data_4F94 # _model_server_result.job_id UohYzgMA_nXR5vWWqYaGXQ _model_server_result.datetime_utc '2024-11-25 16:19:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f94 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4F94 # _exptl.entry_id 4F94 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-5,5-dimethyl-2-[(1R)-1-{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}-2-oxoethyl]-1,3-thiazolidine-4-carb oxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F94 _cell.length_a 102.334 _cell.length_b 102.334 _cell.length_c 87.444 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F94 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H21 N3 O5 S' _chem_comp.formula_weight 403.452 _chem_comp.id 1S6 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-5,5-dimethyl-2-[(1R)-1-{[(5-methyl-3-phenyl-1,2-oxazol-4-yl)carbonyl]amino}-2-oxoethyl]-1,3-thiazolidine-4-carb oxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Oxacillin, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAV 1S6 sing 1 n n OAQ CAV 1S6 sing 2 n y OAQ NAN 1S6 sing 3 n y CAV CAY 1S6 doub 4 n y NAN CAX 1S6 doub 5 n y OAF CAU 1S6 doub 6 n n CAY CAU 1S6 sing 7 n n CAY CAX 1S6 sing 8 n y CAU N 1S6 sing 9 n n CAX CAW 1S6 sing 10 n n CAM CAW 1S6 doub 11 n y CAM CAK 1S6 sing 12 n y N CA 1S6 sing 13 n n CAW CAL 1S6 sing 14 n y CA C 1S6 sing 15 n n CA CB 1S6 sing 16 n n CAK CAI 1S6 doub 17 n y C OXT 1S6 doub 18 n n CAL CAJ 1S6 doub 19 n y CB SAR 1S6 sing 20 n n CB NAP 1S6 sing 21 n n SAR CBC 1S6 sing 22 n n CAI CAJ 1S6 sing 23 n y NAP CBB 1S6 sing 24 n n CBC CBB 1S6 sing 25 n n CBC CAB 1S6 sing 26 n n CBC CAC 1S6 sing 27 n n CBB CAT 1S6 sing 28 n n CAT OAE 1S6 doub 29 n n CAT OAH 1S6 sing 30 n n C H1 1S6 sing 31 n n N H2 1S6 sing 32 n n CA H3 1S6 sing 33 n n CB H4 1S6 sing 34 n n CAA H5 1S6 sing 35 n n CAA H6 1S6 sing 36 n n CAA H7 1S6 sing 37 n n CAB H8 1S6 sing 38 n n CAB H9 1S6 sing 39 n n CAB H10 1S6 sing 40 n n CAC H11 1S6 sing 41 n n CAC H12 1S6 sing 42 n n CAC H13 1S6 sing 43 n n OAH H14 1S6 sing 44 n n CAI H15 1S6 sing 45 n n CAJ H16 1S6 sing 46 n n CAK H17 1S6 sing 47 n n CAL H18 1S6 sing 48 n n CAM H19 1S6 sing 49 n n NAP H20 1S6 sing 50 n n CBB H22 1S6 sing 51 n n # _atom_sites.entry_id 4F94 _atom_sites.fract_transf_matrix[1][1] 0.009772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1S6 A 1 301 301 1S6 SOY . C 3 SO4 A 1 302 302 SO4 SO4 . D 3 SO4 A 1 303 303 SO4 SO4 . E 3 SO4 A 1 304 304 SO4 SO4 . F 3 SO4 A 1 305 305 SO4 SO4 . G 4 HOH A 1 401 401 HOH HOH . G 4 HOH A 2 402 402 HOH HOH . G 4 HOH A 3 403 403 HOH HOH . G 4 HOH A 4 404 404 HOH HOH . G 4 HOH A 5 405 405 HOH HOH . G 4 HOH A 6 406 406 HOH HOH . G 4 HOH A 7 407 407 HOH HOH . G 4 HOH A 8 408 408 HOH HOH . G 4 HOH A 9 409 409 HOH HOH . G 4 HOH A 10 410 410 HOH HOH . G 4 HOH A 11 411 411 HOH HOH . G 4 HOH A 12 412 412 HOH HOH . G 4 HOH A 13 413 413 HOH HOH . G 4 HOH A 14 414 414 HOH HOH . G 4 HOH A 15 415 415 HOH HOH . G 4 HOH A 16 416 416 HOH HOH . G 4 HOH A 17 417 417 HOH HOH . G 4 HOH A 18 418 418 HOH HOH . G 4 HOH A 19 419 419 HOH HOH . G 4 HOH A 20 420 420 HOH HOH . G 4 HOH A 21 421 421 HOH HOH . G 4 HOH A 22 422 422 HOH HOH . G 4 HOH A 23 423 423 HOH HOH . G 4 HOH A 24 424 424 HOH HOH . G 4 HOH A 25 425 425 HOH HOH . G 4 HOH A 26 426 426 HOH HOH . G 4 HOH A 27 427 427 HOH HOH . G 4 HOH A 28 428 428 HOH HOH . G 4 HOH A 29 429 429 HOH HOH . G 4 HOH A 30 430 430 HOH HOH . G 4 HOH A 31 431 431 HOH HOH . G 4 HOH A 32 432 432 HOH HOH . G 4 HOH A 33 433 433 HOH HOH . G 4 HOH A 34 434 434 HOH HOH . G 4 HOH A 35 435 435 HOH HOH . G 4 HOH A 36 436 436 HOH HOH . G 4 HOH A 37 437 437 HOH HOH . G 4 HOH A 38 438 438 HOH HOH . G 4 HOH A 39 439 439 HOH HOH . G 4 HOH A 40 440 440 HOH HOH . G 4 HOH A 41 441 441 HOH HOH . G 4 HOH A 42 442 442 HOH HOH . G 4 HOH A 43 443 443 HOH HOH . G 4 HOH A 44 444 444 HOH HOH . G 4 HOH A 45 445 445 HOH HOH . G 4 HOH A 46 446 446 HOH HOH . G 4 HOH A 47 447 447 HOH HOH . G 4 HOH A 48 448 448 HOH HOH . G 4 HOH A 49 449 449 HOH HOH . G 4 HOH A 50 450 450 HOH HOH . G 4 HOH A 51 451 451 HOH HOH . G 4 HOH A 52 452 452 HOH HOH . G 4 HOH A 53 453 453 HOH HOH . G 4 HOH A 54 454 454 HOH HOH . G 4 HOH A 55 455 455 HOH HOH . G 4 HOH A 56 456 456 HOH HOH . G 4 HOH A 57 457 457 HOH HOH . G 4 HOH A 58 458 458 HOH HOH . G 4 HOH A 59 459 459 HOH HOH . G 4 HOH A 60 460 460 HOH HOH . G 4 HOH A 61 461 461 HOH HOH . G 4 HOH A 62 462 462 HOH HOH . G 4 HOH A 63 463 463 HOH HOH . G 4 HOH A 64 464 464 HOH HOH . G 4 HOH A 65 465 465 HOH HOH . G 4 HOH A 66 466 466 HOH HOH . G 4 HOH A 67 467 467 HOH HOH . G 4 HOH A 68 468 468 HOH HOH . G 4 HOH A 69 469 469 HOH HOH . G 4 HOH A 70 470 470 HOH HOH . G 4 HOH A 71 471 471 HOH HOH . G 4 HOH A 72 472 472 HOH HOH . G 4 HOH A 73 473 473 HOH HOH . G 4 HOH A 74 474 474 HOH HOH . G 4 HOH A 75 475 475 HOH HOH . G 4 HOH A 76 476 476 HOH HOH . G 4 HOH A 77 477 477 HOH HOH . G 4 HOH A 78 478 478 HOH HOH . G 4 HOH A 79 479 479 HOH HOH . G 4 HOH A 80 480 480 HOH HOH . G 4 HOH A 81 481 481 HOH HOH . G 4 HOH A 82 482 482 HOH HOH . G 4 HOH A 83 483 483 HOH HOH . G 4 HOH A 84 484 484 HOH HOH . G 4 HOH A 85 485 485 HOH HOH . G 4 HOH A 86 486 486 HOH HOH . G 4 HOH A 87 487 487 HOH HOH . G 4 HOH A 88 488 488 HOH HOH . G 4 HOH A 89 489 489 HOH HOH . G 4 HOH A 90 490 490 HOH HOH . G 4 HOH A 91 491 491 HOH HOH . G 4 HOH A 92 492 492 HOH HOH . G 4 HOH A 93 493 493 HOH HOH . G 4 HOH A 94 494 494 HOH HOH . G 4 HOH A 95 495 495 HOH HOH . G 4 HOH A 96 496 496 HOH HOH . G 4 HOH A 97 497 497 HOH HOH . G 4 HOH A 98 498 498 HOH HOH . G 4 HOH A 99 499 499 HOH HOH . G 4 HOH A 100 500 500 HOH HOH . G 4 HOH A 101 501 501 HOH HOH . G 4 HOH A 102 502 502 HOH HOH . G 4 HOH A 103 503 503 HOH HOH . G 4 HOH A 104 504 504 HOH HOH . G 4 HOH A 105 505 505 HOH HOH . G 4 HOH A 106 506 506 HOH HOH . G 4 HOH A 107 507 507 HOH HOH . G 4 HOH A 108 508 508 HOH HOH . G 4 HOH A 109 509 509 HOH HOH . G 4 HOH A 110 510 510 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 1S6 . . . B 2 29.429 -0.129 7.911 1 31.57 ? C 1S6 301 A 1 HETATM 2 N N 1S6 . . . B 2 31.179 -1.257 6.681 1 35.91 ? N 1S6 301 A 1 HETATM 3 C CA 1S6 . . . B 2 30.366 -1.284 7.868 1 35.3 ? CA 1S6 301 A 1 HETATM 4 C CB 1S6 . . . B 2 31.137 -1.392 9.192 1 36.59 ? CB 1S6 301 A 1 HETATM 5 C CAA 1S6 . . . B 2 34.391 -0.585 5.631 1 43.1 ? CAA 1S6 301 A 1 HETATM 6 C CAB 1S6 . . . B 2 33.513 -1.283 11.635 1 36.58 ? CAB 1S6 301 A 1 HETATM 7 C CAC 1S6 . . . B 2 35.029 -0.812 9.556 1 32.36 ? CAC 1S6 301 A 1 HETATM 8 O OAE 1S6 . . . B 2 31.939 1.582 11.425 1 47.59 ? OAE 1S6 301 A 1 HETATM 9 O OAF 1S6 . . . B 2 31.359 -3.501 6.647 1 39.09 ? OAF 1S6 301 A 1 HETATM 10 O OAH 1S6 . . . B 2 34.147 1.493 11.362 1 39.91 ? OAH 1S6 301 A 1 HETATM 11 C CAI 1S6 . . . B 2 29.589 -6.309 2.414 1 51.93 ? CAI 1S6 301 A 1 HETATM 12 C CAJ 1S6 . . . B 2 29.911 -5.249 1.541 1 49.63 ? CAJ 1S6 301 A 1 HETATM 13 C CAK 1S6 . . . B 2 30.12 -6.313 3.719 1 49.5 ? CAK 1S6 301 A 1 HETATM 14 C CAL 1S6 . . . B 2 30.733 -4.191 1.953 1 43.16 ? CAL 1S6 301 A 1 HETATM 15 C CAM 1S6 . . . B 2 30.944 -5.248 4.12 1 45.93 ? CAM 1S6 301 A 1 HETATM 16 N NAN 1S6 . . . B 2 33.23 -2.706 2.938 1 51.05 ? NAN 1S6 301 A 1 HETATM 17 N NAP 1S6 . . . B 2 31.532 -0.142 9.735 1 32.52 ? NAP 1S6 301 A 1 HETATM 18 O OAQ 1S6 . . . B 2 34.018 -1.813 3.578 1 44.47 ? OAQ 1S6 301 A 1 HETATM 19 S SAR 1S6 . . . B 2 32.692 -2.192 9.007 1 31.17 ? SAR 1S6 301 A 1 HETATM 20 C CAT 1S6 . . . B 2 33.024 1.078 11.007 1 41.49 ? CAT 1S6 301 A 1 HETATM 21 C CAU 1S6 . . . B 2 31.57 -2.417 6.168 1 39.9 ? CAU 1S6 301 A 1 HETATM 22 C CAV 1S6 . . . B 2 33.597 -1.556 4.825 1 43.48 ? CAV 1S6 301 A 1 HETATM 23 C CAW 1S6 . . . B 2 31.199 -4.155 3.254 1 43.89 ? CAW 1S6 301 A 1 HETATM 24 C CAX 1S6 . . . B 2 32.162 -3.098 3.693 1 48.14 ? CAX 1S6 301 A 1 HETATM 25 C CAY 1S6 . . . B 2 32.381 -2.375 4.971 1 44.34 ? CAY 1S6 301 A 1 HETATM 26 C CBB 1S6 . . . B 2 32.961 0 9.93 1 34.79 ? CBB 1S6 301 A 1 HETATM 27 C CBC 1S6 . . . B 2 33.749 -1.373 10.142 1 33.76 ? CBC 1S6 301 A 1 HETATM 28 O OXT 1S6 . . . B 2 29.785 1.21 7.505 1 29.86 ? OXT 1S6 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #