data_4F9B # _model_server_result.job_id mU9hHT0OIbWj7iWDD4wd0A _model_server_result.datetime_utc '2024-11-26 07:44:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4f9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 4F9B # _exptl.entry_id 4F9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 213.235 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(pyridin-4-yl)-1,5,6,7-tetrahydro-4H-pyrrolo[3,2-c]pyridin-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4F9B _cell.length_a 60.92 _cell.length_b 67.88 _cell.length_c 238.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4F9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 90 B CYS 296 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc2 B SG CYS 93 B CYS 299 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 B NE2 HIS 103 B HIS 309 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 B ND1 HIS 109 B HIS 315 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc5 D SG CYS 90 D CYS 296 1_555 H ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc6 D SG CYS 93 D CYS 299 1_555 H ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 D NE2 HIS 103 D HIS 309 1_555 H ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc8 D ND1 HIS 109 D HIS 315 1_555 H ZN ZN . D ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? # _chem_comp.formula 'C12 H11 N3 O' _chem_comp.formula_weight 213.235 _chem_comp.id 0SY _chem_comp.mon_nstd_flag . _chem_comp.name 2-(pyridin-4-yl)-1,5,6,7-tetrahydro-4H-pyrrolo[3,2-c]pyridin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB NAI 0SY doub 1 n y CAB CAD 0SY sing 2 n y NAI CAC 0SY sing 3 n y CAD CAM 0SY doub 4 n y CAC CAE 0SY doub 5 n y CAM CAE 0SY sing 6 n y CAM CAN 0SY sing 7 n n CAF CAN 0SY doub 8 n y CAF CAO 0SY sing 9 n y CAN NAK 0SY sing 10 n y OAA CAL 0SY doub 11 n n CAO CAL 0SY sing 12 n n CAO CAP 0SY doub 13 n y CAL NAJ 0SY sing 14 n n NAK CAP 0SY sing 15 n y CAP CAH 0SY sing 16 n n NAJ CAG 0SY sing 17 n n CAH CAG 0SY sing 18 n n CAF H1 0SY sing 19 n n NAJ H2 0SY sing 20 n n CAG H3 0SY sing 21 n n CAH H4 0SY sing 22 n n NAK H5 0SY sing 23 n n CAD H6 0SY sing 24 n n CAB H7 0SY sing 25 n n CAC H8 0SY sing 26 n n CAE H9 0SY sing 27 n n CAG H10 0SY sing 28 n n CAH H11 0SY sing 29 n n # _atom_sites.entry_id 4F9B _atom_sites.fract_transf_matrix[1][1] 0.016415 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 0SY A 1 601 1 0SY DRG . F 4 ZN B 1 401 3 ZN ZN . G 3 0SY C 1 601 1 0SY DRG . H 4 ZN D 1 401 3 ZN ZN . I 5 HOH A 1 701 3 HOH HOH . I 5 HOH A 2 702 12 HOH HOH . I 5 HOH A 3 703 14 HOH HOH . I 5 HOH A 4 704 15 HOH HOH . I 5 HOH A 5 705 21 HOH HOH . I 5 HOH A 6 706 22 HOH HOH . I 5 HOH A 7 707 24 HOH HOH . I 5 HOH A 8 708 25 HOH HOH . I 5 HOH A 9 709 26 HOH HOH . I 5 HOH A 10 710 28 HOH HOH . I 5 HOH A 11 711 30 HOH HOH . I 5 HOH A 12 712 32 HOH HOH . I 5 HOH A 13 713 34 HOH HOH . I 5 HOH A 14 714 69 HOH HOH . I 5 HOH A 15 715 70 HOH HOH . I 5 HOH A 16 716 72 HOH HOH . I 5 HOH A 17 717 75 HOH HOH . I 5 HOH A 18 718 76 HOH HOH . I 5 HOH A 19 719 77 HOH HOH . I 5 HOH A 20 720 79 HOH HOH . I 5 HOH A 21 721 80 HOH HOH . I 5 HOH A 22 722 82 HOH HOH . I 5 HOH A 23 723 83 HOH HOH . I 5 HOH A 24 724 90 HOH HOH . I 5 HOH A 25 725 105 HOH HOH . I 5 HOH A 26 726 106 HOH HOH . I 5 HOH A 27 727 108 HOH HOH . I 5 HOH A 28 728 109 HOH HOH . I 5 HOH A 29 729 110 HOH HOH . I 5 HOH A 30 730 112 HOH HOH . I 5 HOH A 31 731 113 HOH HOH . I 5 HOH A 32 732 2 HOH HOH . I 5 HOH A 