data_4F9N
#
_model_server_result.job_id            ksYMMaV12Ou9Bk23l98cDw 
_model_server_result.datetime_utc      '2024-11-25 13:39:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4f9n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":303}' 
#
_entry.id    4F9N 
#
_exptl.entry_id    4F9N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              165.153 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-7-methyl-1,7-dihydro-6H-purin-6-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4F9N 
_cell.length_a            131.428 
_cell.length_b            131.428 
_cell.length_c            39.808 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4F9N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 301 NAG 
2 n B NAG 2 B 2 NAG A 302 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 227 A ASN 227 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? 
#
_chem_comp.formula           'C6 H7 N5 O' 
_chem_comp.formula_weight    165.153 
_chem_comp.id                MY6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-amino-7-methyl-1,7-dihydro-6H-purin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N4 C1 MY6 sing 224 n n 
C1 H1 MY6 sing 225 n n 
C1 H1A MY6 sing 226 n n 
C1 H1B MY6 sing 227 n n 
C3 N2 MY6 doub 228 n y 
N2 C12 MY6 sing 229 n y 
C3 N4 MY6 sing 230 n y 
C3 H3 MY6 sing 231 n n 
N4 C5 MY6 sing 232 n y 
C12 C5 MY6 doub 233 n y 
C5 C6 MY6 sing 234 n n 
C6 N8 MY6 sing 235 n n 
C6 O7 MY6 doub 236 n n 
C9 N8 MY6 sing 237 n n 
N8 HN8 MY6 sing 238 n n 
N11 C9 MY6 doub 239 n n 
C9 N10 MY6 sing 240 n n 
N10 HN10 MY6 sing 241 n n 
N10 HN1A MY6 sing 242 n n 
C12 N11 MY6 sing 243 n n 
#
_atom_sites.entry_id                     4F9N 
_atom_sites.fract_transf_matrix[1][1]    0.007609 
_atom_sites.fract_transf_matrix[1][2]    0.004393 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008786 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025121 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MY6 A 1 303 247 MY6 MY6 . 
D 4 HOH A 1 401 1 HOH HOH . 
D 4 HOH A 2 402 2 HOH HOH . 
D 4 HOH A 3 403 3 HOH HOH . 
D 4 HOH A 4 404 4 HOH HOH . 
D 4 HOH A 5 405 5 HOH HOH . 
D 4 HOH A 6 406 6 HOH HOH . 
D 4 HOH A 7 407 7 HOH HOH . 
D 4 HOH A 8 408 8 HOH HOH . 
D 4 HOH A 9 409 9 HOH HOH . 
D 4 HOH A 10 410 10 HOH HOH . 
D 4 HOH A 11 411 11 HOH HOH . 
D 4 HOH A 12 412 12 HOH HOH . 
D 4 HOH A 13 413 13 HOH HOH . 
D 4 HOH A 14 414 14 HOH HOH . 
D 4 HOH A 15 415 15 HOH HOH . 
D 4 HOH A 16 416 16 HOH HOH . 
D 4 HOH A 17 417 17 HOH HOH . 
D 4 HOH A 18 418 18 HOH HOH . 
D 4 HOH A 19 419 19 HOH HOH . 
D 4 HOH A 20 420 20 HOH HOH . 
D 4 HOH A 21 421 21 HOH HOH . 
D 4 HOH A 22 422 22 HOH HOH . 
D 4 HOH A 23 423 23 HOH HOH . 
D 4 HOH A 24 424 24 HOH HOH . 
D 4 HOH A 25 425 25 HOH HOH . 
D 4 HOH A 26 426 26 HOH HOH . 
D 4 HOH A 27 427 27 HOH HOH . 
D 4 HOH A 28 428 28 HOH HOH . 
D 4 HOH A 29 429 29 HOH HOH . 
D 4 HOH A 30 430 30 HOH HOH . 
D 4 HOH A 31 431 31 HOH HOH . 
D 4 HOH A 32 432 32 HOH HOH . 
D 4 HOH A 33 433 33 HOH HOH . 
D 4 HOH A 34 434 34 HOH HOH . 
D 4 HOH A 35 435 35 HOH HOH . 
D 4 HOH A 36 436 36 HOH HOH . 
D 4 HOH A 37 437 37 HOH HOH . 
D 4 HOH A 38 438 38 HOH HOH . 
D 4 HOH A 39 439 39 HOH HOH . 
D 4 HOH A 40 440 40 HOH HOH . 
D 4 HOH A 41 441 41 HOH HOH . 
D 4 HOH A 42 442 43 HOH HOH . 
D 4 HOH A 43 443 44 HOH HOH . 
D 4 HOH A 44 444 45 HOH HOH . 
D 4 HOH A 45 445 46 HOH HOH . 
D 4 HOH A 46 446 47 HOH HOH . 
D 4 HOH A 47 447 48 HOH HOH . 
D 4 HOH A 48 448 49 HOH HOH . 
D 4 HOH A 49 449 50 HOH HOH . 
D 4 HOH A 50 450 51 HOH HOH . 
D 4 HOH A 51 451 52 HOH HOH . 
D 4 HOH A 52 452 53 HOH HOH . 
D 4 HOH A 53 453 54 HOH HOH . 
