data_4F99
#
_model_server_result.job_id            8ti41Ieaox6FVqmTe8zR4g 
_model_server_result.datetime_utc      '2024-11-29 18:57:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4f99 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    4F99 
#
_exptl.entry_id    4F99 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4F99 
_cell.length_a            61.48 
_cell.length_b            61.48 
_cell.length_c            237.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4F99 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 147 A ASN 182 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc2 A OD2 ASP 161 A ASP 196 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc3 C O2A ADP . A ADP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc4 C O1B ADP . A ADP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc5 D MG MG . A MG 602 1_555 F O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc6 D MG MG . A MG 602 1_555 F O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc7 B SG CYS 90 B CYS 296 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc8 B SG CYS 93 B CYS 299 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc9 B NE2 HIS 103 B HIS 309 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc10 B ND1 HIS 109 B HIS 315 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4F99 
_atom_sites.fract_transf_matrix[1][1]    0.016265 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016265 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004212 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ADP A 1 601 1 ADP ADP . 
D 4 MG A 1 602 2 MG MG . 
E 5 ZN B 1 401 3 ZN ZN . 
F 6 HOH A 1 701 1 HOH HOH . 
F 6 HOH A 2 702 2 HOH HOH . 
F 6 HOH A 3 703 3 HOH HOH . 
F 6 HOH A 4 704 8 HOH HOH . 
F 6 HOH A 5 705 9 HOH HOH . 
F 6 HOH A 6 706 10 HOH HOH . 
F 6 HOH A 7 707 19 HOH HOH . 
F 6 HOH A 8 708 21 HOH HOH . 
F 6 HOH A 9 709 22 HOH HOH . 
F 6 HOH A 10 710 24 HOH HOH . 
F 6 HOH A 11 711 26 HOH HOH . 
F 6 HOH A 12 712 29 HOH HOH . 
F 6 HOH A 13 713 35 HOH HOH . 
F 6 HOH A 14 714 37 HOH HOH . 
F 6 HOH A 15 715 43 HOH HOH . 
F 6 HOH A 16 716 46 HOH HOH . 
F 6 HOH A 17 717 58 HOH HOH . 
F 6 HOH A 18 718 76 HOH HOH . 
F 6 HOH A 19 719 78 HOH HOH . 
F 6 HOH A 20 720 79 HOH HOH . 
F 6 HOH A 21 721 82 HOH HOH . 
F 6 HOH A 22 722 85 HOH HOH . 
F 6 HOH A 23 723 86 HOH HOH . 
F 6 HOH A 24 724 94 HOH HOH . 
F 6 HOH A 25 725 95 HOH HOH . 
F 6 HOH A 26 726 99 HOH HOH . 
F 6 HOH A 27 727 101 HOH HOH . 
F 6 HOH A 28 728 105 HOH HOH . 
F 6 HOH A 29 729 108 HOH HOH . 
F 6 HOH A 30 730 114 HOH HOH . 
F 6 HOH A 31 731 117 HOH HOH . 
F 6 HOH A 32 732 119 HOH HOH . 
F 6 HOH A 33 733 122 HOH HOH . 
F 6 HOH A 34 734 123 HOH HOH . 
F 6 HOH A 35 735 124 HOH HOH . 
F 6 HOH A 36 736 125 HOH HOH . 
F 6 HOH A 37 737 126 HOH HOH . 
F 6 HOH A 38 738 127 HOH HOH . 
F 6 HOH A 39 739 128 HOH HOH . 
F 6 HOH A 40 740 129 HOH HOH . 
G 6 HOH B 1 501 15 HOH HOH . 
G 6 HOH B 2 502 20 HOH HOH . 
G 6 HOH B 3 503 36 HOH HOH . 
G 6 HOH B 4 504 38 HOH HOH . 
G 6 HOH B 5 505 50 HOH HOH . 
G 6 HOH B 6 506 53 HOH HOH . 
G 6 HOH B 7 507 63 HOH HOH . 
G 6 HOH B 8 508 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 13.641 21.175 58.897 1 37.15 ? PB ADP 601 A 1 
HETATM 2 O O1B ADP . . . C 3 13.872 21.38 57.421 1 37.98 ? O1B ADP 601 A 1 
HETATM 3 O O2B ADP . . . C 3 13.949 22.45 59.666 1 43.74 ? O2B ADP 601 A 1 
HETATM 4 O O3B ADP . . . C 3 12.353 20.506 59.327 1 37.13 ? O3B ADP 601 A 1 
HETATM 5 P PA ADP . . . C 3 16.143 19.731 58.757 1 34.7 ? PA ADP 601 A 1 
HETATM 6 O O1A ADP . . . C 3 16.461 18.324 59.229 1 40.14 ? O1A ADP 601 A 1 
HETATM 7 O O2A ADP . . . C 3 16.149 19.981 57.268 1 37.03 ? O2A ADP 601 A 1 
HETATM 8 O O3A ADP . . . C 3 14.715 20.084 59.396 1 36.83 ? O3A ADP 601 A 1 
HETATM 9 O O5' ADP . . . C 3 17.14 20.763 59.467 1 36.78 ? O5' ADP 601 A 1 
HETATM 10 C C5' ADP . . . C 3 17.047 22.173 59.214 1 37.21 ? C5' ADP 601 A 1 
HETATM 11 C C4' ADP . . . C 3 18.42 22.749 58.931 1 36.59 ? C4' ADP 601 A 1 
HETATM 12 O O4' ADP . . . C 3 19.322 22.537 60.031 1 35.45 ? O4' ADP 601 A 1 
HETATM 13 C C3' ADP . . . C 3 19.066 22.057 57.758 1 38.19 ? C3' ADP 601 A 1 
HETATM 14 O O3' ADP . . . C 3 18.636 22.601 56.51 1 42.08 ? O3' ADP 601 A 1 
HETATM 15 C C2' ADP . . . C 3 20.551 22.242 58.049 1 37.88 ? C2' ADP 601 A 1 
HETATM 16 O O2' ADP . . . C 3 21.014 23.514 57.62 1 40.16 ? O2' ADP 601 A 1 
HETATM 17 C C1' ADP . . . C 3 20.627 22.205 59.562 1 34.7 ? C1' ADP 601 A 1 
HETATM 18 N N9 ADP . . . C 3 20.99 20.811 59.907 1 35.16 ? N9 ADP 601 A 1 
HETATM 19 C C8 ADP . . . C 3 20.133 19.767 60.085 1 34.14 ? C8 ADP 601 A 1 
HETATM 20 N N7 ADP . . . C 3 20.823 18.624 60.364 1 32.68 ? N7 ADP 601 A 1 
HETATM 21 C C5 ADP . . . C 3 22.133 18.913 60.349 1 31.87 ? C5 ADP 601 A 1 
HETATM 22 C C6 ADP . . . C 3 23.403 18.173 60.573 1 32.06 ? C6 ADP 601 A 1 
HETATM 23 N N6 ADP . . . C 3 23.4 16.852 60.869 1 33.17 ? N6 ADP 601 A 1 
HETATM 24 N N1 ADP . . . C 3 24.567 18.871 60.47 1 32.97 ? N1 ADP 601 A 1 
HETATM 25 C C2 ADP . . . C 3 24.57 20.191 60.178 1 32.69 ? C2 ADP 601 A 1 
HETATM 26 N N3 ADP . . . C 3 23.455 20.918 59.984 1 30.8 ? N3 ADP 601 A 1 
HETATM 27 C C4 ADP . . . C 3 22.238 20.358 60.053 1 31.85 ? C4 ADP 601 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           27 
#