33 733 3 HOH HOH . I 5 HOH A 34 734 5 HOH HOH . I 5 HOH A 35 735 6 HOH HOH . I 5 HOH A 36 736 10 HOH HOH . I 5 HOH A 37 737 11 HOH HOH . I 5 HOH A 38 738 14 HOH HOH . I 5 HOH A 39 739 18 HOH HOH . I 5 HOH A 40 740 20 HOH HOH . I 5 HOH A 41 741 21 HOH HOH . I 5 HOH A 42 742 22 HOH HOH . I 5 HOH A 43 743 23 HOH HOH . I 5 HOH A 44 744 24 HOH HOH . I 5 HOH A 45 745 25 HOH HOH . I 5 HOH A 46 746 26 HOH HOH . I 5 HOH A 47 747 11 HOH HOH . I 5 HOH A 48 748 13 HOH HOH . I 5 HOH A 49 749 18 HOH HOH . I 5 HOH A 50 750 21 HOH HOH . I 5 HOH A 51 751 23 HOH HOH . I 5 HOH A 52 752 34 HOH HOH . I 5 HOH A 53 753 38 HOH HOH . J 5 HOH B 1 501 8 HOH HOH . J 5 HOH B 2 502 31 HOH HOH . J 5 HOH B 3 503 81 HOH HOH . J 5 HOH B 4 504 85 HOH HOH . J 5 HOH B 5 505 86 HOH HOH . J 5 HOH B 6 506 87 HOH HOH . J 5 HOH B 7 507 88 HOH HOH . J 5 HOH B 8 508 89 HOH HOH . J 5 HOH B 9 509 13 HOH HOH . J 5 HOH B 10 510 29 HOH HOH . J 5 HOH B 11 511 2 HOH HOH . J 5 HOH B 12 512 1 HOH HOH . K 5 HOH C 1 701 7 HOH HOH . K 5 HOH C 2 702 19 HOH HOH . K 5 HOH C 3 703 20 HOH HOH . K 5 HOH C 4 704 35 HOH HOH . K 5 HOH C 5 705 36 HOH HOH . K 5 HOH C 6 706 54 HOH HOH . K 5 HOH C 7 707 55 HOH HOH . K 5 HOH C 8 708 56 HOH HOH . K 5 HOH C 9 709 59 HOH HOH . K 5 HOH C 10 710 61 HOH HOH . K 5 HOH C 11 711 62 HOH HOH . K 5 HOH C 12 712 63 HOH HOH . K 5 HOH C 13 713 64 HOH HOH . K 5 HOH C 14 714 66 HOH HOH . K 5 HOH C 15 715 95 HOH HOH . K 5 HOH C 16 716 103 HOH HOH . K 5 HOH C 17 717 107 HOH HOH . K 5 HOH C 18 718 111 HOH HOH . K 5 HOH C 19 719 115 HOH HOH . K 5 HOH C 20 720 117 HOH HOH . K 5 HOH C 21 721 118 HOH HOH . K 5 HOH C 22 722 9 HOH HOH . K 5 HOH C 23 723 12 HOH HOH . K 5 HOH C 24 724 16 HOH HOH . K 5 HOH C 25 725 19 HOH HOH . K 5 HOH C 26 726 27 HOH HOH . K 5 HOH C 27 727 6 HOH HOH . K 5 HOH C 28 728 9 HOH HOH . K 5 HOH C 29 729 6 HOH HOH . K 5 HOH C 30 730 9 HOH HOH . K 5 HOH C 31 731 15 HOH HOH . K 5 HOH C 32 732 28 HOH HOH . K 5 HOH C 33 733 45 HOH HOH . L 5 HOH D 1 501 67 HOH HOH . L 5 HOH D 2 502 114 HOH HOH . L 5 HOH D 3 503 116 HOH HOH . L 5 HOH D 4 504 3 HOH HOH . L 5 HOH D 5 505 17 HOH HOH . L 5 HOH D 6 506 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAF 0SY . . . G 3 29.739 -14.677 29.545 1 39.43 ? CAF 0SY 601 C 1 HETATM 2 C CAO 0SY . . . G 3 30.801 -13.94 29.952 1 43.33 ? CAO 0SY 601 C 1 HETATM 3 C CAL 0SY . . . G 3 32.125 -14.192 30.062 1 42.07 ? CAL 0SY 601 C 1 HETATM 4 O OAA 0SY . . . G 3 32.597 -15.301 29.824 1 40.85 ? OAA 0SY 601 C 1 HETATM 5 N NAJ 0SY . . . G 3 33.021 -13.215 30.507 1 38.93 ? NAJ 0SY 601 C 1 HETATM 6 C CAG 0SY . . . G 3 32.598 -11.86 30.88 1 37.5 ? CAG 0SY 601 C 1 HETATM 7 C CAH 0SY . . . G 3 31.108 -11.628 30.745 1 40.03 ? CAH 0SY 601 C 1 HETATM 8 C CAP 0SY . . . G 3 30.312 -12.715 30.279 1 45.64 ? CAP 0SY 601 C 1 HETATM 9 N NAK 0SY . . . G 3 28.989 -12.657 30.075 1 42.79 ? NAK 0SY 601 C 1 HETATM 10 C CAN 0SY . . . G 3 28.648 -13.858 29.575 1 42.64 ? CAN 0SY 601 C 1 HETATM 11 C CAM 0SY . . . G 3 27.366 -14.192 29.288 1 39.57 ? CAM 0SY 601 C 1 HETATM 12 C CAD 0SY . . . G 3 26.979 -15.506 28.974 1 39.42 ? CAD 0SY 601 C 1 HETATM 13 C CAB 0SY . . . G 3 25.644 -15.816 28.71 1 36.27 ? CAB 0SY 601 C 1 HETATM 14 N NAI 0SY . . . G 3 24.663 -14.809 28.767 1 38.02 ? NAI 0SY 601 C 1 HETATM 15 C CAC 0SY . . . G 3 25.04 -13.471 29.082 1 38.48 ? CAC 0SY 601 C 1 HETATM 16 C CAE 0SY . . . G 3 26.384 -13.192 29.337 1 38.38 ? CAE 0SY 601 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #