C4 ATP . . . C 3 -66.202 -25.62 -51.808 1 120.16 ? C4 ATP 3002 B 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           31 
#