D 4 HOH A 54 454 55 HOH HOH . 
D 4 HOH A 55 455 56 HOH HOH . 
D 4 HOH A 56 456 57 HOH HOH . 
D 4 HOH A 57 457 58 HOH HOH . 
D 4 HOH A 58 458 59 HOH HOH . 
D 4 HOH A 59 459 60 HOH HOH . 
D 4 HOH A 60 460 61 HOH HOH . 
D 4 HOH A 61 461 62 HOH HOH . 
D 4 HOH A 62 462 63 HOH HOH . 
D 4 HOH A 63 463 64 HOH HOH . 
D 4 HOH A 64 464 65 HOH HOH . 
D 4 HOH A 65 465 66 HOH HOH . 
D 4 HOH A 66 466 67 HOH HOH . 
D 4 HOH A 67 467 68 HOH HOH . 
D 4 HOH A 68 468 69 HOH HOH . 
D 4 HOH A 69 469 70 HOH HOH . 
D 4 HOH A 70 470 71 HOH HOH . 
D 4 HOH A 71 471 72 HOH HOH . 
D 4 HOH A 72 472 73 HOH HOH . 
D 4 HOH A 73 473 74 HOH HOH . 
D 4 HOH A 74 474 75 HOH HOH . 
D 4 HOH A 75 475 76 HOH HOH . 
D 4 HOH A 76 476 77 HOH HOH . 
D 4 HOH A 77 477 78 HOH HOH . 
D 4 HOH A 78 478 79 HOH HOH . 
D 4 HOH A 79 479 80 HOH HOH . 
D 4 HOH A 80 480 81 HOH HOH . 
D 4 HOH A 81 481 82 HOH HOH . 
D 4 HOH A 82 482 83 HOH HOH . 
D 4 HOH A 83 483 84 HOH HOH . 
D 4 HOH A 84 484 85 HOH HOH . 
D 4 HOH A 85 485 86 HOH HOH . 
D 4 HOH A 86 486 87 HOH HOH . 
D 4 HOH A 87 487 88 HOH HOH . 
D 4 HOH A 88 488 89 HOH HOH . 
D 4 HOH A 89 489 90 HOH HOH . 
D 4 HOH A 90 490 91 HOH HOH . 
D 4 HOH A 91 491 92 HOH HOH . 
D 4 HOH A 92 492 93 HOH HOH . 
D 4 HOH A 93 493 94 HOH HOH . 
D 4 HOH A 94 494 95 HOH HOH . 
D 4 HOH A 95 495 96 HOH HOH . 
D 4 HOH A 96 496 97 HOH HOH . 
D 4 HOH A 97 497 98 HOH HOH . 
D 4 HOH A 98 498 99 HOH HOH . 
D 4 HOH A 99 499 100 HOH HOH . 
D 4 HOH A 100 500 101 HOH HOH . 
D 4 HOH A 101 501 102 HOH HOH . 
D 4 HOH A 102 502 103 HOH HOH . 
D 4 HOH A 103 503 104 HOH HOH . 
D 4 HOH A 104 504 105 HOH HOH . 
D 4 HOH A 105 505 106 HOH HOH . 
D 4 HOH A 106 506 107 HOH HOH . 
D 4 HOH A 107 507 108 HOH HOH . 
D 4 HOH A 108 508 109 HOH HOH . 
D 4 HOH A 109 509 110 HOH HOH . 
D 4 HOH A 110 510 111 HOH HOH . 
D 4 HOH A 111 511 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MY6 . . . C 3 21.57 8.005 9.2 0.7 33.44 ? C1 MY6 303 A 1 
HETATM 2 N N2 MY6 . . . C 3 23.011 4.865 7.813 0.7 34.89 ? N2 MY6 303 A 1 
HETATM 3 C C3 MY6 . . . C 3 22.569 6.183 7.753 0.7 34.96 ? C3 MY6 303 A 1 
HETATM 4 N N4 MY6 . . . C 3 22.118 6.613 8.978 0.7 34.72 ? N4 MY6 303 A 1 
HETATM 5 C C5 MY6 . . . C 3 22.246 5.522 9.855 0.7 33.93 ? C5 MY6 303 A 1 
HETATM 6 C C6 MY6 . . . C 3 21.979 5.31 11.291 0.7 32.08 ? C6 MY6 303 A 1 
HETATM 7 O O7 MY6 . . . C 3 21.423 6.255 12.142 0.7 39.68 ? O7 MY6 303 A 1 
HETATM 8 N N8 MY6 . . . C 3 22.274 4.035 11.835 0.7 31.6 ? N8 MY6 303 A 1 
HETATM 9 C C9 MY6 . . . C 3 22.842 2.975 11.062 0.7 32.29 ? C9 MY6 303 A 1 
HETATM 10 N N10 MY6 . . . C 3 23.133 1.746 11.624 0.7 38.88 ? N10 MY6 303 A 1 
HETATM 11 N N11 MY6 . . . C 3 23.116 3.184 9.68 0.7 32.83 ? N11 MY6 303 A 1 
HETATM 12 C C12 MY6 . . . C 3 22.827 4.447 9.111 0.7 33.98 ? C12 MY6 303 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#